Clone Information

BLAST Search Result

Clone Name	rbags33e20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MYH10_MOUSE (Q61879) Myosin-10 (Myosin heavy chain, nonmuscle II...	35	0.17
2	MYH10_BOVIN (Q27991) Myosin-10 (Myosin heavy chain, nonmuscle II...	35	0.17
3	TPM1_RAT (P04692) Tropomyosin 1 alpha chain (Alpha-tropomyosin)	35	0.28
4	TPM1_RABIT (P58772) Tropomyosin 1 alpha chain (Alpha-tropomyosin)	35	0.28
5	TPM1_MOUSE (P58771) Tropomyosin 1 alpha chain (Alpha-tropomyosin)	35	0.28
6	TPM1_HUMAN (P09493) Tropomyosin 1 alpha chain (Alpha-tropomyosin)	35	0.28
7	MYH10_RAT (Q9JLT0) Myosin-10 (Myosin heavy chain, nonmuscle IIb)...	35	0.28
8	TPM1_PIG (P42639) Tropomyosin 1 alpha chain (Alpha-tropomyosin)	34	0.48
9	TPM1_COTJA (P58773) Tropomyosin 1 alpha chain (Alpha-tropomyosin)	33	0.83
10	TPM1_CHICK (P04268) Tropomyosin 1 alpha chain (Alpha-tropomyosin)	33	0.83
11	TPM3_MOUSE (P21107) Tropomyosin alpha-3 chain (Tropomyosin-3) (T...	33	1.1
12	GLDA_CITFR (P45511) Glycerol dehydrogenase (EC 1.1.1.6) (GLDH)	33	1.1
13	TPM3_HUMAN (P06753) Tropomyosin alpha-3 chain (Tropomyosin-3) (T...	32	1.4
14	TPM1_XENLA (Q01173) Tropomyosin 1 alpha chain (Alpha-tropomyosin)	32	1.4
15	TPM1_RANTE (P13105) Tropomyosin 1 alpha chain (Alpha-tropomyosin)	32	1.4
16	TPM1_BRARE (P13104) Tropomyosin 1 alpha chain (Alpha-tropomyosin)	32	1.4
17	Y671_CHLMU (Q9PK02) Hypothetical protein TC0671	32	1.4
18	TPR_HUMAN (P12270) Nucleoprotein TPR	32	1.8
19	ENGA_LEPIN (Q8F6K1) GTP-binding protein engA	32	2.4
20	ENGA_LEPIC (Q72PQ1) GTP-binding protein engA	32	2.4
21	RECA_LEPBI (P48290) Protein recA (Recombinase A)	31	3.1
22	MYH10_HUMAN (P35580) Myosin-10 (Myosin heavy chain, nonmuscle II...	31	3.1
23	EF2_METMA (Q8PUR7) Elongation factor 2 (EF-2)	31	4.1
24	MCPC_BACSU (P54576) Methyl-accepting chemotaxis protein mcpC	31	4.1
25	THSB_AERPE (Q9YA66) Thermosome subunit beta (Thermosome subunit ...	30	5.4
26	NARH_BACSU (P42176) Nitrate reductase beta chain (EC 1.7.99.4)	30	5.4
27	SYG1_YEAST (P40528) Protein SYG1	30	5.4
28	UIDB_ECOLI (P30868) Glucuronide carrier protein (Glucuronide per...	30	7.0
29	MRE11_THEAC (Q9HLR7) DNA double-strand break repair protein mre11	30	7.0
30	GATA6_CHICK (P43693) Transcription factor GATA-6 (GATA-binding f...	30	9.1
31	RL29_MYCGA (O52340) 50S ribosomal protein L29	30	9.1
32	TPM_SCHJA (Q26519) Tropomyosin	30	9.1
33	PRS6A_LYCES (P54776) 26S protease regulatory subunit 6A homolog ...	30	9.1
34	B3A4_RAT (Q8K4V2) Anion exchange protein 4 (Anion exchanger 4) (...	30	9.1

