ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags33h03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106405.1| Zea mays PCO131557 mRNA sequence Length = 797 Score = 256 bits (129), Expect = 9e-65 Identities = 237/273 (86%) Strand = Plus / Minus Query: 325 cccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcactcttt 384 |||| ||||||| || ||||||||||||||||| || ||||| ||||| || |||||||| Sbjct: 584 cccaaacttgcagactgggcacagtttctttctcctaagccactcgtcaatacactcttt 525 Query: 385 atggaacttgtgaaagcatggcaaagtgcggatggtatctccaaaagatggattttccag 444 |||||||||||||||||| |||||| |||||| |||||||| | ||| |||||||| || Sbjct: 524 atggaacttgtgaaagcaaggcaaatggcggatagtatctcccacagaaggattttcaag 465 Query: 445 gcagaccgcacaaggctcttcagtgctagttgactgaaatactgactgaggcaagttatt 504 |||||| | ||| || |||||| ||||| | ||||||| ||||||||| ||||| ||||| Sbjct: 464 gcagacagaacatggatcttcaatgctattggactgaactactgactgtggcaaattatt 405 Query: 505 gatctgactttccgaagcaccagtgtgctggtggttattttcatctagcgcaagtagcgc 564 |||||| ||||| |||||||||||||||||||||||||||||||| || ||||| || || Sbjct: 404 gatctggctttctgaagcaccagtgtgctggtggttattttcatccagagcaagcagtgc 345 Query: 565 atcataatcatttaaatcaatattaggttgaat 597 |||||| |||||||| ||||| || |||||||| Sbjct: 344 atcatagtcatttaagtcaatgtttggttgaat 312
>ref|XM_473145.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2193 Score = 252 bits (127), Expect = 1e-63 Identities = 246/285 (86%), Gaps = 3/285 (1%) Strand = Plus / Minus Query: 323 atcccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcactct 382 |||||| |||||||||| || || |||||||| ||||| ||||||||||| ||||| ||| Sbjct: 2186 atcccagacttgcaaactggacatagtttcttccttcttagccattcgtctatgcattct 2127 Query: 383 ttatggaacttgtgaaagcatggcaaagtgcggatggtatctccaaaagatggattttcc 442 ||||||||| |||||||||||||||| |||||| ||||| |||| ||| ||||| || Sbjct: 2126 ttatggaacatgtgaaagcatggcaagcggcggatcgtatcaccaatagagggattatca 2067 Query: 443 aggcagaccgcacaaggctcttcagtgctagttgactgaaatactgactgaggcaagtta 502 ||||| || ||||| ||||||||| | | ||||||| | ||||||||||||||| ||| Sbjct: 2066 aggcaaactgcacacggctcttcaat---atttgactggattactgactgaggcaaatta 2010 Query: 503 ttgatctgactttccgaagcaccagtgtgctggtggttattttcatctagcgcaagtagc 562 |||||||| ||||| |||||||||| |||||||||||||||||||||| ||||| || Sbjct: 2009 ttgatctggctttctgaagcaccagcatgctggtggttattttcatctaatgcaagcagt 1950 Query: 563 gcatcataatcatttaaatcaatattaggttgaatatgcgcagca 607 |||||||||||||||| ||||||||||||||||||||| |||||| Sbjct: 1949 gcatcataatcatttagatcaatattaggttgaatatgtgcagca 1905
>dbj|AK073609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048J15, full insert sequence Length = 2753 Score = 252 bits (127), Expect = 1e-63 Identities = 246/285 (86%), Gaps = 3/285 (1%) Strand = Plus / Minus Query: 323 atcccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcactct 382 |||||| |||||||||| || || |||||||| ||||| ||||||||||| ||||| ||| Sbjct: 2487 atcccagacttgcaaactggacatagtttcttccttcttagccattcgtctatgcattct 2428 Query: 383 ttatggaacttgtgaaagcatggcaaagtgcggatggtatctccaaaagatggattttcc 442 ||||||||| |||||||||||||||| |||||| ||||| |||| ||| ||||| || Sbjct: 2427 ttatggaacatgtgaaagcatggcaagcggcggatcgtatcaccaatagagggattatca 2368 Query: 443 aggcagaccgcacaaggctcttcagtgctagttgactgaaatactgactgaggcaagtta 502 ||||| || ||||| ||||||||| | | ||||||| | ||||||||||||||| ||| Sbjct: 2367 aggcaaactgcacacggctcttcaat---atttgactggattactgactgaggcaaatta 2311 Query: 503 ttgatctgactttccgaagcaccagtgtgctggtggttattttcatctagcgcaagtagc 562 |||||||| ||||| |||||||||| |||||||||||||||||||||| ||||| || Sbjct: 2310 ttgatctggctttctgaagcaccagcatgctggtggttattttcatctaatgcaagcagt 2251 Query: 563 gcatcataatcatttaaatcaatattaggttgaatatgcgcagca 607 |||||||||||||||| ||||||||||||||||||||| |||||| Sbjct: 2250 gcatcataatcatttagatcaatattaggttgaatatgtgcagca 2206
