ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32p10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189333.1| Oryza sativa (japonica cultivar-group), predic... 222 7e-55
2dbj|AK109369.2| Oryza sativa (japonica cultivar-group) cDNA clon... 222 7e-55
3dbj|AK103090.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 7e-55
4dbj|AK058574.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 7e-55
5emb|AJ549215.1|ZMA549215 Zea mays mRNA for chloroplast SRP recep... 145 1e-31
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 119 7e-24
7dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic D... 119 7e-24
8ref|NM_130140.2| Arabidopsis thaliana CPFTSY; GTP binding / RNA ... 70 6e-09
9gb|AY051026.1| Arabidopsis thaliana putative signal recognition ... 70 6e-09
10gb|AF360125.1| Arabidopsis thaliana putative signal recognition ... 70 6e-09
11emb|AJ010820.1|ATH010820 Arabidopsis thaliana mRNA for chloropla... 70 6e-09
12emb|BX819323.1|CNS0A8Z3 Arabidopsis thaliana Full-length cDNA Co... 70 6e-09
13gb|AF120112.1|AF120112 Arabidopsis thaliana chloroplast SRP rece... 70 6e-09
14gb|AC004665.3| Arabidopsis thaliana chromosome 2 clone F4I18 map... 46 0.087
15emb|BX819043.1|CNS0A7Y2 Arabidopsis thaliana Full-length cDNA Co... 44 0.34
16gb|AC116725.13| Mus musculus chromosome 8, clone RP23-272P20, co... 44 0.34
17gb|AC118006.9| Mus musculus chromosome 14, clone RP23-344J14, co... 42 1.4
18gb|AC107798.10| Mus musculus chromosome 8, clone RP23-4D24, comp... 40 5.3
19gb|AC117519.3| Homo sapiens 3 BAC RP11-54C22 (Roswell Park Cance... 40 5.3
20gb|AC124741.5| Mus musculus BAC clone RP23-357D17 from chromosom... 40 5.3
21gb|AC110255.10| Mus musculus, clone RP23-274K7, complete sequence 40 5.3
22emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4,... 40 5.3
23emb|CR933104.2| Medicago truncatula chromosome 5 clone mth2-25b3... 40 5.3
24gb|BC094228.1| Mus musculus leucine-rich repeats and immunoglobu... 40 5.3
25gb|AC012014.20| Homo sapiens 3 BAC RP11-255N4 (Roswell Park Canc... 40 5.3
26dbj|AK033684.1| Mus musculus adult male cecum cDNA, RIKEN full-l... 40 5.3
27dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
28dbj|AK173030.1| Mus musculus mRNA for mKIAA0806 protein 40 5.3
29ref|NM_001025067.1| Mus musculus leucine-rich repeats and immuno... 40 5.3
30emb|BX323067.11| Zebrafish DNA sequence from clone CH211-277B21 ... 40 5.3
31gb|AC146300.4| Mus musculus BAC clone RP23-38L11 from 3, complet... 40 5.3 
>ref|NM_189333.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1092

 Score =  222 bits (112), Expect = 7e-55
 Identities = 193/220 (87%)
 Strand = Plus / Minus

                                                                        
Query: 181  aaaatggcttcaacaaatgcctctgcatcaaaaggttggagatcttccaccccttcgccg 240
            ||||||||||||||||||||||| ||||||||||| || ||||| |||| |||||| || 
Sbjct: 1085 aaaatggcttcaacaaatgcctcagcatcaaaaggctgaagatcctccatcccttcacca 1026

                                                                        
Query: 241  acaccaacaaacttgactggaattccaagttcgtctacgacgctcaccacacagccacca 300
            ||||||| |||||| ||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 1025 acaccaataaactttactggaattccaagttcatctacaacgctaaccacacaaccacca 966

                                                                        
Query: 301  cgagcagtgccgtctagcttcgtcagaatgaatcctgtgattccaacaacatcgttgaac 360
            |||||||| || || ||||| || || | ||||||||||| |||||||||||| ||||||
Sbjct: 965  cgagcagttccatcaagctttgttaggacgaatcctgtgactccaacaacatcattgaac 906

                                                    
Query: 361  tccttcgcttgctgtagcatatttaatccagttgtgccat 400
            ||| ||||||| ||||||||||| || ||||| |||||||
Sbjct: 905  tccctcgcttgttgtagcatattcaagccagtcgtgccat 866
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>dbj|AK109369.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D11, full
            insert sequence
          Length = 1308

