| Clone Name | rbags33f13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044N06, full insert sequence Length = 2325 Score = 464 bits (234), Expect = e-127 Identities = 363/406 (89%) Strand = Plus / Minus Query: 235 tcatattcagcgtccactgctgctacttgtctcttgggcacaaccatccttgagagcatc 294 ||||||||| |||||||||||||||||||||| ||||||||||||||||||| || || Sbjct: 1818 tcatattcaatgtccactgctgctacttgtctcatgggcacaaccatccttgattgcttc 1759 Query: 295 ttgagcttcattctccatgtctaaagaaagcaacgctgcagcttgaaggtaaaatgcagt 354 ||||||||||||||||||| |||||||||||| || ||||| ||||| ||||||||||| Sbjct: 1758 ttgagcttcattctccatgcctaaagaaagcagagcagcagcctgaagataaaatgcagt 1699 Query: 355 cggccatgtcggagatattactagtgcctgcattgcatcactgagagcctgttctgccat 414 |||||||| |||||||||||||| || ||||| |||||||||||||| ||||||||| | Sbjct: 1698 tggccatgttggagatattactagcgcttgcatcgcatcactgagagcttgttctgcctt 1639 Query: 415 gtcattcatcagatatgataggcaacggcgggcataaatggtgggggaaaccatcgtgcc 474 |||||||||||||||||| |||||||| || ||||||||||| || ||||||||||| || Sbjct: 1638 gtcattcatcagatatgacaggcaacgccgcgcataaatggtcggagaaaccatcgtacc 1579 Query: 475 gacttcaatgaactgagagtaacaatctatagcagtagtaaaatccttttgccgaaatgc 534 ||||||||||||||||| ||||| || || |||| || || |||||||| ||||| || Sbjct: 1578 aacttcaatgaactgagaataacagtcaattgcagaagagaagtccttttgtcgaaaagc 1519 Query: 535 actgtcacccttcttctttgaggttaatgtgtcttgcatttgattggtccacatctgaaa 594 | |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| Sbjct: 1518 attgtcacccttcttctttgagttcaatgtatcttgcatttgattggtccacatctgaaa 1459 Query: 595 tgaaagctcatttgcagttccctcatcatccttgtatcccgtcttt 640 ||| ||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 1458 tgagagctcatttgctgttccctcatcatccttgtagcccgtcttt 1413
>ref|XM_474410.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1479 Score = 458 bits (231), Expect = e-125 Identities = 354/395 (89%) Strand = Plus / Minus Query: 246 gtccactgctgctacttgtctcttgggcacaaccatccttgagagcatcttgagcttcat 305 |||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||| Sbjct: 1474 gtccactgctgctacttgtctcatgggcacaaccatccttgattgcttcttgagcttcat 1415 Query: 306 tctccatgtctaaagaaagcaacgctgcagcttgaaggtaaaatgcagtcggccatgtcg 365 |||||||| |||||||||||| || ||||| ||||| ||||||||||| |||||||| | Sbjct: 1414 tctccatgcctaaagaaagcagagcagcagcctgaagataaaatgcagttggccatgttg 1355 Query: 366 gagatattactagtgcctgcattgcatcactgagagcctgttctgccatgtcattcatca 425 ||||||||||||| || ||||| |||||||||||||| ||||||||| |||||||||||| Sbjct: 1354 gagatattactagcgcttgcatcgcatcactgagagcttgttctgccttgtcattcatca 1295 Query: 426 gatatgataggcaacggcgggcataaatggtgggggaaaccatcgtgccgacttcaatga 485 ||||||| |||||||| || ||||||||||| || ||||||||||| || |||||||||| Sbjct: 1294 gatatgacaggcaacgccgcgcataaatggtcggagaaaccatcgtaccaacttcaatga 1235 Query: 486 actgagagtaacaatctatagcagtagtaaaatccttttgccgaaatgcactgtcaccct 545 ||||||| ||||| || || |||| || || |||||||| ||||| ||| ||||||||| Sbjct: 1234 actgagaataacagtcaattgcagaagagaagtccttttgtcgaaaagcattgtcaccct 1175 Query: 546 tcttctttgaggttaatgtgtcttgcatttgattggtccacatctgaaatgaaagctcat 605 ||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 1174 tcttctttgagttcaatgtatcttgcatttgattggtccacatctgaaatgagagctcat 1115 Query: 606 ttgcagttccctcatcatccttgtatcccgtcttt 640 |||| |||||||||||||||||||| ||||||||| Sbjct: 1114 ttgctgttccctcatcatccttgtagcccgtcttt 1080
