ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32p13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463771.1| Oryza sativa (japonica cultivar-group), mRNA 94 4e-16
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
3dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
4dbj|AK068943.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
5emb|BX465868.6| Zebrafish DNA sequence from clone DKEY-42I9 in l... 42 1.4
6gb|AC102999.7| Rattus norvegicus 7 BAC CH230-33J22 (Children's H... 40 5.6
7ref|XM_359874.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.6
8gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, com... 40 5.6
9gb|AC113031.11| Mus musculus chromosome 14, clone RP23-220B20, c... 40 5.6
10gb|AC147133.2| Pan troglodytes BAC clone CH251-372A19 from Y, co... 40 5.6
11ref|XM_809218.1| Trypanosoma cruzi strain CL Brener sterol C-24 ... 40 5.6
12gb|AC114600.4| Mus musculus chromosome 5, clone RP23-332O18, com... 40 5.6
13gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete se... 40 5.6
14emb|AL355985.18| Human DNA sequence from clone RP11-98O17 on chr... 40 5.6
15emb|BX284692.14| Zebrafish DNA sequence from clone CH211-282O22 ... 40 5.6
16dbj|BS000646.3| Pan troglodytes chromosome Y clone: PTB-569F12, ... 40 5.6
17dbj|BS000644.2| Pan troglodytes chromosome Y clone: PTB-321M16, ... 40 5.6
18gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 5.6
19gb|AC104123.2| Homo sapiens chromosome 5 clone RP11-417I14, comp... 40 5.6
20gb|AC104136.5| Homo sapiens BAC clone RP11-782E2 from 4, complet... 40 5.6
21gb|AC010740.7| Homo sapiens BAC clone RP11-493I5 from 2, complet... 40 5.6
22dbj|AP002759.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.6
23dbj|AK112960.1| Ciona intestinalis cDNA, clone:cicl014n08, full ... 40 5.6
24gb|AC140301.3| Mus musculus BAC clone RP23-435M8 from 5, complet... 40 5.6 
>ref|XM_463771.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2411

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 122/148 (82%)
 Strand = Plus / Minus

                                                                        
Query: 218  cggtcgaagacctcggtttaccaccgttcgacgagttgaggtgcagagagacaaagatca 277
            |||| |||| ||| |||||||| | |||||| |||||||||||||| || ||||| ||||
Sbjct: 2270 cggttgaagccctaggtttaccgctgttcgaggagttgaggtgcagtgaaacaaatatca 2211

                                                                        
Query: 278  ccccgatcacnacaatcaagaagccgacgagcgtgctgaagaagagggccccgggctgnc 337
            | ||||| || || |||||| | || || |||||||||||||| || ||||| || || |
Sbjct: 2210 ctccgataacaactatcaagcaacccacaagcgtgctgaagaaaagagccccaggatgtc 2151

                                        
Query: 338  tcgtntgcacaaacccgtacactccccc 365
            | || ||||||||||| || ||||||||
Sbjct: 2150 ttgtctgcacaaacccatagactccccc 2123
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
             complete sequence
          Length = 35954743

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 122/148 (82%)
 Strand = Plus / Minus

                                                                         
Query: 218   cggtcgaagacctcggtttaccaccgttcgacgagttgaggtgcagagagacaaagatca 277
             |||| |||| ||| |||||||| | |||||| |||||||||||||| || ||||| ||||
Sbjct: 40797 cggttgaagccctaggtttaccgctgttcgaggagttgaggtgcagtgaaacaaatatca 40738

                                                                         
Query: 278   ccccgatcacnacaatcaagaagccgacgagcgtgctgaagaagagggccccgggctgnc 337
             | ||||| || || |||||| | || || |||||||||||||| || ||||| || || |
Sbjct: 40737 ctccgataacaactatcaagcaacccacaagcgtgctgaagaaaagagccccaggatgtc 40678

