ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags32p19 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 82.0 bits (201), Expect = 4e-16 Identities = 38/47 (80%), Positives = 41/47 (87%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGDYKEDVGVKLDRP 72 ATS I+PLQNV+ KVKIL PKFD+GKLMEVHGDY EDVGVKLDRP Sbjct: 199 ATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRP 245
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 81.6 bits (200), Expect = 5e-16 Identities = 38/52 (73%), Positives = 42/52 (80%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGDYKEDVGVKLDRPDVDXV 57 ATS I+PLQNV+ KVKIL PKFDLGKLMEVHGDY ED+G KLDRP + V Sbjct: 199 ATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDIGTKLDRPAEEAV 250
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 80.1 bits (196), Expect = 1e-15 Identities = 40/51 (78%), Positives = 42/51 (82%), Gaps = 1/51 (1%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGDY-KEDVGVKLDRPDVD 63 ATS IFPLQNV+ KVKIL PKFDLGKLMEVHGDY KED+G KLDRP D Sbjct: 199 ATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAED 249
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 75.1 bits (183), Expect = 5e-14 Identities = 37/54 (68%), Positives = 43/54 (79%), Gaps = 1/54 (1%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGDY-KEDVGVKLDRPDVDXVI 54 AT I+PLQNV+ KVKIL PKFDLGKLMEVHGDY EDVGVK+DRP + ++ Sbjct: 199 ATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMV 252
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 71.6 bits (174), Expect = 5e-13 Identities = 36/48 (75%), Positives = 39/48 (81%), Gaps = 1/48 (2%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGDY-KEDVGVKLDRP 72 AT I+PLQNV+ KVKIL PKFDL KLMEVHGDY EDVGVK+DRP Sbjct: 200 ATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRP 247
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 60.1 bits (144), Expect = 2e-09 Identities = 27/40 (67%), Positives = 32/40 (80%) Frame = -2 Query: 200 IFPLQNVYXXKVKILPPPKFDLGKLMEVHGDYKEDVGVKL 81 I+PLQ+ + KVKIL PKFDL KLMEVHGDY E+VG K+ Sbjct: 201 IYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 240
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 51.6 bits (122), Expect = 5e-07 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 9/57 (15%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGD---------YKEDVGVKLDRPD 69 A I+PL +VY KVK+L PKF+LGKLME+HG+ +D G K++R D Sbjct: 199 ACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVERAD 255
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 51.6 bits (122), Expect = 5e-07 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 9/57 (15%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGD---------YKEDVGVKLDRPD 69 A I+PL +VY KVK+L PKF+LGKLME+HG+ +D G K++R D Sbjct: 199 ACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERAD 255
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 51.2 bits (121), Expect = 7e-07 Identities = 26/44 (59%), Positives = 31/44 (70%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGDYKEDVGVKL 81 AT IFPLQNV KVKIL PK D KL+E+HG+ +DVG K+ Sbjct: 199 ATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 241
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 50.8 bits (120), Expect = 9e-07 Identities = 25/44 (56%), Positives = 33/44 (75%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGDYKEDVGVKL 81 AT+ I+PLQNV+ KVKIL PK D KL+E+HG+ +DVG K+ Sbjct: 199 ATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE-SQDVGSKV 241
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 50.8 bits (120), Expect = 9e-07 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 7/55 (12%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGD-------YKEDVGVKLDRPD 69 A I+PL +VY KVK+L PKF+LGKLME+HG+ ++ G K++R D Sbjct: 199 ACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVERAD 253
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 50.8 bits (120), Expect = 9e-07 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 7/55 (12%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGD-------YKEDVGVKLDRPD 69 A I+PL +VY KVK+L PKF+LGKLME+HG+ ++ G K++R D Sbjct: 199 ACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVERAD 253
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 50.8 bits (120), Expect = 9e-07 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 7/55 (12%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGD-------YKEDVGVKLDRPD 69 A I+PL +VY KVK+L PKF+LGKLME+HG+ ++ G K++R D Sbjct: 199 ACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVERAD 253
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 50.8 bits (120), Expect = 9e-07 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 7/55 (12%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGD-------YKEDVGVKLDRPD 69 A I+PL +VY KVK+L PKF+LGKLME+HG+ ++ G K++R D Sbjct: 199 ACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVERAD 253
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 50.8 bits (120), Expect = 9e-07 Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 10/58 (17%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGD----------YKEDVGVKLDRPD 69 A I+PL +VY KVK+L PKF+LGKLME+HG+ + D G K++R D Sbjct: 199 ACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERAD 256
