ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags32p07 |
|---|---|
| Clone Library Name | barley_pub |
>Y4844_ARATH (O49453) Protein At4g28440| Length = 153 Score = 92.8 bits (229), Expect = 3e-19 Identities = 45/65 (69%), Positives = 52/65 (80%) Frame = -3 Query: 420 RNDQIEMLKPGNTVIFRNARIDMFKDTMRLAVDKWGRIEVVEEPAGFKVNEDNNVSKVEY 241 RNDQ++++KPG TVI RN+RIDMFK TMRL VDKWGRIE A F V EDNN+S VEY Sbjct: 86 RNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEAT-GAASFTVKEDNNLSLVEY 144 Query: 240 ELVNV 226 EL+NV Sbjct: 145 ELINV 149
>MSH2_ARATH (O24617) DNA mismatch repair protein MSH2 (AtMsh2)| Length = 937 Score = 33.1 bits (74), Expect = 0.27 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = -1 Query: 146 VGSSSRFASLSWNALLVVVKKASAGRKAGLFGFMDGSCSVSVGRR 12 +G R S + AL V+ K A + LFG M+ +C+ +G+R Sbjct: 290 IGGFMRLDSAAMRALNVMESKTDANKNFSLFGLMNRTCTAGMGKR 334
>YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in chromosome I| Length = 536 Score = 32.3 bits (72), Expect = 0.46 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Frame = +2 Query: 227 TFTSSYSTFDTLLSSFTLK--PAGSSTTSIRPHLSTASLIVSLNMSILALRKITVLPGFS 400 +FT++ S+ DT LSS PA SS+ + LS++S+I S + S+L+ T + S Sbjct: 2 SFTNNTSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSS 61 Query: 401 IS 406 S Sbjct: 62 SS 63
>DHB2_MOUSE (P51658) Estradiol 17-beta-dehydrogenase 2 (EC 1.1.1.62)| (17-beta-HSD 2) (17-beta-hydroxysteroid dehydrogenase 2) Length = 381 Score = 31.2 bits (69), Expect = 1.0 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -3 Query: 366 ARIDMFKDTMRLAVDKWGRIEVVEEPAGFKVN 271 A + MF +R +DKWG V +P GFK N Sbjct: 238 AALTMFSTIIRQELDKWGVKVVTIKPGGFKTN 269
>COAT_CNV (P15183) Coat protein| Length = 380 Score = 30.8 bits (68), Expect = 1.4 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 6/59 (10%) Frame = +2 Query: 224 GTFTSSYSTFDTLLSSFTLKPAGSS------TTSIRPHLSTASLIVSLNMSILALRKIT 382 G T S S T+ SSF++ AGSS T + +LS + L + N + A+R IT Sbjct: 315 GGLTPSISGGGTINSSFSVSTAGSSAYVANITIRVNANLSLSGLTGATNAQLFAVRAIT 373
>GATB_MOUSE (Q99JT1) Probable glutamyl-tRNA(Gln) amidotransferase subunit B,| mitochondrial precursor (EC 6.3.5.-) (Glu-ADT subunit B) (Cytochrome oxidase assembly factor PET112 homolog) Length = 557 Score = 30.8 bits (68), Expect = 1.4 Identities = 22/90 (24%), Positives = 40/90 (44%) Frame = +2 Query: 122 KRTYYCYPLPPKIYVHSQREPVLSTAHLRSCFFGGTFTSSYSTFDTLLSSFTLKPAGSST 301 ++ Y+ LP + QR P+ + HL C + G S +T + L+ S Sbjct: 138 RKHYFYSDLPAGYQITQQRLPIAANGHLTYCIYLGKKPSQVTTKTVRIKQIQLEQ--DSG 195 Query: 302 TSIRPHLSTASLIVSLNMSILALRKITVLP 391 S+ L + +LI LN + + L ++ + P Sbjct: 196 KSLHDDLRSQTLI-DLNRAGIGLLEVVLEP 224
>YAB4_ARATH (Q9LDT3) Axial regulator YABBY4 (Protein INNER NO OUTER)| Length = 231 Score = 30.0 bits (66), Expect = 2.3 Identities = 13/23 (56%), Positives = 20/23 (86%) Frame = -3 Query: 273 NEDNNVSKVEYELVNVPPKKQER 205 NED +VS+V Y++VN PP+K++R Sbjct: 116 NEDEDVSRV-YQVVNKPPEKRQR 137
>DHB2_HUMAN (P37059) Estradiol 17-beta-dehydrogenase 2 (EC 1.1.1.62)| (17-beta-HSD 2) (Microsomal 17-beta-hydroxysteroid dehydrogenase) (20 alpha-hydroxysteroid dehydrogenase) (20-alpha-HSD) (E2DH) Length = 387 Score = 30.0 bits (66), Expect = 2.3 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Frame = -3 Query: 366 ARIDMFKDTMRLAVDKWGRIEVVEEPAGFKVN---EDNNVSKVEYELV-NVPPKKQE 208 A + MF MRL + KWG +P GF N + K+E +++ ++P + QE Sbjct: 237 AAVTMFSSVMRLELSKWGIKVASIQPGGFLTNIAGTSDKWEKLEKDILDHLPAEVQE 293
