| Clone Name | rbags33e20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK061852.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F09, full insert sequence Length = 1415 Score = 200 bits (101), Expect = 4e-48 Identities = 239/285 (83%) Strand = Plus / Minus Query: 353 ttggagtcgagtgcctttacctccttggtgctctccagaaacaattcgagacccttcacc 412 |||||||||| ||||||| ||||| |||||||||||| |||| || |||||||| Sbjct: 983 ttggagtcgattgccttttgttcctttctgctctccagaacagattcaagccccttcact 924 Query: 413 ggcttcttttcagtttgagccaggtccaagagcttgagtttttcatccgcttcttggaaa 472 | ||| |||||| ||||||| || ||||||||||||||||| ||||| || ||| Sbjct: 923 gcctttctttcagactgagccaactctgtgagcttgagtttttcattagcttcctgaaaa 864 Query: 473 aacttggcatttattccctcttttatacctcctgccattcggcagaggtaccatatacca 532 ||||||||||||||||| ||||||| |||||| || ||| ||||||||||||||| |||| Sbjct: 863 aacttggcatttattccatcttttagacctccagctatttggcagaggtaccatacacca 804 Query: 533 gcattagccgcatcctgcttgttgtcaagcagctcgatcttctcttccaatccggctacc 592 ||||||| |||||||| || || ||||||| |||||||||| |||||||||| || ||| Sbjct: 803 gcattagttgcatcctgtttattatcaagcaactcgatcttcccttccaatccagcaacc 744 Query: 593 atctgttgaattgcttcaacgtcaaagccaatttgagacagatca 637 |||||||| |||||| ||| ||||| |||||||||||||||||| Sbjct: 743 atctgttggattgctgcaatatcaaatccaatttgagacagatca 699
>gb|AY104267.1| Zea mays PCO085704 mRNA sequence Length = 1009 Score = 107 bits (54), Expect = 5e-20 Identities = 159/194 (81%) Strand = Plus / Minus Query: 467 tggaaaaacttggcatttattccctcttttatacctcctgccattcggcagaggtaccat 526 ||||||||| ||| |||||||| ||||||| ||| ||||| | | ||||||| ||||| Sbjct: 856 tggaaaaacctggtgtttattccatcttttaaaccgcctgctacttggcagagataccag 797 Query: 527 ataccagcattagccgcatcctgcttgttgtcaagcagctcgatcttctcttccaatccg 586 ||||||| ||||||| | ||||| ||||| ||||| | ||||||||| | |||||||| Sbjct: 796 ataccagtattagccacgtcctgtttgttctcaagtaactcgatctttccctccaatcca 737 Query: 587 gctaccatctgttgaattgcttcaacgtcaaagccaatttgagacagatcagttttaaca 646 || ||||| | ||||||| ||| || ||||| |||||||||||||| ||| ||||||| Sbjct: 736 gcaaccattttctgaattgattcgacatcaaatccaatttgagacaggtcatctttaaca 677 Query: 647 tcaacgacctcatt 660 ||| ||||||||| Sbjct: 676 tcattgacctcatt 663
>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence Length = 153351 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 470 aaaaacttggcatttattccctcttttatacctcctgccattcggcagaggtaccatata 529 |||||||||||||||||||| ||||||| |||||| || ||| ||||||||||||||| | Sbjct: 53855 aaaaacttggcatttattccatcttttagacctccagctatttggcagaggtaccataca 53796 Query: 530 ccagcattagccgcatcctg 549 |||||||||| |||||||| Sbjct: 53795 ccagcattagttgcatcctg 53776 Score = 61.9 bits (31), Expect = 3e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 579 ccaatccggctaccatctgttgaattgcttcaacgtcaaagccaatttgagacagatca 637 ||||||| || ||||||||||| |||||| ||| ||||| |||||||||||||||||| Sbjct: 53577 ccaatccagcaaccatctgttggattgctgcaatatcaaatccaatttgagacagatca 53519
>gb|AC093366.9| Mus musculus chromosome 8, clone RP23-60P23, complete sequence Length = 230236 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 349 aggcttggagtcgagtgcctttacct 374 |||||||||||| ||||||||||||| Sbjct: 193694 aggcttggagtcaagtgcctttacct 193669
>emb|X98487.1|LMPGKCG L.mexicana PGKC gene for glycosomal phosphoglycerate kinase Length = 1440 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 552 tgttgtcaagcagctcgatctt 573 |||||||||||||||||||||| Sbjct: 679 tgttgtcaagcagctcgatctt 658
>emb|X98486.1|LMPGKBC L.mexicana PGKB gene for cytosolic phosphoglycerate kinase Length = 1254 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 552 tgttgtcaagcagctcgatctt 573 |||||||||||||||||||||| Sbjct: 679 tgttgtcaagcagctcgatctt 658
>emb|AL662892.11| Mouse DNA sequence from clone RP23-408L15 on chromosome 11 Contains part of a novel gene, a novel gene, a SMT3 (supressor of mif two, 3) homolog 1 (S. cerevisiae) (Smt3h1) pseudogene and a ribosomal protein S12 (Rps12) pseudogene, complete sequence Length = 106145 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Plus Query: 349 aggcttggagtcgagtgcctttacct 374 |||||||||||| ||||||||||||| Sbjct: 4106 aggcttggagtcaagtgcctttacct 4131