 Score =  222 bits (112), Expect = 7e-55
 Identities = 193/220 (87%)
 Strand = Plus / Minus

                                                                        
Query: 181  aaaatggcttcaacaaatgcctctgcatcaaaaggttggagatcttccaccccttcgccg 240
            ||||||||||||||||||||||| ||||||||||| || ||||| |||| |||||| || 
Sbjct: 1127 aaaatggcttcaacaaatgcctcagcatcaaaaggctgaagatcctccatcccttcacca 1068

                                                                        
Query: 241  acaccaacaaacttgactggaattccaagttcgtctacgacgctcaccacacagccacca 300
            ||||||| |||||| ||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 1067 acaccaataaactttactggaattccaagttcatctacaacgctaaccacacaaccacca 1008

                                                                        
Query: 301  cgagcagtgccgtctagcttcgtcagaatgaatcctgtgattccaacaacatcgttgaac 360
            |||||||| || || ||||| || || | ||||||||||| |||||||||||| ||||||
Sbjct: 1007 cgagcagttccatcaagctttgttaggacgaatcctgtgactccaacaacatcattgaac 948

                                                    
Query: 361  tccttcgcttgctgtagcatatttaatccagttgtgccat 400
            ||| ||||||| ||||||||||| || ||||| |||||||
Sbjct: 947  tccctcgcttgttgtagcatattcaagccagtcgtgccat 908
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>dbj|AK103090.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118J07, full
            insert sequence
          Length = 1221

 Score =  222 bits (112), Expect = 7e-55
 Identities = 193/220 (87%)
 Strand = Plus / Minus

                                                                        
Query: 181  aaaatggcttcaacaaatgcctctgcatcaaaaggttggagatcttccaccccttcgccg 240
            ||||||||||||||||||||||| ||||||||||| || ||||| |||| |||||| || 
Sbjct: 1040 aaaatggcttcaacaaatgcctcagcatcaaaaggctgaagatcctccatcccttcacca 981

                                                                        
Query: 241  acaccaacaaacttgactggaattccaagttcgtctacgacgctcaccacacagccacca 300
            ||||||| |||||| ||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 980  acaccaataaactttactggaattccaagttcatctacaacgctaaccacacaaccacca 921

                                                                        
Query: 301  cgagcagtgccgtctagcttcgtcagaatgaatcctgtgattccaacaacatcgttgaac 360
            |||||||| || || ||||| || || | ||||||||||| |||||||||||| ||||||
Sbjct: 920  cgagcagttccatcaagctttgttaggacgaatcctgtgactccaacaacatcattgaac 861

                                                    
Query: 361  tccttcgcttgctgtagcatatttaatccagttgtgccat 400
            ||| ||||||| ||||||||||| || ||||| |||||||
Sbjct: 860  tccctcgcttgttgtagcatattcaagccagtcgtgccat 821
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>dbj|AK058574.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-E11, full
            insert sequence
          Length = 1344

 Score =  222 bits (112), Expect = 7e-55
 Identities = 193/220 (87%)
 Strand = Plus / Minus

                                                                        
Query: 181  aaaatggcttcaacaaatgcctctgcatcaaaaggttggagatcttccaccccttcgccg 240
            ||||||||||||||||||||||| ||||||||||| || ||||| |||| |||||| || 
Sbjct: 1148 aaaatggcttcaacaaatgcctcagcatcaaaaggctgaagatcctccatcccttcacca 1089

                                                                        
Query: 241  acaccaacaaacttgactggaattccaagttcgtctacgacgctcaccacacagccacca 300
            ||||||| |||||| ||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 1088 acaccaataaactttactggaattccaagttcatctacaacgctaaccacacaaccacca 1029

                                                                        
Query: 301  cgagcagtgccgtctagcttcgtcagaatgaatcctgtgattccaacaacatcgttgaac 360
            |||||||| || || ||||| || || | ||||||||||| |||||||||||| ||||||
Sbjct: 1028 cgagcagttccatcaagctttgttaggacgaatcctgtgactccaacaacatcattgaac 969

                                                    
Query: 361  tccttcgcttgctgtagcatatttaatccagttgtgccat 400
            ||| ||||||| ||||||||||| || ||||| |||||||
Sbjct: 968  tccctcgcttgttgtagcatattcaagccagtcgtgccat 929
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>emb|AJ549215.1|ZMA549215 Zea mays mRNA for chloroplast SRP receptor cpFtsY precursor (csr1
            gene)
          Length = 1699