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 49.7 bits (117), Expect = 2e-06 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 7/55 (12%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGDYK-------EDVGVKLDRPD 69 A I+PL +V+ KVK+L PKF+LGKLME+HG+ ++ G K++R D Sbjct: 199 ACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERAD 253
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 49.7 bits (117), Expect = 2e-06 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 7/55 (12%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGDYK-------EDVGVKLDRPD 69 A I+PL +V+ KVK+L PKF+LGKLME+HG+ ++ G K++R D Sbjct: 199 ACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERAD 253
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 49.7 bits (117), Expect = 2e-06 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 7/55 (12%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGDYK-------EDVGVKLDRPD 69 A I+PL +V+ KVK+L PKF+LGKLME+HG+ ++ G K++R D Sbjct: 199 ACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERAD 253
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 49.7 bits (117), Expect = 2e-06 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 7/55 (12%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGDYK-------EDVGVKLDRPD 69 A I+PL +V+ KVK+L PKF+LGKLME+HG+ ++ G K++R D Sbjct: 199 ACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERAD 253
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 49.7 bits (117), Expect = 2e-06 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 7/55 (12%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGDYK-------EDVGVKLDRPD 69 A I+PL +V+ KVK+L PKF+LGKLME+HG+ ++ G K++R D Sbjct: 196 ACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERAD 250
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 49.3 bits (116), Expect = 3e-06 Identities = 21/35 (60%), Positives = 27/35 (77%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGD 108 AT IFPLQN++ KVK+L PKFD+G LM +HG+ Sbjct: 199 ATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 49.3 bits (116), Expect = 3e-06 Identities = 21/35 (60%), Positives = 27/35 (77%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGD 108 AT IFPLQN++ KVK+L PKFD+G LM +HG+ Sbjct: 199 ATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 49.3 bits (116), Expect = 3e-06 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 7/55 (12%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGD-------YKEDVGVKLDRPD 69 A I+PL +V+ KVK+L PKF+LGKLME+HG+ ++ G K++R D Sbjct: 199 ACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERAD 253
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 49.3 bits (116), Expect = 3e-06 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 7/55 (12%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGD-------YKEDVGVKLDRPD 69 A I+PL +V+ KVK+L PKF+LGKLME+HG+ ++ G K++R D Sbjct: 199 ACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERAD 253
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 48.5 bits (114), Expect = 5e-06 Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 2/48 (4%) Frame = -2 Query: 206 SXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGD--YKEDVGVKLDRPD 69 S ++PLQ VY KVKI+ PK DLG+L ++HGD G K+DRPD Sbjct: 199 SKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGDSITVGADGEKVDRPD 246
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 48.1 bits (113), Expect = 6e-06 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGD-YKEDVGVKLDRPDVDXVI 54 +T IFPLQNV+ KVK+L PKFD G L+ +HG+ E+ G K+ D V+ Sbjct: 199 STQTIFPLQNVHIRKVKLLKQPKFDWGSLLALHGEGSTEEKGKKVSSGFKDVVL 252
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 46.6 bits (109), Expect = 2e-05 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 8/52 (15%) Frame = -2 Query: 200 IFPLQNVYXXKVKILPPPKFDLGKLMEVHGD--------YKEDVGVKLDRPD 69 I+PL +V KVK+L PKFD+GKLME+HG+ + G K+DR D Sbjct: 203 IYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDRVD 254
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 46.2 bits (108), Expect = 2e-05 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 8/52 (15%) Frame = -2 Query: 200 IFPLQNVYXXKVKILPPPKFDLGKLMEVHGD--------YKEDVGVKLDRPD 69 I+PL +VY KVK+L P+FD+ KL+E+HGD G +DRP+ Sbjct: 206 IYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPE 257
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/35 (54%), Positives = 25/35 (71%) Frame = -2 Query: 212 ATSXIFPLQNVYXXKVKILPPPKFDLGKLMEVHGD 108 A ++PL +VY KVK+L P+FDL LME+HGD Sbjct: 202 ACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGD 236
>FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3| Length = 622 Score = 27.7 bits (60), Expect = 8.5 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +2 Query: 59 PHLHQACQASHQHPPCSHRAPP 124 PH H +HQH +H+APP Sbjct: 420 PHQHIQHHPNHQHQTLTHQAPP 441 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,250,596 Number of Sequences: 219361 Number of extensions: 313717 Number of successful extensions: 877 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 831 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 874 length of database: 80,573,946 effective HSP length: 46 effective length of database: 70,483,340 effective search space used: 1691600160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
