ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33e23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X67960.1|HVGRP94HO H.vulgare mRNA for GRP94 homologue 367 9e-99
2gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic ... 56 4e-05
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 56 4e-05
4dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic D... 56 4e-05
5dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic D... 56 4e-05
6dbj|AK119605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 4e-05
7dbj|AK102478.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 4e-05
8dbj|AK062023.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 4e-05
9dbj|AB037681.1| Oryza sativa HSP90 mRNA for heat shock protein 9... 56 4e-05
10dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 44 0.16
11gb|CP000087.1| Rickettsia bellii RML369-C, complete genome 42 0.63
12gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cance... 42 0.63
13gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, comple... 42 0.63
14gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Par... 40 2.5
15gb|AC104820.4| Homo sapiens BAC clone RP11-739A13 from 2, comple... 40 2.5
16gb|AC002460.1|AC002460 Human BAC clone CTB-191D16, complete sequ... 40 2.5
17emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 i... 40 2.5
18ref|NM_100506.3| Arabidopsis thaliana unknown protein AT1G06240 ... 38 9.9
19gb|DQ443406.1| Bombyx mori ecto-nucleotidase mRNA, complete cds 38 9.9
20gb|AC145799.2| Xenopus tropicalis clone CH216-55B16, complete se... 38 9.9
21emb|Z68118.1|CER01E6 Caenorhabditis elegans Cosmid R01E6, comple... 38 9.9
22gb|BT000916.1| Arabidopsis thaliana clone C105222 unknown protei... 38 9.9
23gb|AY080637.1| Arabidopsis thaliana unknown protein (At1g06240) ... 38 9.9
24emb|AJ299717.1|MAR299717 Microtus arvalis smc4 gene for SMC4 pro... 38 9.9
25emb|AJ299713.1|MAR299713 Microtus arvalis partial mRNA for putat... 38 9.9
26gb|AC115620.3| Homo sapiens BAC clone RP11-305K4 from 4, complet... 38 9.9
27gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 gen... 38 9.9
28gb|AC112640.3| Homo sapiens 3 BAC RP11-817M15 (Roswell Park Canc... 38 9.9
29gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, c... 38 9.9
30gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, com... 38 9.9
31gb|AC158524.2| Mus musculus BAC clone RP23-377I1 from chromosome... 38 9.9
32gb|AC154231.2| Mus musculus BAC clone RP24-339I11 from chromosom... 38 9.9
33dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.9
34gb|AC007491.7| Homo sapiens chromosome 16 clone RP11-182C10, com... 38 9.9
35emb|BX814959.1|CNS0AEKS Arabidopsis thaliana Full-length cDNA Co... 38 9.9
36emb|BX816427.1|CNS0AEBP Arabidopsis thaliana Full-length cDNA Co... 38 9.9
37gb|AC151345.2| Xenopus tropicalis clone ISB-383E8, complete sequ... 38 9.9
38gb|AC149893.2| Xenopus tropicalis clone ISB-263C13, complete seq... 38 9.9
39gb|AC025290.3|F9P14 Sequence of BAC F9P14 from Arabidopsis thali... 38 9.9
40dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome 38 9.9
41dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.9
42emb|AM236222.1| Microtus arvalis mRNA for structural maintenance... 38 9.9
43gb|BC107944.1| Rattus norvegicus SMC4 structural maintenance of ... 38 9.9
44gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 9.9
45gb|AC134849.5| Mus musculus BAC clone RP24-207G4 from 9, complet... 38 9.9
46emb|CT010451.9| Mouse DNA sequence from clone RP23-103I7 on chro... 38 9.9
47emb|CR956418.10| Pig DNA sequence from clone PigE-219P24 on chro... 38 9.9
48emb|AL731697.16| Mouse DNA sequence from clone RP23-188L7 on chr... 38 9.9 
>emb|X67960.1|HVGRP94HO H.vulgare mRNA for GRP94 homologue
          Length = 2682

 Score =  367 bits (185), Expect = 9e-99
 Identities = 196/199 (98%), Gaps = 1/199 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    actaggnacagtagtacattacacggtacaaaaccccccgtatcacgatcgatgattaat 60
            |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2637 actaggtacagtagtacattacacgg-acaaaaccccccgtatcacgatcgatgattaat 2579