 Score =  145 bits (73), Expect = 1e-31
 Identities = 169/201 (84%)
 Strand = Plus / Minus

                                                                        
Query: 176  atgggaaaatggcttcaacaaatgcctctgcatcaaaaggttggagatcttccacccctt 235
            ||||||| |||||||||||||||||||| || ||||||||||| || ||||||| |||||
Sbjct: 1130 atgggaagatggcttcaacaaatgcctcggcgtcaaaaggttgcaggtcttccatccctt 1071

                                                                        
Query: 236  cgccgacaccaacaaacttgactggaattccaagttcgtctacgacgctcaccacacagc 295
            | || || ||||  ||||| || || || ||||| || || || ||||| ||||||||||
Sbjct: 1070 caccaaccccaatgaacttcaccgggatgccaagctcatccacaacgctaaccacacagc 1011

                                                                        
Query: 296  caccacgagcagtgccgtctagcttcgtcagaatgaatcctgtgattccaacaacatcgt 355
            |||| || |||||||| || ||||| ||||| |||||||| |||| ||| |||||||| |
Sbjct: 1010 caccgcgcgcagtgccatcgagctttgtcaggatgaatccagtgactcctacaacatcat 951

                                 
Query: 356  tgaactccttcgcttgctgta 376
            |||||||| | ||||||||||
Sbjct: 950  tgaactcccttgcttgctgta 930
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  119 bits (60), Expect = 7e-24
 Identities = 93/104 (89%)
 Strand = Plus / Plus

                                                                            
Query: 181      aaaatggcttcaacaaatgcctctgcatcaaaaggttggagatcttccaccccttcgccg 240
                ||||||||||||||||||||||| ||||||||||| || ||||| |||| |||||| || 
Sbjct: 42227139 aaaatggcttcaacaaatgcctcagcatcaaaaggctgaagatcctccatcccttcacca 42227198

                                                            
Query: 241      acaccaacaaacttgactggaattccaagttcgtctacgacgct 284
                ||||||| |||||| ||||||||||||||||| ||||| |||||
Sbjct: 42227199 acaccaataaactttactggaattccaagttcatctacaacgct 42227242



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                            
Query: 286      accacacagccaccacgagcagtgccgtctagcttcgtcagaatgaatcctgtgattcca 345
                |||||||| |||||||||||||| || || ||||| || || | ||||||||||| ||||
Sbjct: 42227330 accacacaaccaccacgagcagttccatcaagctttgttaggacgaatcctgtgactcca 42227389

                     
Query: 346      acaac 350
                |||||
Sbjct: 42227390 acaac 42227394



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                    
Query: 349      acatcgttgaactccttcgcttgctgtagcatatttaatccagttgtgccat 400
                ||||| ||||||||| ||||||| ||||||||||| || ||||| |||||||
Sbjct: 42227482 acatcattgaactccctcgcttgttgtagcatattcaagccagtcgtgccat 42227533
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>dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1294_F06
          Length = 121088

 Score =  119 bits (60), Expect = 7e-24
 Identities = 93/104 (89%)
 Strand = Plus / Plus

                                                                          
Query: 181    aaaatggcttcaacaaatgcctctgcatcaaaaggttggagatcttccaccccttcgccg 240
              ||||||||||||||||||||||| ||||||||||| || ||||| |||| |||||| || 
Sbjct: 100337 aaaatggcttcaacaaatgcctcagcatcaaaaggctgaagatcctccatcccttcacca 100396

                                                          
Query: 241    acaccaacaaacttgactggaattccaagttcgtctacgacgct 284
              ||||||| |||||| ||||||||||||||||| ||||| |||||
Sbjct: 100397 acaccaataaactttactggaattccaagttcatctacaacgct 100440



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                          
Query: 286    accacacagccaccacgagcagtgccgtctagcttcgtcagaatgaatcctgtgattcca 345
              |||||||| |||||||||||||| || || ||||| || || | ||||||||||| ||||
Sbjct: 100528 accacacaaccaccacgagcagttccatcaagctttgttaggacgaatcctgtgactcca 100587

