| Clone Name | rbags33f23 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT009510.7| Mouse DNA sequence from clone RP23-47H16 on chromosome 14, complete sequence Length = 209623 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 218 acaaccacaaagcaagatccag 239 |||||||||||||||||||||| Sbjct: 94199 acaaccacaaagcaagatccag 94220
>gb|AC129471.1| Homo sapiens chromosome 5 clone RP11-352J21, complete sequence Length = 180334 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 tgcaaaacaaccacaaagcaa 232 ||||||||||||||||||||| Sbjct: 120810 tgcaaaacaaccacaaagcaa 120830
>gb|AC016617.6| Homo sapiens chromosome 5 clone CTD-2239O16, complete sequence Length = 114972 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 tgcaaaacaaccacaaagcaa 232 ||||||||||||||||||||| Sbjct: 68576 tgcaaaacaaccacaaagcaa 68596
>gb|AC012506.9| Homo sapiens BAC clone RP11-498O22 from 2, complete sequence Length = 197303 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 acaaagcccagggatttcagg 483 ||||||||||||||||||||| Sbjct: 163067 acaaagcccagggatttcagg 163087
>gb|AC124337.15| Mus musculus chromosome 6, clone RP24-199P17, complete sequence Length = 171534 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 617 agatgtgggaattgtgcaac 636 |||||||||||||||||||| Sbjct: 19865 agatgtgggaattgtgcaac 19846
>gb|AC123874.4| Mus musculus BAC clone RP23-265M17 from 6, complete sequence Length = 193712 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 617 agatgtgggaattgtgcaac 636 |||||||||||||||||||| Sbjct: 96407 agatgtgggaattgtgcaac 96426
>emb|AL136172.16| Human DNA sequence from clone RP4-621N11 on chromosome 20 Contains the 5' end of the RBL1 gene for retinoblastoma-like protein 1, the 3' end of the C20orf132 gene and three CpG islands, complete sequence Length = 69413 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 tacaaaatttacccccgggc 308 |||||||||||||||||||| Sbjct: 46838 tacaaaatttacccccgggc 46819
>gb|AC093010.7| Homo sapiens 3 BAC RP11-553L6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161077 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 604 aagaactaatagaagatgtgggaa 627 ||||||||| |||||||||||||| Sbjct: 12655 aagaactaaaagaagatgtgggaa 12632
>gb|AC095058.3| Homo sapiens BAC clone RP11-416A5 from 4, complete sequence Length = 172472 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ttgctgcaaagagatggttt 189 |||||||||||||||||||| Sbjct: 36125 ttgctgcaaagagatggttt 36106
>dbj|AK144629.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730014H17 product:unclassifiable, full insert sequence Length = 982 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 acaatgaatttgcttgccgacaca 266 |||||||||||| ||||||||||| Sbjct: 174 acaatgaatttggttgccgacaca 197
>gb|AC008571.6| Homo sapiens chromosome 5 clone CTC-550M4, complete sequence Length = 214267 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 aaaacaaccacaaagcaaga 234 |||||||||||||||||||| Sbjct: 192973 aaaacaaccacaaagcaaga 192954
>gb|AC129951.9| Mus musculus chromosome 15, clone RP23-127B14, complete sequence Length = 211987 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 acaatgaatttgcttgccgacaca 266 |||||||||||| ||||||||||| Sbjct: 188977 acaatgaatttggttgccgacaca 188954
>gb|AC092418.3| Homo sapiens chromosome 3 clone RP11-229A12, complete sequence Length = 164500 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 atttcagggatttcatgctt 495 |||||||||||||||||||| Sbjct: 129770 atttcagggatttcatgctt 129789
>emb|AL929287.5| Zebrafish DNA sequence from clone CH211-67L8, complete sequence Length = 193201 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 169 attgctgcaaagagatggtttacc 192 ||||||| |||||||||||||||| Sbjct: 133353 attgctgtaaagagatggtttacc 133376
>dbj|AB015475.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMN10 Length = 84325 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 577 caaagtattaaccagtgagt 596 |||||||||||||||||||| Sbjct: 20166 caaagtattaaccagtgagt 20147
>gb|AC117614.12| Mus musculus chromosome 5, clone RP23-110C17, complete sequence Length = 222809 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 acaatgaatttgcttgccgacaca 266 |||||||||||| ||||||||||| Sbjct: 134763 acaatgaatttggttgccgacaca 134740 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,366,733 Number of Sequences: 3902068 Number of extensions: 4366733 Number of successful extensions: 76279 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76249 Number of HSP's gapped (non-prelim): 30 length of query: 680 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 657 effective length of database: 17,143,297,704 effective search space: 11263146591528 effective search space used: 11263146591528 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)