                                                                        
Query: 61   cgtcttccgcgcggtaaaaatggacgtccctcaaaaccatcacatttccagtccaacatt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2578 cgtcttccgcgcggtaaaaatggacgtccctcaaaaccatcacatttccagtccaacatt 2519

                                                                        
Query: 121  tctttctaatgaaatgaaagctaaatgggcgatatgagcaactacagctcgtccttgncg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2518 tctttctaatgaaatgaaagctaaatgggcgatatgagcaactacagctcgtccttgtcg 2459

                               
Query: 181  tactgctcgtgttccggct 199
            |||||||||||||||||||
Sbjct: 2458 tactgctcgtgttccggct 2440
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>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete
            sequence
          Length = 143507

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                            
Query: 76   aaaaatggacgtccctcaaaaccatcacattt 107
            ||||||||||||||||| ||||||||||||||
Sbjct: 9409 aaaaatggacgtccctcgaaaccatcacattt 9440
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                                
Query: 76       aaaaatggacgtccctcaaaaccatcacattt 107
                ||||||||||||||||| ||||||||||||||
Sbjct: 29928703 aaaaatggacgtccctcgaaaccatcacattt 29928734



 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 118     atttctttctaatgaaatg 136
               |||||||||||||||||||
Sbjct: 3132284 atttctttctaatgaaatg 3132302
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>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0541C02
          Length = 150660

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                            
Query: 76   aaaaatggacgtccctcaaaaccatcacattt 107
            ||||||||||||||||| ||||||||||||||
Sbjct: 4851 aaaaatggacgtccctcgaaaccatcacattt 4882
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>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0481E08
          Length = 171965

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                              
Query: 76     aaaaatggacgtccctcaaaaccatcacattt 107
              ||||||||||||||||| ||||||||||||||
Sbjct: 124216 aaaaatggacgtccctcgaaaccatcacattt 124247
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>dbj|AK119605.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-F01, full
            insert sequence
          Length = 1944

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 76   aaaaatggacgtccctcaaaaccatcacattt 107
            ||||||||||||||||| ||||||||||||||
Sbjct: 1848 aaaaatggacgtccctcgaaaccatcacattt 1817
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>dbj|AK102478.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094I10, full
            insert sequence
          Length = 2708

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 76   aaaaatggacgtccctcaaaaccatcacattt 107
            ||||||||||||||||| ||||||||||||||
Sbjct: 2608 aaaaatggacgtccctcgaaaccatcacattt 2577
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>dbj|AK062023.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-G02, full
            insert sequence
          Length = 2026

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 76   aaaaatggacgtccctcaaaaccatcacattt 107
            ||||||||||||||||| ||||||||||||||
Sbjct: 1930 aaaaatggacgtccctcgaaaccatcacattt 1899
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>dbj|AB037681.1| Oryza sativa HSP90 mRNA for heat shock protein 90, complete cds
          Length = 2731

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 76   aaaaatggacgtccctcaaaaccatcacattt 107
            ||||||||||||||||| ||||||||||||||
Sbjct: 2602 aaaaatggacgtccctcgaaaccatcacattt 2571
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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 118     atttctttctaatgaaatgaaa 139
               ||||||||||||||||||||||
Sbjct: 1261169 atttctttctaatgaaatgaaa 1261148
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>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 126     ctaatgaaatgaaagctaaat 146
               |||||||||||||||||||||
Sbjct: 1421262 ctaatgaaatgaaagctaaat 1421242
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>gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 222553

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 124    ttctaatgaaatgaaagctaa 144
              |||||||||||||||||||||
Sbjct: 112594 ttctaatgaaatgaaagctaa 112614
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>gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, complete sequence
          Length = 183177

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 95     aaccatcacatttccagtcca 115
              |||||||||||||||||||||
Sbjct: 132650 aaccatcacatttccagtcca 132630
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>gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 171236

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   aatgaaatgaaagctaaatg 147
             ||||||||||||||||||||
Sbjct: 60679 aatgaaatgaaagctaaatg 60698
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>gb|AC104820.4| Homo sapiens BAC clone RP11-739A13 from 2, complete sequence
          Length = 161786

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 126   ctaatgaaatgaaagctaaatggg 149
             ||||||||| ||||||||||||||
Sbjct: 22238 ctaatgaaaagaaagctaaatggg 22261
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>gb|AC002460.1|AC002460 Human BAC clone CTB-191D16, complete sequence
          Length = 174952