                   
Query: 346    acaac 350
              |||||
Sbjct: 100588 acaac 100592



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                  
Query: 349    acatcgttgaactccttcgcttgctgtagcatatttaatccagttgtgccat 400
              ||||| ||||||||| ||||||| ||||||||||| || ||||| |||||||
Sbjct: 100680 acatcattgaactccctcgcttgttgtagcatattcaagccagtcgtgccat 100731
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>ref|NM_130140.2| Arabidopsis thaliana CPFTSY; GTP binding / RNA binding /
            nucleoside-triphosphatase/ nucleotide binding AT2G45770
            (CPFTSY) mRNA, complete cds
          Length = 1438

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 134/167 (80%)
 Strand = Plus / Minus

                                                                        
Query: 193  acaaatgcctctgcatcaaaaggttggagatcttccaccccttcgccgacaccaacaaac 252
            ||||| ||||| | ||||||||||||||||||||| ||  |||| || ||||| | ||||
Sbjct: 1112 acaaaagcctccggatcaaaaggttggagatcttctacagcttctcctacaccgataaac 1053

                                                                        
Query: 253  ttgactggaattccaagttcgtctacgacgctcaccacacagccaccacgagcagtgccg 312
            || || ||||| || | ||| || || || || ||||||||||| || | ||||| ||| 
Sbjct: 1052 tttacgggaatgcccaattcctcaaccacactgaccacacagcctcctctagcagagcca 993

                                                           
Query: 313  tctagcttcgtcagaatgaatcctgtgattccaacaacatcgttgaa 359
            ||||| |||||||  || || || ||||| |||||||| ||||||||
Sbjct: 992  tctagtttcgtcaatatcaaaccggtgataccaacaacctcgttgaa 946
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>gb|AY051026.1| Arabidopsis thaliana putative signal recognition particle receptor
            alpha subunit (At2g45770) mRNA, complete cds
          Length = 1132

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 134/167 (80%)
 Strand = Plus / Minus

                                                                        
Query: 193  acaaatgcctctgcatcaaaaggttggagatcttccaccccttcgccgacaccaacaaac 252
            ||||| ||||| | ||||||||||||||||||||| ||  |||| || ||||| | ||||
Sbjct: 1082 acaaaagcctccggatcaaaaggttggagatcttctacagcttctcctacaccgataaac 1023

                                                                        
Query: 253  ttgactggaattccaagttcgtctacgacgctcaccacacagccaccacgagcagtgccg 312
            || || ||||| || | ||| || || || || ||||||||||| || | ||||| ||| 
Sbjct: 1022 tttacgggaatgcccaattcctcaaccacactgaccacacagcctcctctagcagagcca 963

                                                           
Query: 313  tctagcttcgtcagaatgaatcctgtgattccaacaacatcgttgaa 359
            ||||| |||||||  || || || ||||| |||||||| ||||||||
Sbjct: 962  tctagtttcgtcaatatcaaaccggtgataccaacaacctcgttgaa 916
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>gb|AF360125.1| Arabidopsis thaliana putative signal recognition particle receptor
            alpha subunit (At2g45770) mRNA, complete cds
          Length = 1454

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 134/167 (80%)
 Strand = Plus / Minus

                                                                        
Query: 193  acaaatgcctctgcatcaaaaggttggagatcttccaccccttcgccgacaccaacaaac 252
            ||||| ||||| | ||||||||||||||||||||| ||  |||| || ||||| | ||||
Sbjct: 1112 acaaaagcctccggatcaaaaggttggagatcttctacagcttctcctacaccgataaac 1053

                                                                        
Query: 253  ttgactggaattccaagttcgtctacgacgctcaccacacagccaccacgagcagtgccg 312
            || || ||||| || | ||| || || || || ||||||||||| || | ||||| ||| 
Sbjct: 1052 tttacgggaatgcccaattcctcaaccacactgaccacacagcctcctctagcagagcca 993

                                                           
Query: 313  tctagcttcgtcagaatgaatcctgtgattccaacaacatcgttgaa 359
            ||||| |||||||  || || || ||||| |||||||| ||||||||
Sbjct: 992  tctagtttcgtcaatatcaaaccggtgataccaacaacctcgttgaa 946
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>emb|AJ010820.1|ATH010820 Arabidopsis thaliana mRNA for chloroplast FtsY homolog
          Length = 1374

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 134/167 (80%)
 Strand = Plus / Minus

                                                                        
Query: 193  acaaatgcctctgcatcaaaaggttggagatcttccaccccttcgccgacaccaacaaac 252
            ||||| ||||| | ||||||||||||||||||||| ||  |||| || ||||| | ||||
Sbjct: 1092 acaaaagcctccggatcaaaaggttggagatcttctacagcttctcctacaccgataaac 1033