>MYH10_MOUSE (Q61879) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle|
            myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB)
            (Cellular myosin heavy chain, type B) (Nonmuscle myosin
            heavy chain-B) (NMMHC-B)
          Length = 1976

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
 Frame = -1

Query: 696  MDEQVEVSKQIRNEVVDVK----TDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAG 529
            + EQ+E +K+ +  +   K    TD  ++  +V+ +QQ+ A  E K + LD +    +A 
Sbjct: 1208 LSEQLEQAKRFKANLEKNKQGLETDNKELACEVKVLQQVKAESEHKRKKLDAQVQELHAK 1267

Query: 528  IWYLCRMAGGIKEGINAKFFQEADEKLKLLDLAQTEKKPVK------GLELFLESTKEVK 367
            +    R+   + E  N K   E D    LL+  + EKK +K      GLE  L+ T+E+ 
Sbjct: 1268 VSEGDRLRVELAEKAN-KLQNELDNVSTLLE--EAEKKGIKFAKDAAGLESQLQDTQELL 1324

Query: 366  ALDSKPK 346
              +++ K
Sbjct: 1325 QEETRQK 1331

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>MYH10_BOVIN (Q27991) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle|
            myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB)
            (Cellular myosin heavy chain, type B) (Nonmuscle myosin
            heavy chain-B) (NMMHC-B)
          Length = 1976

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
 Frame = -1

Query: 696  MDEQVEVSKQIRNEVVDVK----TDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAG 529
            + EQ+E +K+ +  +   K    TD  ++  +V+ +QQ+ A  E K + LD +    +A 
Sbjct: 1208 LSEQLEQAKRFKANLEKNKQGLETDNKELACEVKVLQQVKAESEHKRKKLDAQVQELHAK 1267

Query: 528  IWYLCRMAGGIKEGINAKFFQEADEKLKLLDLAQTEKKPVK------GLELFLESTKEVK 367
            +    R+   + E  N K   E D    LL+  + EKK +K      GLE  L+ T+E+ 
Sbjct: 1268 VSEGDRLRVELAEKAN-KLQNELDNVSTLLE--EAEKKGIKFAKDAAGLESQLQDTQELL 1324

Query: 366  ALDSKPK 346
              +++ K
Sbjct: 1325 QEETRQK 1331

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>TPM1_RAT (P04692) Tropomyosin 1 alpha chain (Alpha-tropomyosin)|
          Length = 284

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
 Frame = -1

Query: 675 SKQIRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRMAGGI 496
           SKQ+ +E+V ++  L     +++   + +   +EK+EL + K   A A +  L R    +
Sbjct: 36  SKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLV 95

Query: 495 KEGIN------AKFFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEVKALDSKPKTIVQ 334
           +E ++      A   Q+ +E  K  D ++   K ++      E   E++ +  K    + 
Sbjct: 96  EEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIA 155

Query: 333 NDAKK 319
            DA +
Sbjct: 156 EDADR 160

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>TPM1_RABIT (P58772) Tropomyosin 1 alpha chain (Alpha-tropomyosin)|
          Length = 284

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
 Frame = -1

Query: 675 SKQIRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRMAGGI 496
           SKQ+ +E+V ++  L     +++   + +   +EK+EL + K   A A +  L R    +
Sbjct: 36  SKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLV 95

Query: 495 KEGIN------AKFFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEVKALDSKPKTIVQ 334
           +E ++      A   Q+ +E  K  D ++   K ++      E   E++ +  K    + 
Sbjct: 96  EEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIA 155

Query: 333 NDAKK 319
            DA +
Sbjct: 156 EDADR 160

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>TPM1_MOUSE (P58771) Tropomyosin 1 alpha chain (Alpha-tropomyosin)|
          Length = 284