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 299 bits (151), Expect = 6e-78 Identities = 229/255 (89%) Strand = Plus / Minus Query: 235 tcatattcagcgtccactgctgctacttgtctcttgggcacaaccatccttgagagcatc 294 ||||||||| |||||||||||||||||||||| ||||||||||||||||||| || || Sbjct: 34983856 tcatattcaatgtccactgctgctacttgtctcatgggcacaaccatccttgattgcttc 34983797 Query: 295 ttgagcttcattctccatgtctaaagaaagcaacgctgcagcttgaaggtaaaatgcagt 354 ||||||||||||||||||| |||||||||||| || ||||| ||||| ||||||||||| Sbjct: 34983796 ttgagcttcattctccatgcctaaagaaagcagagcagcagcctgaagataaaatgcagt 34983737 Query: 355 cggccatgtcggagatattactagtgcctgcattgcatcactgagagcctgttctgccat 414 |||||||| |||||||||||||| || ||||| |||||||||||||| ||||||||| | Sbjct: 34983736 tggccatgttggagatattactagcgcttgcatcgcatcactgagagcttgttctgcctt 34983677 Query: 415 gtcattcatcagatatgataggcaacggcgggcataaatggtgggggaaaccatcgtgcc 474 |||||||||||||||||| |||||||| || ||||||||||| || ||||||||||| || Sbjct: 34983676 gtcattcatcagatatgacaggcaacgccgcgcataaatggtcggagaaaccatcgtacc 34983617 Query: 475 gacttcaatgaactg 489 |||||||||||||| Sbjct: 34983616 aacttcaatgaactg 34983602 Score = 113 bits (57), Expect = 7e-22 Identities = 78/85 (91%) Strand = Plus / Minus Query: 518 tccttttgccgaaatgcactgtcacccttcttctttgaggttaatgtgtcttgcatttga 577 |||||||| ||||| ||| |||||||||||||||||||| | ||||| |||||||||||| Sbjct: 34983317 tccttttgtcgaaaagcattgtcacccttcttctttgagttcaatgtatcttgcatttga 34983258 Query: 578 ttggtccacatctgaaatgaaagct 602 |||||||||||||||||||| |||| Sbjct: 34983257 ttggtccacatctgaaatgagagct 34983233 Score = 63.9 bits (32), Expect = 6e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 601 ctcatttgcagttccctcatcatccttgtatcccgtcttt 640 ||||||||| |||||||||||||||||||| ||||||||| Sbjct: 34982641 ctcatttgctgttccctcatcatccttgtagcccgtcttt 34982602 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 566 tcttgcatttgattggtccacatctgaaatga 597 ||||||||||||||||||||||||| |||||| Sbjct: 30907031 tcttgcatttgattggtccacatctcaaatga 30907000 Score = 48.1 bits (24), Expect = 0.036 Identities = 77/94 (81%), Gaps = 3/94 (3%) Strand = Plus / Plus Query: 383 tgcattgcatcactgagagcctgttctg---ccatgtcattcatcagatatgataggcaa 439 ||||||||||||| |||||| |||| | ||||| |||||||||||||||| |||| | Sbjct: 22748651 tgcattgcatcaccgagagcttgttgtcttcccatgccattcatcagatatgacaggcga 22748710 Query: 440 cggcgggcataaatggtgggggaaaccatcgtgc 473 || | ||||||||| ||||||||||| |||| Sbjct: 22748711 cgttgcgcataaatgacaggggaaaccatagtgc 22748744
>emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0913C04, complete sequence Length = 94152 Score = 299 bits (151), Expect = 6e-78 Identities = 229/255 (89%) Strand = Plus / Minus Query: 235 tcatattcagcgtccactgctgctacttgtctcttgggcacaaccatccttgagagcatc 294 ||||||||| |||||||||||||||||||||| ||||||||||||||||||| || || Sbjct: 14025 tcatattcaatgtccactgctgctacttgtctcatgggcacaaccatccttgattgcttc 13966 Query: 295 ttgagcttcattctccatgtctaaagaaagcaacgctgcagcttgaaggtaaaatgcagt 354 ||||||||||||||||||| |||||||||||| || ||||| ||||| ||||||||||| Sbjct: 13965 ttgagcttcattctccatgcctaaagaaagcagagcagcagcctgaagataaaatgcagt 13906 Query: 355 cggccatgtcggagatattactagtgcctgcattgcatcactgagagcctgttctgccat 414 |||||||| |||||||||||||| || ||||| |||||||||||||| ||||||||| | Sbjct: 13905 tggccatgttggagatattactagcgcttgcatcgcatcactgagagcttgttctgcctt 13846 Query: 415 gtcattcatcagatatgataggcaacggcgggcataaatggtgggggaaaccatcgtgcc 474 |||||||||||||||||| |||||||| || ||||||||||| || ||||||||||| || Sbjct: 13845 gtcattcatcagatatgacaggcaacgccgcgcataaatggtcggagaaaccatcgtacc 13786 Query: 475 gacttcaatgaactg 489 |||||||||||||| Sbjct: 13785 aacttcaatgaactg 13771 Score = 113 bits (57), Expect = 7e-22 Identities = 78/85 (91%) Strand = Plus / Minus Query: 518 tccttttgccgaaatgcactgtcacccttcttctttgaggttaatgtgtcttgcatttga 577 |||||||| ||||| ||| |||||||||||||||||||| | ||||| |||||||||||| Sbjct: 13486 tccttttgtcgaaaagcattgtcacccttcttctttgagttcaatgtatcttgcatttga 13427 Query: 578 ttggtccacatctgaaatgaaagct 602 |||||||||||||||||||| |||| Sbjct: 13426 ttggtccacatctgaaatgagagct 13402 Score = 63.9 bits (32), Expect = 6e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 601 ctcatttgcagttccctcatcatccttgtatcccgtcttt 640 ||||||||| |||||||||||||||||||| ||||||||| Sbjct: 12810 ctcatttgctgttccctcatcatccttgtagcccgtcttt 12771