                                                                        
Query: 253  ttgactggaattccaagttcgtctacgacgctcaccacacagccaccacgagcagtgccg 312
            || || ||||| || | ||| || || || || ||||||||||| || | ||||| ||| 
Sbjct: 1032 tttacgggaatgcccaattcctcaaccacactgaccacacagcctcctctagcagagcca 973

                                                           
Query: 313  tctagcttcgtcagaatgaatcctgtgattccaacaacatcgttgaa 359
            ||||| |||||||  || || || ||||| |||||||| ||||||||
Sbjct: 972  tctagtttcgtcaatatcaaaccggtgataccaacaacctcgttgaa 926
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>emb|BX819323.1|CNS0A8Z3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB68ZF02 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1356

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 134/167 (80%)
 Strand = Plus / Minus

                                                                        
Query: 193  acaaatgcctctgcatcaaaaggttggagatcttccaccccttcgccgacaccaacaaac 252
            ||||| ||||| | ||||||||||||||||||||| ||  |||| || ||||| | ||||
Sbjct: 1093 acaaaagcctccggatcaaaaggttggagatcttctacagcttctcctacaccgataaac 1034

                                                                        
Query: 253  ttgactggaattccaagttcgtctacgacgctcaccacacagccaccacgagcagtgccg 312
            || || ||||| || | ||| || || || || ||||||||||| || | ||||| ||| 
Sbjct: 1033 tttacgggaatgcccaattcctcaaccacactgaccacacagcctcctctagcagagcca 974

                                                           
Query: 313  tctagcttcgtcagaatgaatcctgtgattccaacaacatcgttgaa 359
            ||||| |||||||  || || || ||||| |||||||| ||||||||
Sbjct: 973  tctagtttcgtcaatatcaaaccggtgataccaacaacctcgttgaa 927
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>gb|AF120112.1|AF120112 Arabidopsis thaliana chloroplast SRP receptor homolog, alpha subunit
            CPFTSY mRNA, complete cds
          Length = 1103

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 134/167 (80%)
 Strand = Plus / Minus

                                                                        
Query: 193  acaaatgcctctgcatcaaaaggttggagatcttccaccccttcgccgacaccaacaaac 252
            ||||| ||||| | ||||||||||||||||||||| ||  |||| || ||||| | ||||
Sbjct: 1082 acaaaagcctccggatcaaaaggttggagatcttctacagcttctcctacaccgataaac 1023

                                                                        
Query: 253  ttgactggaattccaagttcgtctacgacgctcaccacacagccaccacgagcagtgccg 312
            || || ||||| || | ||| || || || || ||||||||||| || | ||||| ||| 
Sbjct: 1022 tttacgggaatgcccaattcctcaaccacactgaccacacagcctcctctagcagagcca 963

                                                           
Query: 313  tctagcttcgtcagaatgaatcctgtgattccaacaacatcgttgaa 359
            ||||| |||||||  || || || ||||| |||||||| ||||||||
Sbjct: 962  tctagtttcgtcaatatcaaaccggtgataccaacaacctcgttgaa 916
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>gb|AC004665.3| Arabidopsis thaliana chromosome 2 clone F4I18 map CIC02E07, complete
             sequence
          Length = 101647

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 193   acaaatgcctctgcatcaaaaggttggagatcttc 227
             ||||| ||||| | |||||||||||||||||||||
Sbjct: 73533 acaaaagcctccggatcaaaaggttggagatcttc 73567
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>emb|BX819043.1|CNS0A7Y2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB3ZA07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1451

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                       
Query: 286 accacacagccaccacgagcagtgccgtctagcttcgtcagaatgaatcctgtgattcca 345
           ||||||||||| || | ||||| ||| ||||| |||||||  || || || ||||| |||
Sbjct: 999 accacacagcctcctctagcagagccatctagtttcgtcaatatcaaaccggtgatacca 940

                         
Query: 346 acaacatcgttgaa 359
           ||||| ||||||||
Sbjct: 939 acaacctcgttgaa 926
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>gb|AC116725.13| Mus musculus chromosome 8, clone RP23-272P20, complete sequence
          Length = 201130

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 324   cagaatgaatcctgtgattcca 345
             ||||||||||||||||||||||
Sbjct: 74230 cagaatgaatcctgtgattcca 74209
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>gb|AC118006.9| Mus musculus chromosome 14, clone RP23-344J14, complete sequence
          Length = 232234