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
 Frame = -1

Query: 675 SKQIRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRMAGGI 496
           SKQ+ +E+V ++  L     +++   + +   +EK+EL + K   A A +  L R    +
Sbjct: 36  SKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLV 95

Query: 495 KEGIN------AKFFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEVKALDSKPKTIVQ 334
           +E ++      A   Q+ +E  K  D ++   K ++      E   E++ +  K    + 
Sbjct: 96  EEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIA 155

Query: 333 NDAKK 319
            DA +
Sbjct: 156 EDADR 160

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>TPM1_HUMAN (P09493) Tropomyosin 1 alpha chain (Alpha-tropomyosin)|
          Length = 284

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
 Frame = -1

Query: 675 SKQIRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRMAGGI 496
           SKQ+ +E+V ++  L     +++   + +   +EK+EL + K   A A +  L R    +
Sbjct: 36  SKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLV 95

Query: 495 KEGIN------AKFFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEVKALDSKPKTIVQ 334
           +E ++      A   Q+ +E  K  D ++   K ++      E   E++ +  K    + 
Sbjct: 96  EEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIA 155

Query: 333 NDAKK 319
            DA +
Sbjct: 156 EDADR 160

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>MYH10_RAT (Q9JLT0) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle|
            myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB)
            (Cellular myosin heavy chain, type B) (Nonmuscle myosin
            heavy chain-B) (NMMHC-B)
          Length = 1976

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
 Frame = -1

Query: 696  MDEQVEVSKQIRNEVVDVK----TDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAG 529
            + EQ+E +K+ +  +   K    TD  ++  +V+ +QQ+ A  E K + LD +    +A 
Sbjct: 1208 LSEQLEQAKRFKANLEKNKQGLETDNKELACEVKVLQQVKAESEHKRKKLDAQVQELHAK 1267

Query: 528  IWYLCRMAGGIKEGINAKFFQEADEKLKLLDLAQTEKKPVK------GLELFLESTKEVK 367
            +    R+   + E  N K   E D    LL+  + EKK +K      GLE  L+ T+E+ 
Sbjct: 1268 VSEGDRLRVELAEKAN-KLQNELDNVSTLLE--EAEKKGMKFAKDAAGLESQLQDTQELL 1324

Query: 366  ALDSKPK 346
              +++ K
Sbjct: 1325 QEETRQK 1331

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>TPM1_PIG (P42639) Tropomyosin 1 alpha chain (Alpha-tropomyosin)|
          Length = 284

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
 Frame = -1

Query: 675 SKQIRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRMAGGI 496
           SKQ+ +E+V ++  L     +++   + +   +EK+EL + K   A A +  L R     
Sbjct: 36  SKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLF 95

Query: 495 KEGIN------AKFFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEVKALDSKPKTIVQ 334
           +E ++      A   Q+ +E  K  D ++   K ++      E   E++ +  K    + 
Sbjct: 96  EEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIA 155

Query: 333 NDAKK 319
            DA +
Sbjct: 156 EDADR 160

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>TPM1_COTJA (P58773) Tropomyosin 1 alpha chain (Alpha-tropomyosin)|
          Length = 284

 Score = 33.1 bits (74), Expect = 0.83
 Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
 Frame = -1

Query: 681 EVSKQIRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRMAG 502
           E SKQ+ +E+V ++  L     +++   + +   +EK+EL D K   A + +  L R   
Sbjct: 34  ERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKATDAESEVASLNRRIQ 93

Query: 501 GIKEGIN------AKFFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEVKALDSKPKTI 340
            ++E ++      A   Q+ +E  K  D ++   K ++      E   E++ +  K    
Sbjct: 94  LVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAQKDEEKMEIQEIQLKEAKH 153

Query: 339 VQNDAKK 319
           +  +A +
Sbjct: 154 IAEEADR 160

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>TPM1_CHICK (P04268) Tropomyosin 1 alpha chain (Alpha-tropomyosin)|
          Length = 284

