ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33e13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101506.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 230 4e-57
3emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 230 4e-57
4emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4,... 230 4e-57
5ref|XM_474410.1| Oryza sativa (japonica cultivar-group), predic... 226 6e-56
6gb|AY112335.1| Zea mays CL33679_1 mRNA sequence 56 1e-04
7ref|XM_753206.1| Ustilago maydis 521 hypothetical protein (UM021... 44 0.49
8emb|AL390801.4|CNS06C7S Human chromosome 14 DNA sequence BAC R-7... 44 0.49
9gb|AC148246.3| Saimiri boliviensis boliviensis clone CH254-471K1... 44 0.49
10dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 42 1.9
11gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
12ref|XM_420307.1| PREDICTED: Gallus gallus similar to putative co... 40 7.7
13gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 40 7.7
14emb|CT010480.10| Mouse DNA sequence from clone RP23-313E11 on ch... 40 7.7
15gb|AY123429.1|AY123426S04 Papio anubis anubis neurofibromatosis ... 40 7.7
16emb|Z49866.2|HSN73A10 Human DNA sequence from clone LL22NC03-73A... 40 7.7
17ref|XM_499718.1| Yarrowia lipolytica CLIB122, YALI0A03135g predi... 40 7.7
18emb|AJ969410.1| Maize stripe virus segment 3, complete sequence,... 40 7.7
19gb|AC090396.9| Homo sapiens chromosome 18, clone RP11-868G15, co... 40 7.7
20emb|BX666061.27| Mouse DNA sequence from clone RP24-427A22 on ch... 40 7.7
21emb|AL824709.35| Mouse DNA sequence from clone RP23-388P16 on ch... 40 7.7
22gb|AC087518.5| Homo sapiens chromosome , clone RP11-359E19, comp... 40 7.7
23gb|AC114756.4| Homo sapiens BAC clone RP11-284M14 from 4, comple... 40 7.7
24gb|AC087559.69| Mus musculus strain C57BL/6J clone rp23-355o11 m... 40 7.7
25emb|AL935334.14| Zebrafish DNA sequence from clone CH211-199B20 ... 40 7.7
26gb|AC007991.7|AC007991 Homo sapiens, clone RP11-44K6, complete s... 40 7.7
27emb|BX248233.7| Zebrafish DNA sequence from clone CH211-125N11 i... 40 7.7
28dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
29dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
30gb|AC098932.3| Homo sapiens chromosome 1 clone RP11-480D2, compl... 40 7.7
31dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
32dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
33gb|AC090655.63| Mus musculus strain C57BL/6J clone rp23-382i12 m... 40 7.7
34dbj|AP003970.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.7
35dbj|AP001257.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 7.7
36emb|AL772334.16| Mouse DNA sequence from clone RP23-411B7 on chr... 40 7.7
37gb|U19104.1|YSCLL3502 Saccharomyces cerevisiae chromosome XII co... 40 7.7
38emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 7.7
39gb|M57426.1|MZSRNA3 Maize stripe virus RNA 3 nonstructural prote... 40 7.7 
>dbj|AK101506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044N06, full
            insert sequence
          Length = 2325

 Score =  232 bits (117), Expect = 1e-57
 Identities = 234/268 (87%), Gaps = 4/268 (1%)
 Strand = Plus / Minus

                                                                        
Query: 236  tcatattcagcgtccactgctgctacttgtctcttgggcacaaccatccttgagagcatc 295
            |||||||||  |||||||||||||||||||||| |||||||||||||||||||  || ||
Sbjct: 1818 tcatattcaatgtccactgctgctacttgtctcatgggcacaaccatccttgattgcttc 1759

                                                                        
Query: 296  ttgagcttcattctccatgtctaaagaaagcaacgctgcagctngaaggtaaaatgcagt 355
            ||||||||||||||||||| ||||||||||||  || |||||  |||| |||||||||||
Sbjct: 1758 ttgagcttcattctccatgcctaaagaaagcagagcagcagcctgaagataaaatgcagt 1699

                                                                        
Query: 356  cggccatgtcggagatattactagtgcctgcattgcatcactgagagcctgttctgccat 415
             |||||||| |||||||||||||| || ||||| |||||||||||||| ||||||||| |
Sbjct: 1698 tggccatgttggagatattactagcgcttgcatcgcatcactgagagcttgttctgcctt 1639

                                                                        
Query: 416  gtcatttcatcagatatgataaggcaacggcgggcataaatggagggggaaacccatcgg 475
            |||| ||||||||||||||  |||||||| || ||||||||||  || |||| ||||| |
Sbjct: 1638 gtca-ttcatcagatatga-caggcaacgccgcgcataaatggtcggagaaa-ccatc-g 1583