>dbj|AK067002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091B14, full insert sequence Length = 3674 Score = 252 bits (127), Expect = 1e-63 Identities = 246/285 (86%), Gaps = 3/285 (1%) Strand = Plus / Minus Query: 323 atcccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcactct 382 |||||| |||||||||| || || |||||||| ||||| ||||||||||| ||||| ||| Sbjct: 3408 atcccagacttgcaaactggacatagtttcttccttcttagccattcgtctatgcattct 3349 Query: 383 ttatggaacttgtgaaagcatggcaaagtgcggatggtatctccaaaagatggattttcc 442 ||||||||| |||||||||||||||| |||||| ||||| |||| ||| ||||| || Sbjct: 3348 ttatggaacatgtgaaagcatggcaagcggcggatcgtatcaccaatagagggattatca 3289 Query: 443 aggcagaccgcacaaggctcttcagtgctagttgactgaaatactgactgaggcaagtta 502 ||||| || ||||| ||||||||| | | ||||||| | ||||||||||||||| ||| Sbjct: 3288 aggcaaactgcacacggctcttcaat---atttgactggattactgactgaggcaaatta 3232 Query: 503 ttgatctgactttccgaagcaccagtgtgctggtggttattttcatctagcgcaagtagc 562 |||||||| ||||| |||||||||| |||||||||||||||||||||| ||||| || Sbjct: 3231 ttgatctggctttctgaagcaccagcatgctggtggttattttcatctaatgcaagcagt 3172 Query: 563 gcatcataatcatttaaatcaatattaggttgaatatgcgcagca 607 |||||||||||||||| ||||||||||||||||||||| |||||| Sbjct: 3171 gcatcataatcatttagatcaatattaggttgaatatgtgcagca 3127
>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05, complete sequence Length = 158601 Score = 115 bits (58), Expect = 2e-22 Identities = 85/94 (90%) Strand = Plus / Plus Query: 484 tactgactgaggcaagttattgatctgactttccgaagcaccagtgtgctggtggttatt 543 ||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||||||| Sbjct: 33970 tactgactgaggcaaattattgatctggctttctgaagcaccagcatgctggtggttatt 34029 Query: 544 ttcatctagcgcaagtagcgcatcataatcattt 577 |||||||| ||||| || ||||||||||||||| Sbjct: 34030 ttcatctaatgcaagcagtgcatcataatcattt 34063 Score = 69.9 bits (35), Expect = 1e-08 Identities = 74/87 (85%) Strand = Plus / Plus Query: 380 tctttatggaacttgtgaaagcatggcaaagtgcggatggtatctccaaaagatggattt 439 |||||||||||| |||||||||||||||| |||||| ||||| |||| ||| ||||| Sbjct: 33775 tctttatggaacatgtgaaagcatggcaagcggcggatcgtatcaccaatagagggatta 33834 Query: 440 tccaggcagaccgcacaaggctcttca 466 || ||||| || ||||| ||||||||| Sbjct: 33835 tcaaggcaaactgcacacggctcttca 33861 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 323 atcccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcact 380 |||||| |||||||||| || || |||||||| ||||| ||||||||||| ||||||| Sbjct: 33597 atcccagacttgcaaactggacatagtttcttccttcttagccattcgtctatgcact 33654 Score = 48.1 bits (24), Expect = 0.042 Identities = 27/28 (96%) Strand = Plus / Plus Query: 580 atcaatattaggttgaatatgcgcagca 607 ||||||||||||||||||||| |||||| Sbjct: 34353 atcaatattaggttgaatatgtgcagca 34380