 Score = 33.1 bits (74), Expect = 0.83
 Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
 Frame = -1

Query: 681 EVSKQIRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRMAG 502
           E SKQ+ +E+V ++  L     +++   + +   +EK+EL D K   A + +  L R   
Sbjct: 34  ERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKATDAESEVASLNRRIQ 93

Query: 501 GIKEGIN------AKFFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEVKALDSKPKTI 340
            ++E ++      A   Q+ +E  K  D ++   K ++      E   E++ +  K    
Sbjct: 94  LVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAQKDEEKMEIQEIQLKEAKH 153

Query: 339 VQNDAKK 319
           +  +A +
Sbjct: 154 IAEEADR 160

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>TPM3_MOUSE (P21107) Tropomyosin alpha-3 chain (Tropomyosin-3) (Tropomyosin|
           gamma)
          Length = 284

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
 Frame = -1

Query: 681 EVSKQIRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRMAG 502
           E SKQ+ +E+  ++  L     +++   + +   +EK+EL + K   A A +  L R   
Sbjct: 34  ERSKQLEDELATMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQ 93

Query: 501 GIKEGIN------AKFFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEVKALDSKPKTI 340
            ++E ++      A   Q+ +E  K  D ++   K ++   L  E   E++ +  K    
Sbjct: 94  LVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKH 153

Query: 339 VQNDAKK 319
           +  +A +
Sbjct: 154 IAEEADR 160

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>GLDA_CITFR (P45511) Glycerol dehydrogenase (EC 1.1.1.6) (GLDH)|
          Length = 365

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +1

Query: 334 LHDGLRLGVECLYLLGALQKQFETLHRLLFSLSQVQELEFFIRFLEKLGI 483
           +H+G  +  EC +L    +  F TL +L+   S ++E+E  + F +K+G+
Sbjct: 256 IHNGFTILEECHHLYHGEKVAFGTLAQLVLQNSPMEEIETVLNFCQKVGL 305

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>TPM3_HUMAN (P06753) Tropomyosin alpha-3 chain (Tropomyosin-3) (Tropomyosin|
           gamma) (hTM5)
          Length = 284

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
 Frame = -1

Query: 681 EVSKQIRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRMAG 502
           E SKQ+ +E+  ++  L     +++   + +   +EK+EL + K   A A +  L R   
Sbjct: 34  ERSKQLEDELAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQ 93

Query: 501 GIKEGIN------AKFFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEVKALDSKPKTI 340
            ++E ++      A   Q+ +E  K  D ++   K ++   L  E   E++ +  K    
Sbjct: 94  LVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKH 153

Query: 339 VQNDAKK 319
           +  +A +
Sbjct: 154 IAEEADR 160

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>TPM1_XENLA (Q01173) Tropomyosin 1 alpha chain (Alpha-tropomyosin)|
          Length = 284

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
 Frame = -1

Query: 675 SKQIRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRMAGGI 496
           SKQ+ +E+V ++  L     +++   + +   +EK+EL D K   A   +  L R    +
Sbjct: 36  SKQLEDELVALQKKLKGTEDELDKYSEALKDAQEKLELSDKKATDAEGDVASLNRRIQLV 95

Query: 495 KEGIN------AKFFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEVKALDSKPKTIVQ 334
           +E ++      +   Q+ +E  K  D ++   K ++   L  E   E++ +  K    + 
Sbjct: 96  EEELDRAQERLSTALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIA 155

Query: 333 NDAKK 319
            +A +
Sbjct: 156 EEADR 160

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>TPM1_RANTE (P13105) Tropomyosin 1 alpha chain (Alpha-tropomyosin)|
          Length = 284

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
 Frame = -1

Query: 675 SKQIRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRMAGGI 496
           SKQ+ +E+V ++  +     +++   + +   +EK+EL + K   A A +  L R    +
Sbjct: 36  SKQLEDELVAMQKKMKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLV 95