>SIA7A_MOUSE (Q9QZ39) Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase| 1 (EC 2.4.99.3) (GalNAc alpha-2,6-sialyltransferase I) (ST6GalNAc I) (Sialyltransferase 7A) Length = 526 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = -3 Query: 360 IDMFKDTMRLAVDKWGRIEVVEEPAGFKVNEDNNVSKVEYELVNVPPKKQER 205 I +F D+ R +W R+E P GF + N S V+ + PP +Q++ Sbjct: 229 ITLFLDSGRFTQSEWNRLEHFAPPFGFM---ELNQSLVQKVVTRFPPVRQQQ 277
>TEGU_SHV21 (Q01056) Probable large tegument protein| Length = 2469 Score = 29.6 bits (65), Expect = 3.0 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Frame = +1 Query: 19 PTDTEHDPSINPKRPAFLPAEAFFTTTNSAFQDNEANLLLLPTAS----QNLCPQP 174 PT EHD SI+ K P F + TNS + ++ N+ L ++ +++ PQP Sbjct: 2086 PTQEEHDQSISSKSPTFKIEHDY--NTNSVYNNHINNINLTNNSTYHQYKDVLPQP 2139
>PGDH_HUMAN (P15428) 15-hydroxyprostaglandin dehydrogenase [NAD+] (EC| 1.1.1.141) (PGDH) (Prostaglandin dehydrogenase 1) Length = 266 Score = 29.3 bits (64), Expect = 3.9 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = -3 Query: 405 EMLKPGNTVIFRNARIDM--FKDTMRLAVDKWGRIEVVEEPAGFKVNEDNNVSKVEYELV 232 E +P T+ + D +DT R VD +GR++++ AG NE N ++ LV Sbjct: 51 EQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN-NEKNWEKTLQINLV 109 Query: 231 NV 226 +V Sbjct: 110 SV 111
>PGDH_MACFA (Q8MJY8) 15-hydroxyprostaglandin dehydrogenase [NAD+] (EC| 1.1.1.141) (PGDH) (Prostaglandin dehydrogenase 1) Length = 266 Score = 28.9 bits (63), Expect = 5.1 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = -3 Query: 405 EMLKPGNTVIFRNARIDM--FKDTMRLAVDKWGRIEVVEEPAGFKVNEDNNVSKVEYELV 232 E +P T+ + D +DT R VD +GR++++ AG NE N ++ LV Sbjct: 51 EKFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN-NEKNWEKTLQINLV 109 Query: 231 NV 226 +V Sbjct: 110 SV 111
>GUAA_MYCPE (Q8EWS9) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 511 Score = 28.9 bits (63), Expect = 5.1 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = -3 Query: 345 DTMRLAVDKWGRI--EVVEEPAGFKVNEDNNVSKVEYELVNVPP 220 D+M KW +I E +E+ + N+ N+S+V Y++ N PP Sbjct: 462 DSMDAMSAKWYKIPLEHLEKISSIICNKVKNISRVVYDITNKPP 505
>BEM3_YEAST (P32873) GTPase-activating protein BEM3 (Bud emergence protein 3)| Length = 1128 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +2 Query: 224 GTFTSSYSTFDTLLSSFTLKPAGSSTTSIRPHLSTASLIVSLNMSI 361 G S +ST L++F+ P GS T RPH S+ S + S+ S+ Sbjct: 456 GETASIHST--NTLNTFSSTPQGSLKTLRRPHASSVSTVKSVAQSL 499
>FPRP_RAT (Q62786) Prostaglandin F2 receptor negative regulator precursor| (Prostaglandin F2-alpha receptor regulatory protein) (Prostaglandin F2-alpha receptor-associated protein) (CD315 antigen) Length = 879 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = +1 Query: 283 AGRLLHHLDPAPLVHRQPHRVLEHVD 360 A +L LD LVH PH L HVD Sbjct: 327 ASHMLARLDRDSLVHSSPHVALSHVD 352
