>MUTL_SYNY3 (P73349) DNA mismatch repair protein mutL|
          Length = 556

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +3

Query: 237 QSTMNLLADTKGFHHACLQNLPPGDNQFFDKLAEGANLPKLPQFVLKEFRASIPR---PL 407
           Q+T   L+ T G+   C  + P  D           N+P+L Q +L  F  ++PR   PL
Sbjct: 236 QATSAQLSLTFGYPDRC--HRPRPDWLIIAINGRPVNVPELTQTILAVFHRTLPRQRYPL 293

Query: 408 LFHAARAIPPQCAD 449
            F A   +PPQC D
Sbjct: 294 CF-AHWQLPPQCID 306

>Y1681_METJA (Q59075) Hypothetical protein MJ1681|
          Length = 380

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -3

Query: 597 DSLVNTLFTDLISEKSEASFTACGILKKL 511
           D  VNT+F  L  +K EASF+ CG+L  L
Sbjct: 144 DEEVNTIFHRLPLKKGEASFSGCGMLNPL 172

>VL1_HPV66 (Q80961) Major capsid protein L1|
          Length = 503

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 222 PQSKIQSTMNLLADTKGFHHACLQNLPPGDNQFFDKLAEGA--NLPKLPQFVLKEFRASI 395
           P SK+ +T   +  T  F+HA    L    + ++     G   N+PK+  +  + FR  +
Sbjct: 17  PVSKVVATDTYVKRTSIFYHAGSSRLLAVGHPYYSVSKSGTKTNIPKVSAYQYRVFRVRL 76

Query: 396 PRPLLF 413
           P P  F
Sbjct: 77  PDPNKF 82

>YGN1_YEAST (P53127) Hypothetical 163.2 kDa protein in RPL1B-CEG1 intergenic|
           region
          Length = 1403

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 434 WNCASGM-KQERTRYRRTEFLEDKLRQLREIRALCQLIEEL 315
           W C S + KQ+ T+     FLE++  +L  IR++ Q IEE+
Sbjct: 361 WTCFSCLQKQQGTKDSHVRFLEEQALELDFIRSVRQKIEEI 401

>VL1_HPV17 (Q02514) Major capsid protein L1|
          Length = 507

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +3

Query: 222 PQSKIQSTMNLLADTKGFHHACLQNLPPGDNQFFD-KLAEGANL--PKLPQFVLKEFRAS 392
           P +++QST   +  T  F+HA    L    + F+D +  +G  +  PK+     + FR +
Sbjct: 18  PVARVQSTDEYVERTNIFYHAMSDRLLTVGHPFYDVRSTDGLRIEVPKVSGNQYRAFRVT 77

Query: 393 IPRPLLFHAA 422
           +P P  F  A
Sbjct: 78  LPDPNKFALA 87

>VL1_HPV18 (P06794) Major capsid protein L1|
          Length = 568

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +3

Query: 228 SKIQSTMNLLADTKGFHHACLQNLPPGDNQFFDKLAEGAN---LPKLPQFVLKEFRASIP 398
           +++ +T + +  T  F+HA    L    N +F   A G N   +PK+  +  + FR  +P
Sbjct: 80  ARVVNTDDYVTPTSIFYHAGSSRLLTVGNPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLP 139

Query: 399 RPLLF 413
            P  F
Sbjct: 140 DPNKF 144


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,434,734
Number of Sequences: 219361
Number of extensions: 1694281
Number of successful extensions: 4361
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4359
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)