Query: 495 KEGIN------AKFFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEVKALDSKPKTIVQ 334
           +E ++      A   Q+ +E  K  D ++   K ++   L  E   E++ +  K    + 
Sbjct: 96  EEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKIELQEIQLKEAKHIA 155

Query: 333 NDAKK 319
            +A +
Sbjct: 156 EEADR 160

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>TPM1_BRARE (P13104) Tropomyosin 1 alpha chain (Alpha-tropomyosin)|
          Length = 284

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 26/127 (20%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
 Frame = -1

Query: 681 EVSKQIRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRMAG 502
           E SKQ+ +++V ++  L     +++   + +   +EK+EL + K   A   +  L R   
Sbjct: 34  ERSKQLEDDLVALQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEGDVASLNRRIQ 93

Query: 501 GIKEGIN------AKFFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEVKALDSKPKTI 340
            ++E ++      A   Q+ +E  K  D ++   K ++   L  E   E++ +  K    
Sbjct: 94  LVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKH 153

Query: 339 VQNDAKK 319
           +  +A +
Sbjct: 154 IAEEADR 160

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>Y671_CHLMU (Q9PK02) Hypothetical protein TC0671|
          Length = 379

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 16/56 (28%), Positives = 33/56 (58%)
 Frame = -1

Query: 687 QVEVSKQIRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWY 520
           ++EV+  +   V + + ++ Q+  D+EAI Q +   EE++E L+ K  ++  G+ Y
Sbjct: 77  EIEVADMVAEVVENNEANVQQLDEDLEAIFQAIDAGEEQLESLEVKNKSSLKGVRY 132

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>TPR_HUMAN (P12270) Nucleoprotein TPR|
          Length = 2349

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 30/126 (23%), Positives = 53/126 (42%)
 Frame = -1

Query: 696  MDEQVEVSKQIRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYL 517
            +D+ V   +Q   +V D+K  L     +VE  Q MV  LEE +       +     I   
Sbjct: 934  VDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLEESLNKEKQVTEEVRKNIEVR 993

Query: 516  CRMAGGIKEGINAKFFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEVKALDSKPKTIV 337
             + +   +  +  K  +   EK +L D    +++ ++ +E  L   K  K L S     V
Sbjct: 994  LKESAEFQTQLEKKLMEVEKEKQELQD---DKRRAIESMEQQLSELK--KTLSS-----V 1043

Query: 336  QNDAKK 319
            QN+ ++
Sbjct: 1044 QNEVQE 1049

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>ENGA_LEPIN (Q8F6K1) GTP-binding protein engA|
          Length = 489

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = -1

Query: 510 MAGGIKEGINAKFFQEADEKLKLLDLAQTEK--KPVKGLELFLESTKEVKALDSKPKTIV 337
           +AG  ++ I+    +  D +L L D A   K  K  + LE F    + +KA++S    I 
Sbjct: 257 VAGTTRDSIDT-LLEFGDRRLLLTDTAGIRKQSKTAEALE-FYSYQRTIKAIESSDLVIH 314

Query: 336 QNDAKKPTKTFDVPIKSAAVHRSNRFLI 253
             DAKK    FD  I S    +   FL+
Sbjct: 315 LLDAKKGFGDFDKKITSLLQEKGKPFLL 342

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>ENGA_LEPIC (Q72PQ1) GTP-binding protein engA|
          Length = 489

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = -1

Query: 510 MAGGIKEGINAKFFQEADEKLKLLDLAQTEK--KPVKGLELFLESTKEVKALDSKPKTIV 337
           +AG  ++ I+    +  D +L L D A   K  K  + LE F    + +KA++S    I 
Sbjct: 257 VAGTTRDSIDT-LLEFGDRRLLLTDTAGIRKQSKTAEALE-FYSYQRTIKAIESSDLVIH 314