>gb|AF339905.1|AF339905S1 Leishmania major phosphoglycerate kinase B and phosphoglycerate kinase C genes, complete cds; and unknown genes Length = 26435 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 552 tgttgtcaagcagctcgatctt 573 |||||||||||||||||||||| Sbjct: 3513 tgttgtcaagcagctcgatctt 3492 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 552 tgttgtcaagcagctcgatctt 573 |||||||||||||||||||||| Sbjct: 847 tgttgtcaagcagctcgatctt 826
>gb|AC132331.3| Mus musculus BAC clone RP24-217D10 from chromosome 12, complete sequence Length = 176940 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 349 aggcttggagtcgagtgcctttacc 373 |||||||||||| |||||||||||| Sbjct: 14768 aggcttggagtcaagtgcctttacc 14744
>gb|AC124556.4| Mus musculus BAC clone RP23-246K11 from chromosome 12, complete sequence Length = 202214 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 349 aggcttggagtcgagtgcctttacc 373 |||||||||||| |||||||||||| Sbjct: 163626 aggcttggagtcaagtgcctttacc 163602
>gb|AC073591.17| Homo sapiens 12 BAC RP1-97G4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 108030 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 gactccaaaaatacaaagaaa 95 ||||||||||||||||||||| Sbjct: 17163 gactccaaaaatacaaagaaa 17143
>gb|AC068800.28|AC068800 Homo sapiens 12 BAC RP11-557L8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 89183 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 gactccaaaaatacaaagaaa 95 ||||||||||||||||||||| Sbjct: 88101 gactccaaaaatacaaagaaa 88081
>emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chromosome X, complete sequence Length = 97756 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 81 aaaaatacaaagaaacgaatacata 105 |||||||||||||||| |||||||| Sbjct: 55914 aaaaatacaaagaaacaaatacata 55938
>emb|CT010508.10| Mouse DNA sequence from clone RP23-250G8 on chromosome 9, complete sequence Length = 223547 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 349 aggcttggagtcgagtgcctttacc 373 |||||||||||| |||||||||||| Sbjct: 201302 aggcttggagtcaagtgcctttacc 201278
>emb|AL662893.12| Mouse DNA sequence from clone RP23-202G21 on chromosome 11, complete sequence Length = 205405 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 77 ctccaaaaatacaaagaaacgaata 101 |||||||| |||||||||||||||| Sbjct: 123960 ctccaaaactacaaagaaacgaata 123984
>emb|AL591884.11| Mouse DNA sequence from clone RP23-183N8 on chromosome 2, complete sequence Length = 204495 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 349 aggcttggagtcgagtgcctttacc 373 |||||||||| |||||||||||||| Sbjct: 61439 aggcttggaggcgagtgcctttacc 61463
>emb|CR727815.2|CNS0GOJ1 Tetraodon nigroviridis full-length cDNA Length = 1170 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 aacgttttcgtcggtttctt 324 |||||||||||||||||||| Sbjct: 364 aacgttttcgtcggtttctt 345
>gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosome 8, complete sequence Length = 228750 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 caaacaaagcaagcaagaatgcaa 195 ||||||||||||||||||| |||| Sbjct: 70874 caaacaaagcaagcaagaaagcaa 70897
>emb|AL391357.20| Human DNA sequence from clone RP11-401M16 on chromosome 1 Contains the gene for calcium/calmodulin-dependent protein kinase II (CaMKIINalpha), the gene for a novel protein (FLJ12875), a ribosomal protein S4 X-linked (RPS4X) pseudogene, the CDA gene for cytidine deaminase, the PINK1 gene for PTEN induced putative kinase 1, a novel gene (FLJ00387), the DDOST gene for dolichyl-diphosphooligosaccharide-protein glycosyltransferase and the 3' end of the KIF17 gene for kinesin family member 17, complete sequence Length = 195076 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 168 ctatcaaacaaagcaagcaagaatgcaa 195 |||||||| |||||||||||||| |||| Sbjct: 95829 ctatcaaagaaagcaagcaagaaagcaa 95856
>emb|AL162413.26| Human DNA sequence from clone RP11-109M17 on chromosome 9 Containe the 5' end of a pseudogene similar to part of A kinase (PRKA) anchor protein 8 (AKAP8), complete sequence Length = 114302 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 actccaaaaatacaaagaaa 95 |||||||||||||||||||| Sbjct: 36564 actccaaaaatacaaagaaa 36545