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   ctaatgaaatgaaagctaaa 145
             ||||||||||||||||||||
Sbjct: 56061 ctaatgaaatgaaagctaaa 56080
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>emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 in linkage group 4,
             complete sequence
          Length = 99176

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   catttccagtccaacatttc 122
             ||||||||||||||||||||
Sbjct: 21017 catttccagtccaacatttc 21036
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>ref|NM_100506.3| Arabidopsis thaliana unknown protein AT1G06240 mRNA, complete cds
          Length = 1501

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 136 gaaagctaaatgggcgatatgag 158
           |||||||||||||| ||||||||
Sbjct: 362 gaaagctaaatgggagatatgag 340
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>gb|DQ443406.1| Bombyx mori ecto-nucleotidase mRNA, complete cds
          Length = 2257

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 116 acatttctttctaatgaaa 134
           |||||||||||||||||||
Sbjct: 868 acatttctttctaatgaaa 886
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>gb|AC145799.2| Xenopus tropicalis clone CH216-55B16, complete sequence
          Length = 163674

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 124  ttctaatgaaatgaaagctaaat 146
            ||||||||||||||||| |||||
Sbjct: 9933 ttctaatgaaatgaaagataaat 9911
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>emb|Z68118.1|CER01E6 Caenorhabditis elegans Cosmid R01E6, complete sequence
          Length = 40937

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 128   aatgaaatgaaagctaaat 146
             |||||||||||||||||||
Sbjct: 38473 aatgaaatgaaagctaaat 38455
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>gb|BT000916.1| Arabidopsis thaliana clone C105222 unknown protein (At1g06240)
           mRNA, complete cds
          Length = 1183

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 136 gaaagctaaatgggcgatatgag 158
           |||||||||||||| ||||||||
Sbjct: 318 gaaagctaaatgggagatatgag 296
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>gb|AY080637.1| Arabidopsis thaliana unknown protein (At1g06240) mRNA, partial cds
          Length = 1341

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 136 gaaagctaaatgggcgatatgag 158
           |||||||||||||| ||||||||
Sbjct: 308 gaaagctaaatgggagatatgag 286
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>emb|AJ299717.1|MAR299717 Microtus arvalis smc4 gene for SMC4 protein, exons 1-19
          Length = 23225

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 122  ctttctaatgaaatgaaagctaa 144
            ||||| |||||||||||||||||
Sbjct: 3458 ctttcaaatgaaatgaaagctaa 3480
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>emb|AJ299713.1|MAR299713 Microtus arvalis partial mRNA for putative SMC4 protein (smc4 gene)
          Length = 3968

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 122 ctttctaatgaaatgaaagctaa 144
           ||||| |||||||||||||||||
Sbjct: 937 ctttcaaatgaaatgaaagctaa 959
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>gb|AC115620.3| Homo sapiens BAC clone RP11-305K4 from 4, complete sequence
          Length = 129984

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 102  acatttccagtccaacatttctt 124
            |||||||||||| ||||||||||
Sbjct: 2996 acatttccagtcaaacatttctt 2974
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>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete
             sequence
          Length = 135510

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 119   tttctttctaatgaaatga 137
             |||||||||||||||||||
Sbjct: 65947 tttctttctaatgaaatga 65965
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>gb|AC112640.3| Homo sapiens 3 BAC RP11-817M15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 211335

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 112   tccaacatttctttctaat 130
             |||||||||||||||||||
Sbjct: 69201 tccaacatttctttctaat 69183
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>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence
          Length = 175840

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 105   tttccagtccaacatttctttct 127
             |||||| ||||||||||||||||
Sbjct: 64679 tttccaatccaacatttctttct 64657
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>gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, complete sequence
          Length = 175579

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 105    tttccagtccaacatttctttct 127
              |||||| ||||||||||||||||
Sbjct: 151811 tttccaatccaacatttctttct 151789
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>gb|AC158524.2| Mus musculus BAC clone RP23-377I1 from chromosome 13, complete
            sequence
          Length = 191904

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 119  tttctttctaatgaaatga 137
            |||||||||||||||||||
Sbjct: 3495 tttctttctaatgaaatga 3477
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>gb|AC154231.2| Mus musculus BAC clone RP24-339I11 from chromosome 13, complete sequence
          Length = 141075