                                        
Query: 476  tgccgactttaatgaactgagagtaaca 503
            | || |||| |||||||||||| |||||
Sbjct: 1582 taccaacttcaatgaactgagaataaca 1555
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  230 bits (116), Expect = 4e-57
 Identities = 198/223 (88%), Gaps = 2/223 (0%)
 Strand = Plus / Minus

                                                                            
Query: 236      tcatattcagcgtccactgctgctacttgtctcttgggcacaaccatccttgagagcatc 295
                |||||||||  |||||||||||||||||||||| |||||||||||||||||||  || ||
Sbjct: 34983856 tcatattcaatgtccactgctgctacttgtctcatgggcacaaccatccttgattgcttc 34983797

                                                                            
Query: 296      ttgagcttcattctccatgtctaaagaaagcaacgctgcagctngaaggtaaaatgcagt 355
                ||||||||||||||||||| ||||||||||||  || |||||  |||| |||||||||||
Sbjct: 34983796 ttgagcttcattctccatgcctaaagaaagcagagcagcagcctgaagataaaatgcagt 34983737

                                                                            
Query: 356      cggccatgtcggagatattactagtgcctgcattgcatcactgagagcctgttctgccat 415
                 |||||||| |||||||||||||| || ||||| |||||||||||||| ||||||||| |
Sbjct: 34983736 tggccatgttggagatattactagcgcttgcatcgcatcactgagagcttgttctgcctt 34983677

                                                           
Query: 416      gtcatttcatcagatatgataaggcaacggcgggcataaatgg 458
                |||| ||||||||||||||  |||||||| || ||||||||||
Sbjct: 34983676 gtca-ttcatcagatatga-caggcaacgccgcgcataaatgg 34983636
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>emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0913C04, complete
             sequence
          Length = 94152

 Score =  230 bits (116), Expect = 4e-57
 Identities = 198/223 (88%), Gaps = 2/223 (0%)
 Strand = Plus / Minus

                                                                         
Query: 236   tcatattcagcgtccactgctgctacttgtctcttgggcacaaccatccttgagagcatc 295
             |||||||||  |||||||||||||||||||||| |||||||||||||||||||  || ||
Sbjct: 14025 tcatattcaatgtccactgctgctacttgtctcatgggcacaaccatccttgattgcttc 13966

                                                                         
Query: 296   ttgagcttcattctccatgtctaaagaaagcaacgctgcagctngaaggtaaaatgcagt 355
             ||||||||||||||||||| ||||||||||||  || |||||  |||| |||||||||||
Sbjct: 13965 ttgagcttcattctccatgcctaaagaaagcagagcagcagcctgaagataaaatgcagt 13906

                                                                         
Query: 356   cggccatgtcggagatattactagtgcctgcattgcatcactgagagcctgttctgccat 415
              |||||||| |||||||||||||| || ||||| |||||||||||||| ||||||||| |
Sbjct: 13905 tggccatgttggagatattactagcgcttgcatcgcatcactgagagcttgttctgcctt 13846

                                                        
Query: 416   gtcatttcatcagatatgataaggcaacggcgggcataaatgg 458
             |||| ||||||||||||||  |||||||| || ||||||||||
Sbjct: 13845 gtca-ttcatcagatatga-caggcaacgccgcgcataaatgg 13805
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>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09,
             complete sequence
          Length = 145391

 Score =  230 bits (116), Expect = 4e-57
 Identities = 198/223 (88%), Gaps = 2/223 (0%)
 Strand = Plus / Minus

                                                                         
Query: 236   tcatattcagcgtccactgctgctacttgtctcttgggcacaaccatccttgagagcatc 295
             |||||||||  |||||||||||||||||||||| |||||||||||||||||||  || ||
Sbjct: 42906 tcatattcaatgtccactgctgctacttgtctcatgggcacaaccatccttgattgcttc 42847

                                                                         
Query: 296   ttgagcttcattctccatgtctaaagaaagcaacgctgcagctngaaggtaaaatgcagt 355
             ||||||||||||||||||| ||||||||||||  || |||||  |||| |||||||||||
Sbjct: 42846 ttgagcttcattctccatgcctaaagaaagcagagcagcagcctgaagataaaatgcagt 42787

                                                                         
Query: 356   cggccatgtcggagatattactagtgcctgcattgcatcactgagagcctgttctgccat 415
              |||||||| |||||||||||||| || ||||| |||||||||||||| ||||||||| |
Sbjct: 42786 tggccatgttggagatattactagcgcttgcatcgcatcactgagagcttgttctgcctt 42727

                                                        
Query: 416   gtcatttcatcagatatgataaggcaacggcgggcataaatgg 458
             |||| ||||||||||||||  |||||||| || ||||||||||
Sbjct: 42726 gtca-ttcatcagatatga-caggcaacgccgcgcataaatgg 42686
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>ref|XM_474410.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1479