Query: 336 QNDAKKPTKTFDVPIKSAAVHRSNRFLI 253
             DAKK    FD  I S    +   FL+
Sbjct: 315 LLDAKKGFGDFDKKITSLLQEKGKPFLL 342

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>RECA_LEPBI (P48290) Protein recA (Recombinase A)|
          Length = 387

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
 Frame = -1

Query: 693 DEQVEVSKQIRNEVVDVKT--DLSQIGFDVEAIQQMVAGLEEKIELLD---NKQDAANAG 529
           +++  V  ++R +VV  K      Q  FD+        G+  +  L+D        A AG
Sbjct: 245 EKEEPVGNRVRVKVVKNKCAPPFRQAEFDI----MYANGINRESSLIDLAVRHDLVAKAG 300

Query: 528 IWYLC--RMAGGIKEGINAKFFQEADEKLKLLDLAQTEKKPVKGLELFLES---TKEVKA 364
            WY       G  KE +   F +  D   K+    + + + +  L L  +S   T+EVK+
Sbjct: 301 SWYSYGGEKIGQGKEQVKNFFLENPDIAFKI----ENQVRDLNSLPLMDQSKIQTREVKS 356

Query: 363 LDSKPKTIVQNDAKKP 316
           ++  PK   +  +K+P
Sbjct: 357 IERDPKETKETKSKQP 372

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>MYH10_HUMAN (P35580) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle|
            myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB)
            (Cellular myosin heavy chain, type B) (Nonmuscle myosin
            heavy chain-B) (NMMHC-B)
          Length = 1976

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
 Frame = -1

Query: 696  MDEQVEVSKQIRNEVVDVK----TDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAG 529
            + EQ+E +K+ +  +   K    TD  ++  +V+ +QQ+ A  E K + LD +    +A 
Sbjct: 1208 LSEQLEQAKRFKANLEKNKQGLETDNKELACEVKVLQQVKAESEHKRKKLDAQVQELHAK 1267

Query: 528  IWYLCRMAGGIKEGINAKFFQEADEKLKLLDLAQTEKKPVK------GLELFLESTKEVK 367
            +    R+   + E   +K   E D    LL+  + EKK +K       LE  L+ T+E+ 
Sbjct: 1268 VSEGDRLRVELAEKA-SKLQNELDNVSTLLE--EAEKKGIKFAKDAASLESQLQDTQELL 1324

Query: 366  ALDSKPK 346
              +++ K
Sbjct: 1325 QEETRQK 1331

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>EF2_METMA (Q8PUR7) Elongation factor 2 (EF-2)|
          Length = 730

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -1

Query: 390 LESTKEVKALDSKPKTIVQNDAKKPTKTFDVPIKSAAVHRSNRFLIRKEGLVL*LMPA 217
           +E  K V+   SKP  + +   KK T+    PI+  + +R NRF I  E L L ++ A
Sbjct: 449 IERDKNVEITTSKPIVVYRETIKKKTE----PIEGKSPNRHNRFYISVEPLDLEIVSA 502

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>MCPC_BACSU (P54576) Methyl-accepting chemotaxis protein mcpC|
          Length = 654

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
 Frame = -1

Query: 696 MDEQVEVSKQIRNEVVDVKTDLSQIGFDV--------EAIQQMVAGLEEK---IELLDNK 550
           M E VE  +    +V D    L+ +  +         +AI+++ AG  E+   +E ++ K
Sbjct: 344 MKEMVEQVRLSSGKVSDTSEQLTAVAAETNERSGQIAKAIEEVAAGASEQASEVETINEK 403

Query: 549 QDAANAGIWYLCRMAGGIKE 490
            ++ +  I  +   AGGIKE
Sbjct: 404 SESLSTKIRQIAEEAGGIKE 423

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>THSB_AERPE (Q9YA66) Thermosome subunit beta (Thermosome subunit 2) (Chaperonin|
           beta subunit)
          Length = 548