>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09, complete sequence Length = 145391 Score = 299 bits (151), Expect = 6e-78 Identities = 229/255 (89%) Strand = Plus / Minus Query: 235 tcatattcagcgtccactgctgctacttgtctcttgggcacaaccatccttgagagcatc 294 ||||||||| |||||||||||||||||||||| ||||||||||||||||||| || || Sbjct: 42906 tcatattcaatgtccactgctgctacttgtctcatgggcacaaccatccttgattgcttc 42847 Query: 295 ttgagcttcattctccatgtctaaagaaagcaacgctgcagcttgaaggtaaaatgcagt 354 ||||||||||||||||||| |||||||||||| || ||||| ||||| ||||||||||| Sbjct: 42846 ttgagcttcattctccatgcctaaagaaagcagagcagcagcctgaagataaaatgcagt 42787 Query: 355 cggccatgtcggagatattactagtgcctgcattgcatcactgagagcctgttctgccat 414 |||||||| |||||||||||||| || ||||| |||||||||||||| ||||||||| | Sbjct: 42786 tggccatgttggagatattactagcgcttgcatcgcatcactgagagcttgttctgcctt 42727 Query: 415 gtcattcatcagatatgataggcaacggcgggcataaatggtgggggaaaccatcgtgcc 474 |||||||||||||||||| |||||||| || ||||||||||| || ||||||||||| || Sbjct: 42726 gtcattcatcagatatgacaggcaacgccgcgcataaatggtcggagaaaccatcgtacc 42667 Query: 475 gacttcaatgaactg 489 |||||||||||||| Sbjct: 42666 aacttcaatgaactg 42652 Score = 113 bits (57), Expect = 7e-22 Identities = 78/85 (91%) Strand = Plus / Minus Query: 518 tccttttgccgaaatgcactgtcacccttcttctttgaggttaatgtgtcttgcatttga 577 |||||||| ||||| ||| |||||||||||||||||||| | ||||| |||||||||||| Sbjct: 42367 tccttttgtcgaaaagcattgtcacccttcttctttgagttcaatgtatcttgcatttga 42308 Query: 578 ttggtccacatctgaaatgaaagct 602 |||||||||||||||||||| |||| Sbjct: 42307 ttggtccacatctgaaatgagagct 42283 Score = 63.9 bits (32), Expect = 6e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 601 ctcatttgcagttccctcatcatccttgtatcccgtcttt 640 ||||||||| |||||||||||||||||||| ||||||||| Sbjct: 41691 ctcatttgctgttccctcatcatccttgtagcccgtcttt 41652
>gb|AY112335.1| Zea mays CL33679_1 mRNA sequence Length = 870 Score = 95.6 bits (48), Expect = 2e-16 Identities = 174/216 (80%) Strand = Plus / Minus Query: 274 acaaccatccttgagagcatcttgagcttcattctccatgtctaaagaaagcaacgctgc 333 ||||||||||||||| || ||||| ||||||||||||||| || || | | ||||| Sbjct: 236 acaaccatccttgagtgcttcttgtgcttcattctccatgccttgtgataatagtgctgc 177 Query: 334 agcttgaaggtaaaatgcagtcggccatgtcggagatattactagtgcctgcattgcatc 393 || ||||| || ||||| || | |||||| ||||||||||| | || | ||||||||| Sbjct: 176 tgcctgaagatagaatgctgttgaccatgtgggagatattaccaaagcattcattgcatc 117 Query: 394 actgagagcctgttctgccatgtcattcatcagatatgataggcaacggcgggcataaat 453 | | | |||| | || |||| |||||||||||||||| |||||||| || |||||||| Sbjct: 116 attcaatgcctcctgtggcatgccattcatcagatatgacaggcaacgtcgagcataaat 57 Query: 454 ggtgggggaaaccatcgtgccgacttcaatgaactg 489 ||| ||||||||||| || || |||||||| ||||| Sbjct: 56 ggttggggaaaccattgtaccaacttcaataaactg 21
>ref|NM_115263.2| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT3G54030 mRNA, complete cds Length = 1885 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 569 tgcatttgattggtccacatctgaaatgaaagctcatttgcagttccctcatcatccttg 628 ||||| |||||||||||||| ||||| || |||||||| ||| |||| |||||||||||| Sbjct: 1354 tgcatctgattggtccacatttgaaacgagagctcattggcaattccttcatcatccttg 1295 Query: 629 tatcc 633 ||||| Sbjct: 1294 tatcc 1290
>gb|AY054503.1| Arabidopsis thaliana protein kinase-like protein (At3g54030; F5K20_330) mRNA, complete cds Length = 1810 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 569 tgcatttgattggtccacatctgaaatgaaagctcatttgcagttccctcatcatccttg 628 ||||| |||||||||||||| ||||| || |||||||| ||| |||| |||||||||||| Sbjct: 1354 tgcatctgattggtccacatttgaaacgagagctcattggcaattccttcatcatccttg 1295 Query: 629 tatcc 633 ||||| Sbjct: 1294 tatcc 1290
