ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33e24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CWC25_ASPFU (Q4X1D7) Pre-mRNA-splicing factor cwc25 30 3.5

>CWC25_ASPFU (Q4X1D7) Pre-mRNA-splicing factor cwc25|
          Length = 447

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 381 SGRDIPCYRDDQDRRHCHRKNRGQGYEHHRDEQLFLRRSYDAVRGSH 241
           S RD    R D+DR     K+R   Y+H    + +  RS    RG+H
Sbjct: 260 SERDRRADRGDEDRHSSRYKDRDDRYDHSTRRRSYADRSPSPRRGNH 306


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,067,117
Number of Sequences: 219361
Number of extensions: 1004912
Number of successful extensions: 2505
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2501
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top