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = -1

Query: 453 KLKLLDLAQTEKKPVKGLELFLESTKEVKALDSKPKTIVQNDAKKPTKT-FDVPIKSAAV 277
           ++ LLD     +KP   LE+ + S +++KAL  K + I+Q   +K   T  +V I    +
Sbjct: 245 RIALLDTPLEIEKPEIDLEISITSPEQIKALYEKQERILQEKIEKIAATGANVVITQKGI 304

Query: 276 HRSNRFLIRKEGLV 235
               +  + K+G++
Sbjct: 305 DDVAQHFLAKKGIL 318

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>NARH_BACSU (P42176) Nitrate reductase beta chain (EC 1.7.99.4)|
          Length = 487

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
 Frame = +1

Query: 4   CKTCFNXLFLT-CLQANTFRPDHEMTPKIQRNEYISTCLSWKITIRDAGYSSSIFSYQTK 180
           C+ C N   ++ C     ++ + +    + +N     C SW+  +    Y    F++QT 
Sbjct: 181 CEHCINPACVSSCPSGAMYKREEDGIVLVDQN----ACRSWRYCVSSCPYKKVYFNWQTN 236

Query: 181 QAR--MQCTPRGDAGRHQSQHEAFFTN*EPV*PVHRSTFYGHIERFRRFLGVVLHD 342
           +A     C PR +AG               +  +   T  G I    R+LGV+L+D
Sbjct: 237 KAEKCTLCFPRLEAG---------------LPTICSETCVGRI----RYLGVMLYD 273

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>SYG1_YEAST (P40528) Protein SYG1|
          Length = 902

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -1

Query: 441 LDLAQTEKKPVKGLELFLESTKEVKALDSKPKTIVQNDAKKPTKTFDVPIKSAAVHRSNR 262
           L  AQ +K+P+  LE  +       AL + PK    N  K    T    I    VHR+NR
Sbjct: 340 LSSAQRDKEPITWLETQITEWFTT-ALTNSPKDRKHNTHKLKKLTIQYSISEQMVHRNNR 398

Query: 261 FLIR 250
            +++
Sbjct: 399 SIVQ 402

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>UIDB_ECOLI (P30868) Glucuronide carrier protein (Glucuronide permease)|
          Length = 457

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 26/81 (32%), Positives = 40/81 (49%)
 Frame = +2

Query: 152 LLLYFPIKQSKQECNVHHEATPAGINHSTRPSLRIKNLFDLCTAALFMGTSNVFVGFLAS 331
           ++LYF   +S +E  V   A P+ +N S +   R + LF LC  AL +  S   V   + 
Sbjct: 194 MVLYFICFKSTRENVVRIVAQPS-LNISLQTLKRNRPLFMLCIGALCVLISTFAVSASSL 252

Query: 332 FCTMVLGLESSAFTSLVLSRN 394
           F    +  ++  FT LVL +N
Sbjct: 253 FYVRYVLNDTGLFTVLVLVQN 273

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>MRE11_THEAC (Q9HLR7) DNA double-strand break repair protein mre11|
          Length = 376

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
 Frame = -1

Query: 474 FFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEV---------KALDSKPKTIVQNDAK 322
           +  E  EKL  L +   EKKP+ GLE+  + + E           A+ S+PK  ++ D K
Sbjct: 259 YVHEISEKLSSLRVKDNEKKPLVGLEIHGDISMETVMQDISKFDNAIFSRPK--IRKDPK 316

Query: 321 KP---TKTFDV 298
            P   T+T D+
Sbjct: 317 IPNIHTETADL 327

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>GATA6_CHICK (P43693) Transcription factor GATA-6 (GATA-binding factor 6)|
          Length = 387