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 119    tttctttctaatgaaatga 137
              |||||||||||||||||||
Sbjct: 138007 tttctttctaatgaaatga 137989
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 119      tttctttctaatgaaatga 137
                |||||||||||||||||||
Sbjct: 21268412 tttctttctaatgaaatga 21268394
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>gb|AC007491.7| Homo sapiens chromosome 16 clone RP11-182C10, complete sequence
          Length = 180888

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 112   tccaacatttctttctaat 130
             |||||||||||||||||||
Sbjct: 66091 tccaacatttctttctaat 66073
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>emb|BX814959.1|CNS0AEKS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS20ZD08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2597

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 136 gaaagctaaatgggcgatatgag 158
           |||||||||||||| ||||||||
Sbjct: 331 gaaagctaaatgggagatatgag 309
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>emb|BX816427.1|CNS0AEBP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH47ZG02 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1464

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 136 gaaagctaaatgggcgatatgag 158
           |||||||||||||| ||||||||
Sbjct: 362 gaaagctaaatgggagatatgag 340
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>gb|AC151345.2| Xenopus tropicalis clone ISB-383E8, complete sequence
          Length = 85312

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 128   aatgaaatgaaagctaaat 146
             |||||||||||||||||||
Sbjct: 74313 aatgaaatgaaagctaaat 74331
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>gb|AC149893.2| Xenopus tropicalis clone ISB-263C13, complete sequence
          Length = 80397

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 128   aatgaaatgaaagctaaat 146
             |||||||||||||||||||
Sbjct: 62801 aatgaaatgaaagctaaat 62783
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>gb|AC025290.3|F9P14 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 48872

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 136   gaaagctaaatgggcgatatgag 158
             |||||||||||||| ||||||||
Sbjct: 36514 gaaagctaaatgggagatatgag 36492
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>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome
          Length = 1358633

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 114     caacatttctttctaatgaaatg 136
               |||||||| ||||||||||||||
Sbjct: 1128376 caacatttgtttctaatgaaatg 1128398
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>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
             clone:P0681F10
          Length = 170371

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 118   atttctttctaatgaaatg 136
             |||||||||||||||||||
Sbjct: 86469 atttctttctaatgaaatg 86487
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>emb|AM236222.1| Microtus arvalis mRNA for structural maintenance of chromosome 4
            protein (smc4 gene)
          Length = 4218

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 122  ctttctaatgaaatgaaagctaa 144
            ||||| |||||||||||||||||
Sbjct: 1187 ctttcaaatgaaatgaaagctaa 1209
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>gb|BC107944.1| Rattus norvegicus SMC4 structural maintenance of chromosomes 4-like 1
            (yeast), mRNA (cDNA clone IMAGE:7388735), complete cds
          Length = 1545

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 122  ctttctaatgaaatgaaagctaa 144
            ||||| |||||||||||||||||
Sbjct: 1159 ctttccaatgaaatgaaagctaa 1181
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 119      tttctttctaatgaaatga 137
                |||||||||||||||||||
Sbjct: 21279676 tttctttctaatgaaatga 21279658
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>gb|AC134849.5| Mus musculus BAC clone RP24-207G4 from 9, complete sequence
          Length = 151630

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 94    aaaccatcacatttccagt 112
             |||||||||||||||||||
Sbjct: 98181 aaaccatcacatttccagt 98163
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>emb|CT010451.9| Mouse DNA sequence from clone RP23-103I7 on chromosome 9, complete
             sequence
          Length = 214871

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 94    aaaccatcacatttccagt 112
             |||||||||||||||||||
Sbjct: 59074 aaaccatcacatttccagt 59092
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>emb|CR956418.10| Pig DNA sequence from clone PigE-219P24 on chromosome 6, complete
             sequence
          Length = 173652

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 115   aacatttctttctaatgaa 133
             |||||||||||||||||||
Sbjct: 19584 aacatttctttctaatgaa 19566
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>emb|AL731697.16| Mouse DNA sequence from clone RP23-188L7 on chromosome X, complete
              sequence
          Length = 200250

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 120    ttctttctaatgaaatgaa 138
              |||||||||||||||||||
Sbjct: 105805 ttctttctaatgaaatgaa 105823


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,414,324
Number of Sequences: 3902068
Number of extensions: 1414324
Number of successful extensions: 103040
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102775
Number of HSP's gapped (non-prelim): 264
length of query: 199
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 177
effective length of database: 17,147,199,772
effective search space: 3035054359644
effective search space used: 3035054359644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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