>emb|BX824896.1|CNS0A4QG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH80ZF12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1880 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 569 tgcatttgattggtccacatctgaaatgaaagctcatttgcagttccctcatcatccttg 628 ||||| |||||||||||||| ||||| || |||||||| ||| |||| |||||||||||| Sbjct: 1337 tgcatctgattggtccacatttgaaacgagagctcattggcaattccttcatcatccttg 1278 Query: 629 tatcc 633 ||||| Sbjct: 1277 tatcc 1273
>gb|AY085422.1| Arabidopsis thaliana clone 150889 mRNA, complete sequence Length = 1776 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 569 tgcatttgattggtccacatctgaaatgaaagctcatttgcagttccctcatcatccttg 628 ||||| |||||||||||||| ||||| || |||||||| ||| |||| |||||||||||| Sbjct: 1319 tgcatctgattggtccacatttgaaacgagagctcattggcaattccttcatcatccttg 1260 Query: 629 tatcc 633 ||||| Sbjct: 1259 tatcc 1255
>gb|BT002089.1| Arabidopsis thaliana protein kinase-like protein (At3g54030) mRNA, complete cds Length = 1567 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 569 tgcatttgattggtccacatctgaaatgaaagctcatttgcagttccctcatcatccttg 628 ||||| |||||||||||||| ||||| || |||||||| ||| |||| |||||||||||| Sbjct: 1145 tgcatctgattggtccacatttgaaacgagagctcattggcaattccttcatcatccttg 1086 Query: 629 tatcc 633 ||||| Sbjct: 1085 tatcc 1081
>gb|AY775047.1| Nicotiana tabacum Avr9/Cf-9 rapidly elicited protein 261 (ACRE261) mRNA, partial cds Length = 724 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 569 tgcatttgattggtccacatctgaaatgaaagctcatttgcagttccctcatcatccttg 628 ||||| ||||| |||||||| || || ||||||||||| ||| |||| |||||||||||| Sbjct: 296 tgcatctgatttgtccacatttggaacgaaagctcattagcaattccttcatcatccttg 237 Query: 629 ta 630 || Sbjct: 236 ta 235 Score = 40.1 bits (20), Expect = 8.7 Identities = 65/80 (81%) Strand = Plus / Minus Query: 338 tgaaggtaaaatgcagtcggccatgtcggagatattactagtgcctgcattgcatcactg 397 ||||||||||||||||| ||||| |||||||| || | || ||||||||||| | Sbjct: 527 tgaaggtaaaatgcagttggccactcaggagatataacctgagcttgcattgcatcccct 468 Query: 398 agagcctgttctgccatgtc 417 ||||||| || ||||||||| Sbjct: 467 agagcctcttgtgccatgtc 448
>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03, complete sequence Length = 179798 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 566 tcttgcatttgattggtccacatctgaaatga 597 ||||||||||||||||||||||||| |||||| Sbjct: 174552 tcttgcatttgattggtccacatctcaaatga 174521
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 566 tcttgcatttgattggtccacatctgaaatga 597 ||||||||||||||||||||||||| |||||| Sbjct: 4399 tcttgcatttgattggtccacatctcaaatga 4368
>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete sequence Length = 134586 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 566 tcttgcatttgattggtccacatctgaaatga 597 ||||||||||||||||||||||||| |||||| Sbjct: 84025 tcttgcatttgattggtccacatctcaaatga 83994
>gb|AY954629.1| Glycine max TPR-containing protein kinase mRNA, complete cds, alternatively spliced Length = 1701 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Minus Query: 566 tcttgcatttgattggtccacatctgaaatgaaagctcatttgcagttccctcatcatcc 625 ||||| |||||||| |||||||| ||||| || |||||||||||| | ||||||||| Sbjct: 1233 tcttgtatttgatttgtccacatttgaaaggacagctcatttgcaacatcttcatcatcc 1174 Query: 626 ttgta 630 ||||| Sbjct: 1173 ttgta 1169
>gb|AY954628.1| Glycine max stress-inducible protein kinase mRNA, complete cds, alternatively spliced Length = 1666 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Minus Query: 566 tcttgcatttgattggtccacatctgaaatgaaagctcatttgcagttccctcatcatcc 625 ||||| |||||||| |||||||| ||||| || |||||||||||| | ||||||||| Sbjct: 1181 tcttgtatttgatttgtccacatttgaaaggacagctcatttgcaacatcttcatcatcc 1122 Query: 626 ttgta 630 ||||| Sbjct: 1121 ttgta 1117
