>gb|BT017896.1| Zea mays clone EL01N0515E02.c mRNA sequence
          Length = 1171

 Score =  176 bits (89), Expect = 6e-41
 Identities = 272/333 (81%)
 Strand = Plus / Minus

                                                                       
Query: 304 gacctagtggccttgagagacggtatgagtgcataaacctcttcaatggtctcaggccca 363
           |||||| | ||||||||||| || |  ||||||||||||||||||| |||||||||||||
Sbjct: 740 gacctattagccttgagagatggcactagtgcataaacctcttcaacggtctcaggccca 681

                                                                       
Query: 364 atgtttgctatcatgcatatctcgccatcattaacaccatagtctttaaggggtcccagg 423
           ||||||||||||||||||||||| |||||| | || ||| | | |||||| ||| | | |
Sbjct: 680 atgtttgctatcatgcatatctctccatcactgaccccacattttttaagaggttcaatg 621

                                                                       
Query: 424 atttctttcaccaacttcgcagaggtgaagtgattcccttcttttgcatatagaaaggcc 483
             || ||||||  |  | |||| |||||| ||||| || ||||||| |||  |||| || 
Sbjct: 620 gcttgtttcacagagcttgcagtggtgaaatgatttccatcttttgaatactgaaaagct 561

                                                                       
Query: 484 ttgtcgaacgactcgggaatttttatctttggatcctctgataagatagccatatgttcg 543
           ||||| || ||||| |||||||| ||||| || ||||||||||  || ||||| || |||
Sbjct: 560 ttgtcaaaagactcaggaattttgatcttggggtcctctgatagtatggccatgtgctcg 501

                                                                       
Query: 544 tgaattttctgcaacatttctgctacttcacagttcgttaacagtttagaatttggagac 603
           |||||||  ||||| | ||| ||| ||||||| ||| ||| || | ||||||||||||  
Sbjct: 500 tgaatttcttgcaatagttcagctgcttcacaattcattagcattctagaatttggaggg 441

                                            
Query: 604 atatcaagctgaagctttagttctgcatcagac 636
           ||||||||||  |||||||||||||||||||||
Sbjct: 440 atatcaagctctagctttagttctgcatcagac 408

>ref|XM_467541.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 717

 Score =  133 bits (67), Expect = 8e-28
 Identities = 154/183 (84%)
 Strand = Plus / Minus

                                                                       
Query: 454 tgattcccttcttttgcatatagaaaggccttgtcgaacgactcgggaatttttatcttt 513
           ||||| ||||||||  ||||| | || ||||| || || ||||| |||||||| ||||||
Sbjct: 482 tgatttccttctttcacatattggaaagccttatcaaatgactctggaattttgatcttt 423

                                                                       
Query: 514 ggatcctctgataagatagccatatgttcgtgaattttctgcaacatttctgctacttca 573
           |||||||||||||||||||||||||| || |||||||  ||||| | |||||||||||||
Sbjct: 422 ggatcctctgataagatagccatatgctcatgaatttcttgcaatagttctgctacttca 363

                                                                       
Query: 574 cagttcgttaacagtttagaatttggagacatatcaagctgaagctttagttctgcatca 633
           || ||| |||| |    ||| ||||||| |||||| |||| ||||||||| |||||||||
Sbjct: 362 caattcattaaaatgcaagagtttggaggcatatcgagctcaagctttagctctgcatca 303

              
Query: 634 gac 636
           |||
Sbjct: 302 gac 300



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                       
Query: 307 ctagtggccttgagagacggtatgagtgcataaacctcttcaatggtctcaggcccaatg 366
           ||||||||||| || || ||||  || |||||||||||||||||||||||||| |||| |
Sbjct: 650 ctagtggccttcagggatggtactagcgcataaacctcttcaatggtctcaggtccaacg 591

                                                 
Query: 367 tttgctatcatgcatatctcgccatcattaacaccata 404
           || ||||||| ||| ||||| |||||| ||||||||||
Sbjct: 590 ttcgctatcaagcacatctctccatcactaacaccata 553

>gb|AY109627.1| Zea mays CL15212_1 mRNA sequence
          Length = 1147

 Score =  115 bits (58), Expect = 2e-22
 Identities = 82/90 (91%)
 Strand = Plus / Plus

                                                                       
Query: 304 gacctagtggccttgagagacggtatgagtgcataaacctcttcaatggtctcaggccca 363
           |||||| | ||||||||||| || |  ||||||||||||||||||| |||||||||||||
Sbjct: 426 gacctattagccttgagagatggcactagtgcataaacctcttcaacggtctcaggccca 485

                                         
Query: 364 atgtttgctatcatgcatatctcgccatca 393
           ||||||||||||||||||||||| ||||||
Sbjct: 486 atgtttgctatcatgcatatctctccatca 515



 Score =  109 bits (55), Expect = 1e-20
 Identities = 160/195 (82%)
 Strand = Plus / Plus

