ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MS2_ARATH (Q08891) Male sterility protein 2 48 6e-06
2ACCO2_DORSP (Q39705) 1-aminocyclopropane-1-carboxylate oxidase 2... 28 6.2
3DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-re... 28 8.1

>MS2_ARATH (Q08891) Male sterility protein 2|
          Length = 616

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 22/65 (33%), Positives = 36/65 (55%)
 Frame = -1

Query: 248 LYGPFSLFKGXFDDVNLNKLRLAMVDGDHANVNVGGLFNFDPKTLDWXDYFFKVHIPGVM 69
           +Y P++ + G FD+ N  +L   M + +         F FD  +++W DY   VHIPG+ 
Sbjct: 555 IYEPYTFYGGRFDNSNTQRLMENMSEDEKRE------FGFDVGSINWTDYITNVHIPGLR 608

Query: 68  KYVLK 54
           ++VLK
Sbjct: 609 RHVLK 613



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>ACCO2_DORSP (Q39705) 1-aminocyclopropane-1-carboxylate oxidase 2 (EC 1.14.17.4)|
           (ACC oxidase 2) (Ethylene-forming enzyme) (EFE)
          Length = 325

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 167 DHANVNVGGLFNFDPKTLDWXDYFFKVHIP 78
           + A+  +  + N DP  LDW   FF  H+P
Sbjct: 69  EFASKTLDSVENVDPDNLDWESTFFLRHLP 98



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>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
            (DRF1) (mDIA1) (p140mDIA)
          Length = 1255

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 197  NKLRLAMVDGDHANVNVGGLFNFDPKTLDWXDYFFKVH 84
            NKLR+   + +     +G  F FDPK L   ++F  +H
Sbjct: 1085 NKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLH 1122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,088,607
Number of Sequences: 219361
Number of extensions: 350884
Number of successful extensions: 888
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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