>ref|XM_472715.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2535 Score = 48.1 bits (24), Expect = 0.036 Identities = 77/94 (81%), Gaps = 3/94 (3%) Strand = Plus / Minus Query: 383 tgcattgcatcactgagagcctgtt---ctgccatgtcattcatcagatatgataggcaa 439 ||||||||||||| |||||| |||| | ||||| |||||||||||||||| |||| | Sbjct: 1802 tgcattgcatcaccgagagcttgttgtcttcccatgccattcatcagatatgacaggcga 1743 Query: 440 cggcgggcataaatggtgggggaaaccatcgtgc 473 || | ||||||||| ||||||||||| |||| Sbjct: 1742 cgttgcgcataaatgacaggggaaaccatagtgc 1709
>emb|AL731584.3|OSJN00224 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006M15, complete sequence Length = 143109 Score = 48.1 bits (24), Expect = 0.036 Identities = 77/94 (81%), Gaps = 3/94 (3%) Strand = Plus / Plus Query: 383 tgcattgcatcactgagagcctgttctg---ccatgtcattcatcagatatgataggcaa 439 ||||||||||||| |||||| |||| | ||||| |||||||||||||||| |||| | Sbjct: 85847 tgcattgcatcaccgagagcttgttgtcttcccatgccattcatcagatatgacaggcga 85906 Query: 440 cggcgggcataaatggtgggggaaaccatcgtgc 473 || | ||||||||| ||||||||||| |||| Sbjct: 85907 cgttgcgcataaatgacaggggaaaccatagtgc 85940
>dbj|AK073191.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033016G07, full insert sequence Length = 1253 Score = 48.1 bits (24), Expect = 0.036 Identities = 77/94 (81%), Gaps = 3/94 (3%) Strand = Plus / Minus Query: 383 tgcattgcatcactgagagcctgtt---ctgccatgtcattcatcagatatgataggcaa 439 ||||||||||||| |||||| |||| | ||||| |||||||||||||||| |||| | Sbjct: 750 tgcattgcatcaccgagagcttgttgtcttcccatgccattcatcagatatgacaggcga 691 Query: 440 cggcgggcataaatggtgggggaaaccatcgtgc 473 || | ||||||||| ||||||||||| |||| Sbjct: 690 cgttgcgcataaatgacaggggaaaccatagtgc 657
>gb|AF081022.1|AF081022 Lycopersicon esculentum hypoxia-induced protein L31 mRNA, partial cds Length = 489 Score = 48.1 bits (24), Expect = 0.036 Identities = 33/36 (91%) Strand = Plus / Minus Query: 569 tgcatttgattggtccacatctgaaatgaaagctca 604 ||||| ||||| ||||||||||| |||||||||||| Sbjct: 249 tgcatctgatttgtccacatctggaatgaaagctca 214
>dbj|AP006113.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT45A24, TM0197, complete sequence Length = 112846 Score = 48.1 bits (24), Expect = 0.036 Identities = 39/44 (88%) Strand = Plus / Minus Query: 566 tcttgcatttgattggtccacatctgaaatgaaagctcatttgc 609 ||||| |||||||| |||||||| || ||||| ||||||||||| Sbjct: 18635 tcttgtatttgatttgtccacatttggaatgacagctcatttgc 18592
>dbj|AP004962.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT28H14, TM0141, complete sequence Length = 100810 Score = 48.1 bits (24), Expect = 0.036 Identities = 39/44 (88%) Strand = Plus / Plus Query: 566 tcttgcatttgattggtccacatctgaaatgaaagctcatttgc 609 ||||| |||||||| |||||||| || ||||| ||||||||||| Sbjct: 82195 tcttgtatttgatttgtccacatttggaatgatagctcatttgc 82238
>dbj|AP004946.1| Lotus japonicus genomic DNA, chromosome , clone:LjT34D11, TM0119, complete sequence Length = 109743 Score = 48.1 bits (24), Expect = 0.036 Identities = 39/44 (88%) Strand = Plus / Plus Query: 566 tcttgcatttgattggtccacatctgaaatgaaagctcatttgc 609 ||||| |||||||| |||||||| || ||||| ||||||||||| Sbjct: 44187 tcttgtatttgatttgtccacatttggaatgacagctcatttgc 44230
>gb|AC171735.1| Lycopersicon esculentum chromosome 11 clone C11HBa0119D16, complete sequence Length = 125830 Score = 48.1 bits (24), Expect = 0.036 Identities = 54/64 (84%) Strand = Plus / Minus Query: 539 tcacccttcttctttgaggttaatgtgtcttgcatttgattggtccacatctgaaatgaa 598 |||||||| ||||| ||| | || || || ||||| ||||| ||||||||||| |||||| Sbjct: 39446 tcaccctttttcttggagttcaacgtttcctgcatctgatttgtccacatctggaatgaa 39387 Query: 599 agct 602 |||| Sbjct: 39386 agct 39383
>ref|NM_105029.2| Arabidopsis thaliana ATP binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT1G63500 mRNA, complete cds Length = 1765 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 569 tgcatttgattggtccacatctgaaatgaaagctc 603 ||||| ||||||||||||||||| || |||||||| Sbjct: 944 tgcatctgattggtccacatctggaacgaaagctc 910