                                                                       
Query: 442 gcagaggtgaagtgattcccttcttttgcatatagaaaggccttgtcgaacgactcggga 501
           |||| |||||| ||||| || ||||||| |||  |||| || ||||| || ||||| |||
Sbjct: 564 gcagtggtgaaatgatttccatcttttgaatactgaaaagctttgtcaaaagactcagga 623

                                                                       
Query: 502 atttttatctttggatcctctgataagatagccatatgttcgtgaattttctgcaacatt 561
           ||||| ||||| || ||||||||||  || ||||| || ||||||||||  ||||| | |
Sbjct: 624 attttgatcttggggtcctctgatagtatggccatgtgctcgtgaatttcttgcaatagt 683

                                                                       
Query: 562 tctgctacttcacagttcgttaacagtttagaatttggagacatatcaagctgaagcttt 621
           || ||| ||||||| ||| ||| || | ||||||||||||  ||||||||||  ||||||
Sbjct: 684 tcagctgcttcacaattcattagcattctagaatttggagggatatcaagctctagcttt 743

                          
Query: 622 agttctgcatcagac 636
           |||||||||||||||
Sbjct: 744 agttctgcatcagac 758

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  101 bits (51), Expect = 3e-18
 Identities = 81/91 (89%)
 Strand = Plus / Plus

                                                                            
Query: 494      actcgggaatttttatctttggatcctctgataagatagccatatgttcgtgaattttct 553
                |||| |||||||| |||||||||||||||||||||||||||||||| || |||||||  |
Sbjct: 30073166 actctggaattttgatctttggatcctctgataagatagccatatgctcatgaatttctt 30073225

                                               
Query: 554      gcaacatttctgctacttcacagttcgttaa 584
                |||| | ||||||||||||||| ||| ||||
Sbjct: 30073226 gcaatagttctgctacttcacaattcattaa 30073256



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                    
Query: 334      gcataaacctcttcaatggtctcaggcccaatgtttgctatcatgcatatct 385
                |||||||||||||||||||||||||| |||| ||| ||||||| ||| ||||
Sbjct: 30072700 gcataaacctcttcaatggtctcaggtccaacgttcgctatcaagcacatct 30072751



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 254      ttattttagcaagggcagta 273
                ||||||||||||||||||||
Sbjct: 26041628 ttattttagcaagggcagta 26041647

>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0685G12
          Length = 149155

 Score =  101 bits (51), Expect = 3e-18
 Identities = 81/91 (89%)
 Strand = Plus / Plus

                                                                         
Query: 494   actcgggaatttttatctttggatcctctgataagatagccatatgttcgtgaattttct 553
             |||| |||||||| |||||||||||||||||||||||||||||||| || |||||||  |
Sbjct: 52763 actctggaattttgatctttggatcctctgataagatagccatatgctcatgaatttctt 52822

                                            
Query: 554   gcaacatttctgctacttcacagttcgttaa 584
             |||| | ||||||||||||||| ||| ||||
Sbjct: 52823 gcaatagttctgctacttcacaattcattaa 52853



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 334   gcataaacctcttcaatggtctcaggcccaatgtttgctatcatgcatatct 385
             |||||||||||||||||||||||||| |||| ||| ||||||| ||| ||||
Sbjct: 52297 gcataaacctcttcaatggtctcaggtccaacgttcgctatcaagcacatct 52348

>gb|AC160930.2| Mus musculus BAC clone RP24-383F22 from chromosome 14, complete sequence
          Length = 230236

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 554    gcaacatttctgctacttcac 574
              |||||||||||||||||||||
Sbjct: 161821 gcaacatttctgctacttcac 161841

>gb|BC061278.1| Xenopus tropicalis transmembrane 4 superfamily member 4, mRNA (cDNA
           clone MGC:75723 IMAGE:5380972), complete cds
          Length = 1403

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 241 cacttggaggcttttatttta 261
           |||||||||||||||||||||
Sbjct: 17  cacttggaggcttttatttta 37

>ref|XM_750867.1| Aspergillus fumigatus Af293 cell division control protein Cdc25
           (Afu2g16240) partial mRNA
          Length = 3756

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 285 gatcttgccttcattgatcga 305
           |||||||||||||||||||||
Sbjct: 999 gatcttgccttcattgatcga 979

>gb|AC122140.2| Mus musculus BAC clone RP24-270F2 from 17, complete sequence
          Length = 200761

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 156   atgaacatccatccatacacc 176
             |||||||||||||||||||||
Sbjct: 55010 atgaacatccatccatacacc 54990

>emb|AL390844.12| Human DNA sequence from clone RP11-255N24 on chromosome 9p13.3-21.3
             Contains a CMT1A duplicated region transcript 15 (CDRT15)
             pseudogene, a pseudogene similar to part of solute carrier
             family 4 (anion exchanger), member 1, adaptor protein
             (SLC4A1AP), a novel pseudogene and a RNA binding motif
             protein, X chromosome (RBMX) (HNRPG) pseudogene, complete
             sequence
          Length = 163677