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 115 bits (58), Expect = 2e-22 Identities = 85/94 (90%) Strand = Plus / Plus Query: 484 tactgactgaggcaagttattgatctgactttccgaagcaccagtgtgctggtggttatt 543 ||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||||||| Sbjct: 25547773 tactgactgaggcaaattattgatctggctttctgaagcaccagcatgctggtggttatt 25547832 Query: 544 ttcatctagcgcaagtagcgcatcataatcattt 577 |||||||| ||||| || ||||||||||||||| Sbjct: 25547833 ttcatctaatgcaagcagtgcatcataatcattt 25547866 Score = 69.9 bits (35), Expect = 1e-08 Identities = 74/87 (85%) Strand = Plus / Plus Query: 380 tctttatggaacttgtgaaagcatggcaaagtgcggatggtatctccaaaagatggattt 439 |||||||||||| |||||||||||||||| |||||| ||||| |||| ||| ||||| Sbjct: 25547578 tctttatggaacatgtgaaagcatggcaagcggcggatcgtatcaccaatagagggatta 25547637 Query: 440 tccaggcagaccgcacaaggctcttca 466 || ||||| || ||||| ||||||||| Sbjct: 25547638 tcaaggcaaactgcacacggctcttca 25547664 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 323 atcccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcact 380 |||||| |||||||||| || || |||||||| ||||| ||||||||||| ||||||| Sbjct: 25547400 atcccagacttgcaaactggacatagtttcttccttcttagccattcgtctatgcact 25547457 Score = 48.1 bits (24), Expect = 0.042 Identities = 27/28 (96%) Strand = Plus / Plus Query: 580 atcaatattaggttgaatatgcgcagca 607 ||||||||||||||||||||| |||||| Sbjct: 25548156 atcaatattaggttgaatatgtgcagca 25548183
>gb|AF334831.1| Castanea sativa STK1 mRNA, partial cds Length = 758 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 104 ggatatacaaaaatggtgaaga 125 |||||||||||||||||||||| Sbjct: 581 ggatatacaaaaatggtgaaga 602
>dbj|AP001541.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-683O4, complete sequence Length = 212884 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 478 ctgaaatactgactgaggcaag 499 |||||||||||||||||||||| Sbjct: 78502 ctgaaatactgactgaggcaag 78481
>gb|AC117523.2| Homo sapiens chromosome 5 clone RP11-1084O22, complete sequence Length = 124957 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 568 ataatcatttaaatcaatattaggt 592 |||||||| |||||||||||||||| Sbjct: 31779 ataatcatgtaaatcaatattaggt 31755
>gb|AC094096.2| Homo sapiens chromosome 5 clone RP11-11P11, complete sequence Length = 156194 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 568 ataatcatttaaatcaatattaggt 592 |||||||| |||||||||||||||| Sbjct: 70330 ataatcatgtaaatcaatattaggt 70306
>gb|AC132271.5| Mus musculus BAC clone RP24-338E23 from 5, complete sequence Length = 173029 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 gatggattttccaggcagacc 451 ||||||||||||||||||||| Sbjct: 115994 gatggattttccaggcagacc 115974
>gb|DQ004855.1| Listeria bacteriophage P100, complete genome Length = 131384 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 280 ggaagaacacgaaaactaaaa 300 ||||||||||||||||||||| Sbjct: 113003 ggaagaacacgaaaactaaaa 112983 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,796,272 Number of Sequences: 3902068 Number of extensions: 6796272 Number of successful extensions: 145983 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 145927 Number of HSP's gapped (non-prelim): 53 length of query: 738 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 715 effective length of database: 17,143,297,704 effective search space: 12257457858360 effective search space used: 12257457858360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