>gb|AY123429.1|AY123426S04 Papio anubis anubis neurofibromatosis type 2 region, section 4; and merlin (NF2) gene, exons 2 through 16 and complete cds Length = 100801 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 333 cagcttgaaggtaaaatgcagtc 355 ||||||||||||||||||||||| Sbjct: 83251 cagcttgaaggtaaaatgcagtc 83273
>ref|XM_753206.1| Ustilago maydis 521 hypothetical protein (UM02152.1) partial mRNA Length = 1875 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 282 ccttgagagcatcttgagcttc 303 |||||||||||||||||||||| Sbjct: 1683 ccttgagagcatcttgagcttc 1662
>gb|AC008047.3|AC008047 Genomic sequence for Arabidopsis thaliana BAC F2K11 from chromosome I, complete sequence Length = 100867 Score = 44.1 bits (22), Expect = 0.56 Identities = 31/34 (91%) Strand = Plus / Plus Query: 569 tgcatttgattggtccacatctgaaatgaaagct 602 ||||| ||||||||||||||||| || ||||||| Sbjct: 38849 tgcatctgattggtccacatctggaacgaaagct 38882
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 456 tgggggaaaccatcgtgccgac 477 |||||||||||||||||||||| Sbjct: 6728473 tgggggaaaccatcgtgccgac 6728452
>emb|AL390801.4|CNS06C7S Human chromosome 14 DNA sequence BAC R-728G21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 166847 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 caaccaaaactatcaaaactga 103 |||||||||||||||||||||| Sbjct: 134550 caaccaaaactatcaaaactga 134571
>gb|AC148246.3| Saimiri boliviensis boliviensis clone CH254-471K13, complete sequence Length = 177755 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 395 ctgagagcctgttctgccatgt 416 |||||||||||||||||||||| Sbjct: 169555 ctgagagcctgttctgccatgt 169534
>emb|AL049691.18|HSJ1123D4 Human DNA sequence from clone RP5-1123D4 on chromosome 20q12 Contains STSs and GSSs, complete sequence Length = 169243 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 558 ttaatgtgtcttgcatttgat 578 ||||||||||||||||||||| Sbjct: 50705 ttaatgtgtcttgcatttgat 50685
>emb|AL132960.2|ATF5K20 Arabidopsis thaliana DNA chromosome 3, BAC clone F5K20 Length = 119407 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 601 ctcatttgcagttccctcatcatccttgtatcc 633 |||||| ||| |||| ||||||||||||||||| Sbjct: 115419 ctcattggcaattccttcatcatccttgtatcc 115387
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 caagatatcagttcatattca 243 ||||||||||||||||||||| Sbjct: 1995540 caagatatcagttcatattca 1995520
>gb|AC023598.30| Homo sapiens 3 BAC RP11-221E20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 66685 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 550 ctttgaggttaatgtgtcttgcatt 574 ||||||||||||||||| ||||||| Sbjct: 39622 ctttgaggttaatgtgtattgcatt 39598
>dbj|AP003970.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-790I14, complete sequence Length = 168594 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 gcctgttctgccatgtcattc 421 ||||||||||||||||||||| Sbjct: 33037 gcctgttctgccatgtcattc 33057
>dbj|AP001257.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-100I11, complete sequences Length = 146823 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 gcctgttctgccatgtcattc 421 ||||||||||||||||||||| Sbjct: 94089 gcctgttctgccatgtcattc 94109
>ref|NM_123491.2| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT5G41260 mRNA, complete cds Length = 2054 Score = 40.1 bits (20), Expect = 8.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 560 aatgtgtcttgcatttgattggtccacatctgaaatgaaagctc 603 |||||||| ||||| || | |||||||||||| || |||||||| Sbjct: 1233 aatgtgtcctgcatctggtcggtccacatctggaaagaaagctc 1190
>gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1653_D06, complete sequence Length = 71193 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 accaaaactatcaaaactgacata 107 ||||||||||||||||| |||||| Sbjct: 42455 accaaaactatcaaaaccgacata 42432
