ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33e19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BIRC2_MOUSE (Q62210) Baculoviral IAP repeat-containing protein 2... 31 2.7
2TLR4_BOVIN (Q9GL65) Toll-like receptor 4 precursor (CD284 antigen) 30 7.9

>BIRC2_MOUSE (Q62210) Baculoviral IAP repeat-containing protein 2 (Inhibitor of|
           apoptosis protein 2) (MIAP2) (MIAP-2)
          Length = 612

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 116 RRGLHSGENYDAPGSVHDVLFSDGDGRGEEHNRQQDPDSSSGD 244
           R+ L +GENY     +  VL +  D R EE   +Q  + +SGD
Sbjct: 409 RQILATGENYRTVNDIVSVLLNAEDERREEEKERQTEEMASGD 451



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>TLR4_BOVIN (Q9GL65) Toll-like receptor 4 precursor (CD284 antigen)|
          Length = 841

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = -1

Query: 430 LRSLPTDIVFDNVTGISFTCDLSDNIAAPWPXXXXXXXXXL----CAPEMSLPALPVSPL 263
           L++LP  + + N+T  +F C         W               CA  + +  +PV   
Sbjct: 564 LQNLPRSLTWLNLTQNAFACVCEHQSFLQWVKDQRQLLVGAEQMMCAEPLDMEDMPVLSF 623

Query: 262 SGSSAGISRTGIGILLPVVLLTTAISI 182
             ++  +S+T I + +  VLL + + +
Sbjct: 624 RNATCQLSKTIISVSVVTVLLVSVVGV 650


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,067,363
Number of Sequences: 219361
Number of extensions: 1669921
Number of successful extensions: 4552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4551
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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