>emb|AL162377.10| Human DNA sequence from clone RP11-327P2 on chromosome 13 Contains 3 novel genes, a meningioma-expressed antigen 6/11 (MEA6) (MEA11) pseudogene and the 3' end of the ATP7B gene for ATPase, Cu++ transporting, beta polypeptide (Wilson disease), complete sequence Length = 169104 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cagcacgaggccttctttac 251 |||||||||||||||||||| Sbjct: 60624 cagcacgaggccttctttac 60643
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces hansenii Length = 2336804 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 ttcttctatattttcctatc 172 |||||||||||||||||||| Sbjct: 1988686 ttcttctatattttcctatc 1988667
>gb|AC156039.4| Mus musculus BAC clone RP23-24C2 from chromosome 10, complete sequence Length = 206634 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 acaaagcaagcaagaatgca 194 |||||||||||||||||||| Sbjct: 196494 acaaagcaagcaagaatgca 196513
>emb|AL929295.7| Zebrafish DNA sequence from clone BUSM1-71B9 in linkage group 7 Contains three novel genes similar to cdh1 (epithelial cadherin 1), complete sequence Length = 99338 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 tacctccttggtgctctccagaaa 393 ||||||||||| |||||||||||| Sbjct: 2150 tacctccttggcgctctccagaaa 2127
>emb|AL929461.3| Zebrafish DNA sequence from clone BUSM1-180O5 in linkage group 7 Contains two novel genes similar to cdh1 (E-cadherin) and a novel gene for a DNA polymerase, complete sequence Length = 58622 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 tacctccttggtgctctccagaaa 393 ||||||||||| |||||||||||| Sbjct: 16745 tacctccttggcgctctccagaaa 16722
>emb|BX897737.7| Zebrafish DNA sequence from clone CH211-200J6 in linkage group 7, complete sequence Length = 64259 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 tacctccttggtgctctccagaaa 393 ||||||||||| |||||||||||| Sbjct: 26266 tacctccttggcgctctccagaaa 26243
>emb|CR388055.6| Zebrafish DNA sequence from clone DKEY-56D12 in linkage group 5, complete sequence Length = 190426 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aatgcaaaacgtgttttaat 21 |||||||||||||||||||| Sbjct: 58394 aatgcaaaacgtgttttaat 58413
>gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete sequence Length = 150214 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aaatgactccaaaaatacaa 90 |||||||||||||||||||| Sbjct: 135619 aaatgactccaaaaatacaa 135600
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 aaaaatacaaagaaacgaatacat 104 ||||||||||| |||||||||||| Sbjct: 13691862 aaaaatacaaataaacgaatacat 13691885
>gb|AC019052.7| Homo sapiens BAC clone RP11-96E16 from 2, complete sequence Length = 117955 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aatacaaagaaacgaataca 103 |||||||||||||||||||| Sbjct: 61420 aatacaaagaaacgaataca 61439
>dbj|AP004298.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0409D09 Length = 150485 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 aaaaatacaaagaaacgaatacat 104 ||||||||||| |||||||||||| Sbjct: 42854 aaaaatacaaataaacgaatacat 42877
>emb|BX322631.8| Zebrafish DNA sequence from clone DKEY-173L11, complete sequence Length = 161710 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 370 tacctccttggtgctctccagaaa 393 ||||||||||| |||||||||||| Sbjct: 120618 tacctccttggcgctctccagaaa 120641
>ref|XM_317666.2| Anopheles gambiae str. PEST ENSANGP00000018515 (ENSANGG00000016026), partial mRNA Length = 1221 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 557 tcaagcagctcgatcttctc 576 |||||||||||||||||||| Sbjct: 926 tcaagcagctcgatcttctc 907
>gb|AC133944.4| Mus musculus BAC clone RP24-113L10 from 10, complete sequence Length = 167418 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 acaaagcaagcaagaatgca 194 |||||||||||||||||||| Sbjct: 52586 acaaagcaagcaagaatgca 52567 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,123,663 Number of Sequences: 3902068 Number of extensions: 7123663 Number of successful extensions: 123134 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122985 Number of HSP's gapped (non-prelim): 148 length of query: 696 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 673 effective length of database: 17,143,297,704 effective search space: 11537439354792 effective search space used: 11537439354792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)