>gb|AC005737.1| Homo sapiens chromosome 16, BAC clone 97H22 (LANL), complete sequence Length = 174098 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 ggcataaatggtgggggaaa 464 |||||||||||||||||||| Sbjct: 58094 ggcataaatggtgggggaaa 58113
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 agcagtagtaaaatcctttt 524 |||||||||||||||||||| Sbjct: 2018390 agcagtagtaaaatcctttt 2018371
>ref|XM_420307.1| PREDICTED: Gallus gallus similar to putative copper efflux ATPase (LOC422333), mRNA Length = 3237 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 gttcagaaatccttgggaca 83 |||||||||||||||||||| Sbjct: 2954 gttcagaaatccttgggaca 2973
>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome Length = 2650701 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 aggcaacggcgggcataaat 453 |||||||||||||||||||| Sbjct: 171376 aggcaacggcgggcataaat 171395
>emb|CT010480.10| Mouse DNA sequence from clone RP23-313E11 on chromosome 13, complete sequence Length = 203636 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gaggtactacaaatttacaa 172 |||||||||||||||||||| Sbjct: 66734 gaggtactacaaatttacaa 66753
>gb|AC151526.7| Medicago truncatula clone mth2-78c9, complete sequence Length = 134556 Score = 40.1 bits (20), Expect = 8.7 Identities = 53/64 (82%) Strand = Plus / Plus Query: 539 tcacccttcttctttgaggttaatgtgtcttgcatttgattggtccacatctgaaatgaa 598 |||||||||||||| ||| || ||| | ||||| || ||||||||||| || |||||| Sbjct: 70769 tcacccttcttcttcgagtctattgtttgctgcatctggttggtccacatttggaatgaa 70828 Query: 599 agct 602 |||| Sbjct: 70829 agct 70832
>emb|Z49866.2|HSN73A10 Human DNA sequence from clone LL22NC03-73A10 on chromosome 22 Contains GSSs, complete sequence Length = 33685 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 cattgcatcactgagagcct 404 |||||||||||||||||||| Sbjct: 32858 cattgcatcactgagagcct 32839
>ref|XM_499718.1| Yarrowia lipolytica CLIB122, YALI0A03135g predicted mRNA Length = 1635 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tggaattatgtgcattttct 219 |||||||||||||||||||| Sbjct: 957 tggaattatgtgcattttct 976
>emb|AL365394.26| Human DNA sequence from clone RP11-275D4 on chromosome 13, complete sequence Length = 89746 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 399 gagcctgttctgccatgtcattca 422 |||||| ||||||||||||||||| Sbjct: 49141 gagcctcttctgccatgtcattca 49118
>emb|AL357513.8| Human DNA sequence from clone RP11-100A16 on chromosome 6 Contains a cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1) pseudogene, complete sequence Length = 177645 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 ctgcagcttgaaggtaaaat 349 |||||||||||||||||||| Sbjct: 34940 ctgcagcttgaaggtaaaat 34921
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 agcagtagtaaaatcctttt 524 |||||||||||||||||||| Sbjct: 1976641 agcagtagtaaaatcctttt 1976622
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 agcagtagtaaaatcctttt 524 |||||||||||||||||||| Sbjct: 1994037 agcagtagtaaaatcctttt 1994018
>gb|AC090396.9| Homo sapiens chromosome 18, clone RP11-868G15, complete sequence Length = 215375 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 attatgtgcattttctagacaaga 227 ||||||| |||||||||||||||| Sbjct: 93247 attatgtacattttctagacaaga 93270
>emb|BX666061.27| Mouse DNA sequence from clone RP24-427A22 on chromosome 4, complete sequence Length = 208482 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 gtgcattttctagacaagat 228 |||||||||||||||||||| Sbjct: 167318 gtgcattttctagacaagat 167299
>emb|AL824709.35| Mouse DNA sequence from clone RP23-388P16 on chromosome 4, complete sequence Length = 211610 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 gtgcattttctagacaagat 228 |||||||||||||||||||| Sbjct: 77559 gtgcattttctagacaagat 77540
>gb|AC087518.5| Homo sapiens chromosome , clone RP11-359E19, complete sequence Length = 168531 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 attctccatgtctaaagaaa 323 |||||||||||||||||||| Sbjct: 1525 attctccatgtctaaagaaa 1506