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = +3

Query: 405 PSPASFQFEPGPRA*VFHPLLGKTWHLFPLLYLLPFGRGTIYQH*PHPACCQAARSSLPI 584
           P P +  + P P A    P LG  W         PF    ++       C Q   + +P+
Sbjct: 119 PRPLNGSY-PAPYASYVGPQLGPAWPA------APFENSVLH-------CLQGRAAPIPV 164

Query: 585 RLPSVELLQRQSQ 623
           R PS ELL+  S+
Sbjct: 165 RAPSAELLEDLSE 177

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>RL29_MYCGA (O52340) 50S ribosomal protein L29|
          Length = 153

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
 Frame = -1

Query: 693 DEQVEVSKQIRNEVVDVKTDLSQIGFD-VEAIQQMVAGLEEKIELLDNKQDAANAGIWYL 517
           +E +++  Q++  +++ +  L+Q   D    I++    L   + +L  +    N      
Sbjct: 11  EELIQLVTQLKGRLLEYRFKLAQGELDKTHIIKETRQTLARVLTILTERDVKVNVN---- 66

Query: 516 CRMAGGIKEGINAKFFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEVKALDSKPKTIV 337
             ++  +KE    K  QE+ +K+K L +A+ ++   K     L + ++VKA   KP+   
Sbjct: 67  AMVSSFVKEQTKQKEIQESVKKIKQLRVAKLKQNKEKR----LANAEKVKAA-PKPEQKT 121

Query: 336 QNDAKKPTKT 307
           +   K P KT
Sbjct: 122 KKVKKAPKKT 131

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>TPM_SCHJA (Q26519) Tropomyosin|
          Length = 284

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/98 (17%), Positives = 46/98 (46%)
 Frame = -1

Query: 696 MDEQVEVSKQIRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYL 517
           + ++ E  ++  NE+ ++ T + Q   D + +Q+ +     K+E  + +   A A +  +
Sbjct: 29  LKKKEEEREKRENEISELNTKMKQAQIDCDEVQETLQEQMNKLEETEKRATNAEAQVAAM 88

Query: 516 CRMAGGIKEGINAKFFQEADEKLKLLDLAQTEKKPVKG 403
            R    ++E +     +  +   KL + ++T ++  +G
Sbjct: 89  TRRIRLLEEDLEVSSSRLTETLTKLEEASKTAEESERG 126

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>PRS6A_LYCES (P54776) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1)
           (LEMA-1)
          Length = 423

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 22/92 (23%), Positives = 45/92 (48%)
 Frame = -1

Query: 693 DEQVEVSKQIRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLC 514
           ++ +  S+ + NE+  +K +L +   ++++ ++ +   +EKI+L  NKQ         L 
Sbjct: 22  EDIIRASRLLDNEIRIIKEELQRTNLELDSFKEKIKENQEKIKL--NKQ---------LP 70

Query: 513 RMAGGIKEGINAKFFQEADEKLKLLDLAQTEK 418
            + G I E +     +EA+E    +DL    K
Sbjct: 71  YLVGNIVEILEMNPEEEAEEDGANIDLDSQRK 102

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>B3A4_RAT (Q8K4V2) Anion exchange protein 4 (Anion exchanger 4) (Solute|
           carrier family 4 member 9)
          Length = 953

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 22/74 (29%), Positives = 27/74 (36%)
 Frame = +3

Query: 441 RA*VFHPLLGKTWHLFPLLYLLPFGRGTIYQH*PHPACCQAARSSLPIRLPSVELLQRQS 620
           RA   H LL         +  LP GR       P P C  +     P +L  V  L RQS
Sbjct: 271 RASNLHDLLAALDAFLQEVTALPPGRWDRTARIPPPKCLPSQHKRFPSKLQEVTSLSRQS 330

Query: 621 QFETDQF*HQRPHS 662
               +   H  PH+
Sbjct: 331 AALAENKHHHGPHT 344


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,765,144
Number of Sequences: 219361
Number of extensions: 2265142
Number of successful extensions: 6902
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 6687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6898
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6912958834
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result