ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TM6S2_HUMAN (Q9BZW4) Transmembrane 6 superfamily member 2 (Fragm... 30 7.6
2F263_RAT (O35552) 6-phosphofructo-2-kinase/fructose-2,6-biphosph... 30 7.6
3F263_HUMAN (Q16875) 6-phosphofructo-2-kinase/fructose-2,6-biphos... 30 7.6
4F261_RAT (P07953) 6-phosphofructo-2-kinase/fructose-2,6-biphosph... 30 7.6
5HIS8_DEHSC (Q3ZXL8) Histidinol-phosphate aminotransferase (EC 2.... 29 10.0

>TM6S2_HUMAN (Q9BZW4) Transmembrane 6 superfamily member 2 (Fragment)|
          Length = 350

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 195 MRDPAGVASVQLLLYRV*MTPFASLEAYNL 106
           +RDP     VQ+L+Y   + PF  L AY L
Sbjct: 257 LRDPVAYPKVQMLMYMFYVLPFCGLAAYAL 286



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>F263_RAT (O35552) 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3|
           (6PF-2-K/Fru-2,6-P2ASE brain-type isozyme) (RB2K)
           [Includes: 6-phosphofructo-2-kinase (EC 2.7.1.105);
           Fructose-2,6-bisphosphatase (EC 3.1.3.46)]
          Length = 555

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 168 PKQHQPDHASSSICLLASCGPHSSQFFWSAPTLAMM*GSSTQF-TYTYRVTQQQLNWLGF 344
           P  H+P        L  SCGP  +    ++PT+ +M G   +  TY  +   + LNW+G 
Sbjct: 16  PVDHRPS-------LPRSCGPKLT----NSPTVIVMVGLPARGKTYISKKLTRYLNWIGV 64

Query: 345 PTSTRFNM 368
           PT   FN+
Sbjct: 65  PTKV-FNV 71



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>F263_HUMAN (Q16875) 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3|
           (6PF-2-K/Fru-2,6-P2ASE brain/placenta-type isozyme)
           (iPFK-2) (NY-REN-56 antigen) [Includes:
           6-phosphofructo-2-kinase (EC 2.7.1.105);
           Fructose-2,6-bisphosphatase (EC 3.1.3.46)]
          Length = 520

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 168 PKQHQPDHASSSICLLASCGPHSSQFFWSAPTLAMM*GSSTQF-TYTYRVTQQQLNWLGF 344
           P  H+P        L  SCGP  +    ++PT+ +M G   +  TY  +   + LNW+G 
Sbjct: 16  PVDHRPS-------LPRSCGPKLT----NSPTVIVMVGLPARGKTYISKKLTRYLNWIGV 64

Query: 345 PTSTRFNM 368
           PT   FN+
Sbjct: 65  PTKV-FNV 71



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>F261_RAT (P07953) 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1|
           (6PF-2-K/Fru-2,6-P2ASE liver isozyme) [Includes:
           6-phosphofructo-2-kinase (EC 2.7.1.105);
           Fructose-2,6-bisphosphatase (EC 3.1.3.46)]
          Length = 470

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 189 HASSSICLLASCGPHSSQFFWSAPTLAMM*GSSTQF-TYTYRVTQQQLNWLGFPTSTRFN 365
           H+SSS  L    G    QF  ++PT+ +M G   +  TY      + LNW+G PT   FN
Sbjct: 19  HSSSSSVLQRRRGSSIPQFT-NSPTMVIMVGLPARGKTYISTKLTRYLNWIGTPTKV-FN 76

Query: 366 M 368
           +
Sbjct: 77  L 77



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>HIS8_DEHSC (Q3ZXL8) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 358

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 84  LYTQRALTGYRPPKRRTASFILCKAAAGPKQHQPDHASSSICLLASC 224
           LYT+ +  G+  P    A+FILCK   G K  +  H   S  +L  C
Sbjct: 281 LYTELSKFGWLKPYPSVANFILCKLLKG-KAKEVQHELESKGILVRC 326


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,601,940
Number of Sequences: 219361
Number of extensions: 2263892
Number of successful extensions: 4824
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4822
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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