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 546   aattttctgcaacatttctgc 566
             |||||||||||||||||||||
Sbjct: 85748 aattttctgcaacatttctgc 85728

>ref|NM_203627.1| Xenopus tropicalis transmembrane 4 superfamily member 4 (tm4sf4),
           mRNA
          Length = 1403

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 241 cacttggaggcttttatttta 261
           |||||||||||||||||||||
Sbjct: 17  cacttggaggcttttatttta 37

>dbj|AK162134.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length
            enriched library, clone:7420433P05 product:hypothetical
            protein, full insert sequence
          Length = 3093

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 554  gcaacatttctgctacttcac 574
            |||||||||||||||||||||
Sbjct: 2039 gcaacatttctgctacttcac 2059

>ref|XM_967418.1| PREDICTED: Tribolium castaneum similar to hepatocellular
           carcinoma-associated antigen 127 (LOC661245), mRNA
          Length = 1030

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 ataaacctcttcaatggtct 355
           ||||||||||||||||||||
Sbjct: 850 ataaacctcttcaatggtct 831

>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome
          Length = 1581384

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 336    ataaacctcttcaatggtct 355
              ||||||||||||||||||||
Sbjct: 427467 ataaacctcttcaatggtct 427448

>emb|BX511122.4| Zebrafish DNA sequence from clone CH211-129H1 in linkage group 7,
            complete sequence
          Length = 56808

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 587  gtttagaatttggagacata 606
            ||||||||||||||||||||
Sbjct: 3329 gtttagaatttggagacata 3310

>gb|AC110775.3| Homo sapiens BAC clone RP11-290O12 from 4, complete sequence
          Length = 210300

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   gaggcttttattttagcaag 266
             ||||||||||||||||||||
Sbjct: 20666 gaggcttttattttagcaag 20647

>gb|AC109037.6| Rattus norvegicus 18 BAC CH230-178G23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 208650

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 543   gtgaattttctgcaacattt 562
             ||||||||||||||||||||
Sbjct: 52818 gtgaattttctgcaacattt 52799

>dbj|AP004839.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0519A12
          Length = 156676

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   ttattttagcaagggcagta 273
             ||||||||||||||||||||
Sbjct: 49074 ttattttagcaagggcagta 49093

>dbj|AP005306.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0030D07
          Length = 133321

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 254    ttattttagcaagggcagta 273
              ||||||||||||||||||||
Sbjct: 105501 ttattttagcaagggcagta 105520

>emb|BX294439.7| Mouse DNA sequence from clone RP23-294J22 on chromosome 2, complete
            sequence
          Length = 11490

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 412  aggggtcccaggatttcttt 431
            ||||||||||||||||||||
Sbjct: 3463 aggggtcccaggatttcttt 3444

>emb|CR293517.8| Zebrafish DNA sequence from clone CH211-203D21 in linkage group 7,
             complete sequence
          Length = 78112

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 587   gtttagaatttggagacata 606
             ||||||||||||||||||||
Sbjct: 43770 gtttagaatttggagacata 43789

>emb|Z49554.1|SCYJR054W S.cerevisiae chromosome X reading frame ORF YJR054w
          Length = 3020

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 545 gaattttctgcaacatttct 564
           ||||||||||||||||||||
Sbjct: 148 gaattttctgcaacatttct 129

>emb|Z49553.1|SCYJR053W S.cerevisiae chromosome X reading frame ORF YJR053w
          Length = 2296

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 545  gaattttctgcaacatttct 564
            ||||||||||||||||||||
Sbjct: 2140 gaattttctgcaacatttct 2121

>emb|AJ620486.1| Olea europaea putative copia retrotransposon partial RNaseH
           pseudogene and LTR, clone Oec12
          Length = 354

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 244 ttggaggcttttattttagc 263
           ||||||||||||||||||||
Sbjct: 301 ttggaggcttttattttagc 320

>emb|AJ620485.1| Olea europaea putative copia retrotransposon partial RNaseH
           pseudogene and LTR, clone Oec11
          Length = 355

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 244 ttggaggcttttattttagc 263
           ||||||||||||||||||||
Sbjct: 301 ttggaggcttttattttagc 320

>gb|L47993.1|YSCORFSAA Saccharomyces cerevisiae ORF genes, complete cds
          Length = 61989

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 545 gaattttctgcaacatttct 564
           ||||||||||||||||||||
Sbjct: 151 gaattttctgcaacatttct 132

>gb|L36344.1|YSCTGGMS Saccharomyces cerevisiae tRNA-Met, tRNA-Ser, tRNA-Gly genes and 24 ORFs
          Length = 42500

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 545   gaattttctgcaacatttct 564
             ||||||||||||||||||||
Sbjct: 42496 gaattttctgcaacatttct 42477


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,957,253
Number of Sequences: 3902068
Number of extensions: 5957253
Number of successful extensions: 101749
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101632
Number of HSP's gapped (non-prelim): 116
length of query: 637
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 614
effective length of database: 17,143,297,704
effective search space: 10525984790256
effective search space used: 10525984790256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)