                                         
Query: 338   tcgtntgcacaaacccgtacactccccc 365
             | || ||||||||||| || ||||||||
Sbjct: 40677 ttgtctgcacaaacccatagactccccc 40650
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>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1370C05
          Length = 148271

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 122/148 (82%)
 Strand = Plus / Minus

                                                                         
Query: 218   cggtcgaagacctcggtttaccaccgttcgacgagttgaggtgcagagagacaaagatca 277
             |||| |||| ||| |||||||| | |||||| |||||||||||||| || ||||| ||||
Sbjct: 35406 cggttgaagccctaggtttaccgctgttcgaggagttgaggtgcagtgaaacaaatatca 35347

                                                                         
Query: 278   ccccgatcacnacaatcaagaagccgacgagcgtgctgaagaagagggccccgggctgnc 337
             | ||||| || || |||||| | || || |||||||||||||| || ||||| || || |
Sbjct: 35346 ctccgataacaactatcaagcaacccacaagcgtgctgaagaaaagagccccaggatgtc 35287

                                         
Query: 338   tcgtntgcacaaacccgtacactccccc 365
             | || ||||||||||| || ||||||||
Sbjct: 35286 ttgtctgcacaaacccatagactccccc 35259
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>dbj|AK068943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170D03, full
            insert sequence
          Length = 2411

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 122/148 (82%)
 Strand = Plus / Minus

                                                                        
Query: 218  cggtcgaagacctcggtttaccaccgttcgacgagttgaggtgcagagagacaaagatca 277
            |||| |||| ||| |||||||| | |||||| |||||||||||||| || ||||| ||||
Sbjct: 2270 cggttgaagccctaggtttaccgctgttcgaggagttgaggtgcagtgaaacaaatatca 2211

                                                                        
Query: 278  ccccgatcacnacaatcaagaagccgacgagcgtgctgaagaagagggccccgggctgnc 337
            | ||||| || || |||||| | || || |||||||||||||| || ||||| || || |
Sbjct: 2210 ctccgataacaactatcaagcaacccacaagcgtgctgaagaaaagagccccaggatgtc 2151

                                        
Query: 338  tcgtntgcacaaacccgtacactccccc 365
            | || ||||||||||| || ||||||||
Sbjct: 2150 ttgtctgcacaaacccatagactccccc 2123
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>emb|BX465868.6| Zebrafish DNA sequence from clone DKEY-42I9 in linkage group 22,
             complete sequence
          Length = 222195

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    catacaacaaacaaaacttca 38
             |||||||||||||||||||||
Sbjct: 60157 catacaacaaacaaaacttca 60137
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>gb|AC102999.7| Rattus norvegicus 7 BAC CH230-33J22 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 209654

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   tggggatggctcacaagatc 172
             ||||||||||||||||||||
Sbjct: 37023 tggggatggctcacaagatc 37042
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>ref|XM_359874.1| Magnaporthe grisea 70-15 hypothetical protein (MG04903.4) partial
            mRNA
          Length = 2067

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 368  acgtcaccaggatgatgtcg 387
            ||||||||||||||||||||
Sbjct: 1638 acgtcaccaggatgatgtcg 1657
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>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence
          Length = 574126

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    agccggtcgaagacctcggt 234
              ||||||||||||||||||||
Sbjct: 286051 agccggtcgaagacctcggt 286032
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>gb|AC113031.11| Mus musculus chromosome 14, clone RP23-220B20, complete sequence
          Length = 250215

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     tcatacaacaaacaaaactt 36
              ||||||||||||||||||||
Sbjct: 154529 tcatacaacaaacaaaactt 154548
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>gb|AC147133.2| Pan troglodytes BAC clone CH251-372A19 from Y, complete sequence
          Length = 192074

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 139   cctcactgctgtgctggggatggc 162
             ||||||||||||||||||| ||||
Sbjct: 45298 cctcactgctgtgctgggggtggc 45321
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>ref|XM_809218.1| Trypanosoma cruzi strain CL Brener sterol C-24 reductase
           (Tc00.1047053507709.90) partial mRNA
          Length = 1467