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 168    tcaaatttatgggaaaatggc 188
              |||||||||||||||||||||
Sbjct: 115557 tcaaatttatgggaaaatggc 115537
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>gb|AC107798.10| Mus musculus chromosome 8, clone RP23-4D24, complete sequence
          Length = 234420

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    atatttaatccagttgtgcc 398
              ||||||||||||||||||||
Sbjct: 129330 atatttaatccagttgtgcc 129349
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>gb|AC117519.3| Homo sapiens 3 BAC RP11-54C22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 41182

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   ggaaaatggcttcaacaaat 198
             ||||||||||||||||||||
Sbjct: 36815 ggaaaatggcttcaacaaat 36834
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>gb|AC124741.5| Mus musculus BAC clone RP23-357D17 from chromosome 3, complete sequence
          Length = 220887

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 288    cacacagccaccacgagcagtgcc 311
              |||||||||| |||||||||||||
Sbjct: 175814 cacacagccagcacgagcagtgcc 175837
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>gb|AC110255.10| Mus musculus, clone RP23-274K7, complete sequence
          Length = 170587

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    atatttaatccagttgtgcc 398
              ||||||||||||||||||||
Sbjct: 151474 atatttaatccagttgtgcc 151493
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>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05,
             complete sequence
          Length = 158601

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   aagttctagcttgttagcca 133
             ||||||||||||||||||||
Sbjct: 12773 aagttctagcttgttagcca 12754
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>emb|CR933104.2| Medicago truncatula chromosome 5 clone mth2-25b3, COMPLETE SEQUENCE
          Length = 117135

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    gttgaaaaaattgttctaat 113
             ||||||||||||||||||||
Sbjct: 18587 gttgaaaaaattgttctaat 18606
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>gb|BC094228.1| Mus musculus leucine-rich repeats and immunoglobulin-like domains 2,
            mRNA (cDNA clone MGC:106698 IMAGE:30362610), complete cds
          Length = 7071

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 288  cacacagccaccacgagcagtgcc 311
            |||||||||| |||||||||||||
Sbjct: 4930 cacacagccagcacgagcagtgcc 4907
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>gb|AC012014.20| Homo sapiens 3 BAC RP11-255N4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 199523

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    agaaacactaataacagggt 168
              ||||||||||||||||||||
Sbjct: 180635 agaaacactaataacagggt 180616
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>dbj|AK033684.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched
           library, clone:9130219J06 product:unclassifiable, full
           insert sequence
          Length = 2767

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 288 cacacagccaccacgagcagtgcc 311
           |||||||||| |||||||||||||
Sbjct: 648 cacacagccagcacgagcagtgcc 625
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 114      aagttctagcttgttagcca 133
                ||||||||||||||||||||
Sbjct: 25526577 aagttctagcttgttagcca 25526558
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>dbj|AK173030.1| Mus musculus mRNA for mKIAA0806 protein
          Length = 5975

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 288  cacacagccaccacgagcagtgcc 311
            |||||||||| |||||||||||||
Sbjct: 3868 cacacagccagcacgagcagtgcc 3845
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>ref|NM_001025067.1| Mus musculus leucine-rich repeats and immunoglobulin-like domains 2
            (Lrig2), mRNA
          Length = 7134

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 288  cacacagccaccacgagcagtgcc 311
            |||||||||| |||||||||||||
Sbjct: 4993 cacacagccagcacgagcagtgcc 4970
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>emb|BX323067.11| Zebrafish DNA sequence from clone CH211-277B21 in linkage group 24,
              complete sequence
          Length = 152092

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    aattgttctaataagttcta 121
              ||||||||||||||||||||
Sbjct: 136899 aattgttctaataagttcta 136880
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>gb|AC146300.4| Mus musculus BAC clone RP23-38L11 from 3, complete sequence
          Length = 261825

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 288    cacacagccaccacgagcagtgcc 311
              |||||||||| |||||||||||||
Sbjct: 204342 cacacagccagcacgagcagtgcc 204319


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,292,058
Number of Sequences: 3902068
Number of extensions: 3292058
Number of successful extensions: 59606
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59521
Number of HSP's gapped (non-prelim): 85
length of query: 400
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 378
effective length of database: 17,147,199,772
effective search space: 6481641513816
effective search space used: 6481641513816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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