>gb|AC087559.69| Mus musculus strain C57BL/6J clone rp23-355o11 map 4, complete sequence Length = 227966 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gtgcattttctagacaagat 228 |||||||||||||||||||| Sbjct: 9770 gtgcattttctagacaagat 9789
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 ttctgccatgtcattcatca 425 |||||||||||||||||||| Sbjct: 183384 ttctgccatgtcattcatca 183365
>emb|AL935334.14| Zebrafish DNA sequence from clone CH211-199B20 in linkage group 14, complete sequence Length = 191828 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 163 aaatttacaataacaagatttggtaaaa 190 ||||||| ||||| |||||||||||||| Sbjct: 184572 aaatttaaaataaaaagatttggtaaaa 184599
>gb|AC007991.7|AC007991 Homo sapiens, clone RP11-44K6, complete sequence Length = 149008 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 attctccatgtctaaagaaa 323 |||||||||||||||||||| Sbjct: 92762 attctccatgtctaaagaaa 92743
>emb|BX248233.7| Zebrafish DNA sequence from clone CH211-125N11 in linkage group 10, complete sequence Length = 157428 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aatttacaataacaagattt 183 |||||||||||||||||||| Sbjct: 156642 aatttacaataacaagattt 156661
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 accaaaactatcaaaactgacata 107 ||||||||||||||||| |||||| Sbjct: 10825523 accaaaactatcaaaaccgacata 10825500
>emb|BX832626.1|CNS09YPT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH85ZD07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2064 Score = 40.1 bits (20), Expect = 8.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 560 aatgtgtcttgcatttgattggtccacatctgaaatgaaagctc 603 |||||||| ||||| || | |||||||||||| || |||||||| Sbjct: 1370 aatgtgtcctgcatctggtcggtccacatctggaaagaaagctc 1327
>gb|AC098932.3| Homo sapiens chromosome 1 clone RP11-480D2, complete sequence Length = 186291 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 aacatgttcagaaatccttg 78 |||||||||||||||||||| Sbjct: 154436 aacatgttcagaaatccttg 154455
>dbj|AK117571.1| Arabidopsis thaliana At5g41260 mRNA for putative protein kinase, complete cds, clone: RAFL17-22-E06 Length = 1169 Score = 40.1 bits (20), Expect = 8.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 560 aatgtgtcttgcatttgattggtccacatctgaaatgaaagctc 603 |||||||| ||||| || | |||||||||||| || |||||||| Sbjct: 347 aatgtgtcctgcatctggtcggtccacatctggaaagaaagctc 304
>gb|AC090655.63| Mus musculus strain C57BL/6J clone rp23-382i12 map 4, complete sequence Length = 264975 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gtgcattttctagacaagat 228 |||||||||||||||||||| Sbjct: 246623 gtgcattttctagacaagat 246642 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 gtgcattttctagacaagat 228 |||||||||||||||||||| Sbjct: 67487 gtgcattttctagacaagat 67468
>emb|AL772334.16| Mouse DNA sequence from clone RP23-411B7 on chromosome 4, complete sequence Length = 150841 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gtgcattttctagacaagat 228 |||||||||||||||||||| Sbjct: 67986 gtgcattttctagacaagat 68005
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tggaattatgtgcattttct 219 |||||||||||||||||||| Sbjct: 365596 tggaattatgtgcattttct 365615 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,286,730 Number of Sequences: 3902068 Number of extensions: 6286730 Number of successful extensions: 118036 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 117606 Number of HSP's gapped (non-prelim): 429 length of query: 640 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 617 effective length of database: 17,143,297,704 effective search space: 10577414683368 effective search space used: 10577414683368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)