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  acatacaaaagctgtgcaaa 69
           ||||||||||||||||||||
Sbjct: 860 acatacaaaagctgtgcaaa 841
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>gb|AC114600.4| Mus musculus chromosome 5, clone RP23-332O18, complete sequence
          Length = 203401

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 24     acaaacaaaacttcaccactaaaa 47
              ||||||||||||||||| ||||||
Sbjct: 198789 acaaacaaaacttcacccctaaaa 198766
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>gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete sequence
          Length = 158384

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 26    aaacaaaacttcaccactaaaaat 49
             ||||||||| ||||||||||||||
Sbjct: 53728 aaacaaaacatcaccactaaaaat 53705
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>emb|AL355985.18| Human DNA sequence from clone RP11-98O17 on chromosome 9 Contains a
             putative novel pseudogene, complete sequence
          Length = 64969

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 125   acactgtaacagctcctcactgct 148
             ||||||||||||||||| ||||||
Sbjct: 17448 acactgtaacagctcctaactgct 17471
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>emb|BX284692.14| Zebrafish DNA sequence from clone CH211-282O22 in linkage group 17,
              complete sequence
          Length = 162970

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    aacaaaaagtctagttcaaa 125
              ||||||||||||||||||||
Sbjct: 104778 aacaaaaagtctagttcaaa 104797
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>dbj|BS000646.3| Pan troglodytes chromosome Y clone: PTB-569F12, complete sequence
          Length = 225175

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 139    cctcactgctgtgctggggatggc 162
              ||||||||||||||||||| ||||
Sbjct: 123185 cctcactgctgtgctgggggtggc 123208
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>dbj|BS000644.2| Pan troglodytes chromosome Y clone: PTB-321M16, complete sequence
          Length = 134015

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 139   cctcactgctgtgctggggatggc 162
             ||||||||||||||||||| ||||
Sbjct: 65778 cctcactgctgtgctgggggtggc 65801
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 139      cctcactgctgtgctggggatggc 162
                ||||||||||||||||||| ||||
Sbjct: 18992721 cctcactgctgtgctgggggtggc 18992698
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>gb|AC104123.2| Homo sapiens chromosome 5 clone RP11-417I14, complete sequence
          Length = 129296

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     caacaaacaaaacttcacca 41
              ||||||||||||||||||||
Sbjct: 119756 caacaaacaaaacttcacca 119775
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>gb|AC104136.5| Homo sapiens BAC clone RP11-782E2 from 4, complete sequence
          Length = 149715

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    atacaacaaacaaaacttca 38
             ||||||||||||||||||||
Sbjct: 30874 atacaacaaacaaaacttca 30855
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>gb|AC010740.7| Homo sapiens BAC clone RP11-493I5 from 2, complete sequence
          Length = 184455

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 35     ttcaccactaaaaatacatacaaaagct 62
              |||||||||||||||| |||||| ||||
Sbjct: 118340 ttcaccactaaaaatatatacaagagct 118313
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>dbj|AP002759.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-686G23, complete
              sequences
          Length = 177933

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     caacaaacaaaacttcacca 41
              ||||||||||||||||||||
Sbjct: 142347 caacaaacaaaacttcacca 142366
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>dbj|AK112960.1| Ciona intestinalis cDNA, clone:cicl014n08, full insert sequence
          Length = 648

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 19 atacaacaaacaaaacttca 38
          ||||||||||||||||||||
Sbjct: 52 atacaacaaacaaaacttca 33
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>gb|AC140301.3| Mus musculus BAC clone RP23-435M8 from 5, complete sequence
          Length = 197633

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 24    acaaacaaaacttcaccactaaaa 47
             ||||||||||||||||| ||||||
Sbjct: 40033 acaaacaaaacttcacccctaaaa 40010


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,330,064
Number of Sequences: 3902068
Number of extensions: 4330064
Number of successful extensions: 86918
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86802
Number of HSP's gapped (non-prelim): 116
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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