>FPRP_MOUSE (Q9WV91) Prostaglandin F2 receptor negative regulator precursor| (Prostaglandin F2-alpha receptor regulatory protein) (Prostaglandin F2-alpha receptor-associated protein) (CD315 antigen) Length = 879 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = +1 Query: 283 AGRLLHHLDPAPLVHRQPHRVLEHVD 360 A +L LD LVH PH L HVD Sbjct: 327 ASHMLARLDRDSLVHSSPHVALSHVD 352
>FPRP_HUMAN (Q9P2B2) Prostaglandin F2 receptor negative regulator precursor| (Prostaglandin F2-alpha receptor regulatory protein) (Prostaglandin F2-alpha receptor-associated protein) (CD9 partner 1) (CD9P-1) (CD315 antigen) Length = 879 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +1 Query: 289 RLLHHLDPAPLVHRQPHRVLEHVD 360 R+L LD LVH PH L HVD Sbjct: 329 RVLARLDRDSLVHSSPHVALSHVD 352
>MSH2_MAIZE (Q9XGC9) DNA mismatch repair protein MSH2 (MUS1)| Length = 942 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -1 Query: 131 RFASLSWNALLVVVKKASAGRKAGLFGFMDGSCSVSVGRR 12 R S + AL + K + LFG M+ +C+V +G+R Sbjct: 297 RLDSAAVRALNIAEGKTDVNKNFSLFGLMNRTCTVGMGKR 336
>DHB2_RAT (Q62730) Estradiol 17-beta-dehydrogenase 2 (EC 1.1.1.62)| (17-beta-HSD 2) (17-beta-hydroxysteroid dehydrogenase 2) Length = 381 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Frame = -3 Query: 366 ARIDMFKDTMRLAVDKWGRIEVVEEPAGFKVN---EDNNVSKVEYELVN 229 A I MF +R + KWG V P GF+ N ++ K+E E+++ Sbjct: 238 AAISMFSAVIRQELAKWGVKVVTIHPGGFQTNIVGSQDSWDKMEKEILD 286
>FABG5_BRANA (Q93X68) 3-oxoacyl-[acyl-carrier-protein] reductase 5, chloroplast| precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase 5) (Fragment) Length = 317 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -3 Query: 339 MRLAVDKWGRIEVVEEPAG 283 M+ AVDKWG I+VV AG Sbjct: 143 MKTAVDKWGTIDVVVNNAG 161
>SOSD1_CHICK (Q6VYA3) Sclerostin domain-containing protein 1 precursor| (Wnt-signaling modulator) Length = 206 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%) Frame = +2 Query: 185 VLSTAHLRSCFFGGTFTSSYSTFDT----LLSSFTLKPAGSSTTS 307 +LS H TFT SYS F +L S +KPA +S +S Sbjct: 2 LLSAIHFYGLLLACTFTRSYSAFKNDATEILYSHVVKPAPASPSS 46
>GUAA_IDILO (Q5QWW5) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 525 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = -3 Query: 345 DTMRLAVDKWGRI--EVVEEPAGFKVNEDNNVSKVEYELVNVPP 220 +T+ +W + E++E+ + +NE N +S+V Y++ PP Sbjct: 476 ETIDFMTARWAHLPYELLEKVSNRIINEVNGISRVTYDISGKPP 519
>C4D20_DROME (Q9W011) Probable cytochrome P450 4d20 (EC 1.14.-.-) (CYPIVD20)| Length = 510 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/50 (38%), Positives = 25/50 (50%) Frame = +2 Query: 230 FTSSYSTFDTLLSSFTLKPAGSSTTSIRPHLSTASLIVSLNMSILALRKI 379 +T F+T+LSS TL G +RP L+ L+VS A RKI Sbjct: 82 YTKDLQYFETILSSTTLLEKGQLYEYLRPFLND-GLLVSTGRKWHARRKI 130
>FABG4_BRANA (Q949M2) 3-oxoacyl-[acyl-carrier-protein] reductase 4 (EC| 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase 4) (Fragment) Length = 254 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -3 Query: 339 MRLAVDKWGRIEVVEEPAG 283 M+ AVDKWG I+VV AG Sbjct: 83 MKTAVDKWGTIDVVVNNAG 101 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,293,482 Number of Sequences: 219361 Number of extensions: 1097542 Number of successful extensions: 3960 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3835 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3958 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