 Score =  226 bits (114), Expect = 6e-56
 Identities = 225/257 (87%), Gaps = 4/257 (1%)
 Strand = Plus / Minus

                                                                        
Query: 247  gtccactgctgctacttgtctcttgggcacaaccatccttgagagcatcttgagcttcat 306
            |||||||||||||||||||||| |||||||||||||||||||  || |||||||||||||
Sbjct: 1474 gtccactgctgctacttgtctcatgggcacaaccatccttgattgcttcttgagcttcat 1415

                                                                        
Query: 307  tctccatgtctaaagaaagcaacgctgcagctngaaggtaaaatgcagtcggccatgtcg 366
            |||||||| ||||||||||||  || |||||  |||| ||||||||||| |||||||| |
Sbjct: 1414 tctccatgcctaaagaaagcagagcagcagcctgaagataaaatgcagttggccatgttg 1355

                                                                        
Query: 367  gagatattactagtgcctgcattgcatcactgagagcctgttctgccatgtcatttcatc 426
            ||||||||||||| || ||||| |||||||||||||| ||||||||| ||||| ||||||
Sbjct: 1354 gagatattactagcgcttgcatcgcatcactgagagcttgttctgccttgtca-ttcatc 1296

                                                                        
Query: 427  agatatgataaggcaacggcgggcataaatggagggggaaacccatcggtgccgacttta 486
            ||||||||  |||||||| || ||||||||||  || |||| ||||| || || |||| |
Sbjct: 1295 agatatga-caggcaacgccgcgcataaatggtcggagaaa-ccatc-gtaccaacttca 1239

                             
Query: 487  atgaactgagagtaaca 503
            ||||||||||| |||||
Sbjct: 1238 atgaactgagaataaca 1222
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>gb|AY112335.1| Zea mays CL33679_1 mRNA sequence
          Length = 870

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 275 acaaccatccttgagagcatcttgagcttcattctccatg 314
           ||||||||||||||| || ||||| |||||||||||||||
Sbjct: 236 acaaccatccttgagtgcttcttgtgcttcattctccatg 197



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                            
Query: 421 ttcatcagatatgataaggcaacggcgggcataaatggagggggaaacc 469
           ||||||||||||||  |||||||| || ||||||||||  |||||||||
Sbjct: 91  ttcatcagatatga-caggcaacgtcgagcataaatggttggggaaacc 44
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>ref|XM_753206.1| Ustilago maydis 521 hypothetical protein (UM02152.1) partial mRNA
          Length = 1875

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 283  ccttgagagcatcttgagcttc 304
            ||||||||||||||||||||||
Sbjct: 1683 ccttgagagcatcttgagcttc 1662
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>emb|AL390801.4|CNS06C7S Human chromosome 14 DNA sequence BAC R-728G21 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166847

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 83     caaccaaaactatcaaaactga 104
              ||||||||||||||||||||||
Sbjct: 134550 caaccaaaactatcaaaactga 134571
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>gb|AC148246.3| Saimiri boliviensis boliviensis clone CH254-471K13, complete sequence
          Length = 177755

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 396    ctgagagcctgttctgccatgt 417
              ||||||||||||||||||||||
Sbjct: 169555 ctgagagcctgttctgccatgt 169534
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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 224     caagatatcagttcatattca 244
               |||||||||||||||||||||
Sbjct: 1995540 caagatatcagttcatattca 1995520
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>gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1653_D06,
             complete sequence
          Length = 71193

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 85    accaaaactatcaaaactgacata 108
             ||||||||||||||||| ||||||
Sbjct: 42455 accaaaactatcaaaaccgacata 42432
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>ref|XM_420307.1| PREDICTED: Gallus gallus similar to putative copper efflux ATPase
            (LOC422333), mRNA
          Length = 3237

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   gttcagaaatccttgggaca 84
            ||||||||||||||||||||
Sbjct: 2954 gttcagaaatccttgggaca 2973
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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 437    aggcaacggcgggcataaat 456
              ||||||||||||||||||||
Sbjct: 171376 aggcaacggcgggcataaat 171395
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>emb|CT010480.10| Mouse DNA sequence from clone RP23-313E11 on chromosome 13, complete
             sequence
          Length = 203636

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   gaggtactacaaatttacaa 173
             ||||||||||||||||||||
Sbjct: 66734 gaggtactacaaatttacaa 66753
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>gb|AY123429.1|AY123426S04 Papio anubis anubis neurofibromatosis type 2 region, section 4; and
             merlin (NF2) gene, exons 2 through 16 and complete cds
          Length = 100801

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 334   cagctngaaggtaaaatgcagtc 356
             ||||| |||||||||||||||||
Sbjct: 83251 cagcttgaaggtaaaatgcagtc 83273
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>emb|Z49866.2|HSN73A10 Human DNA sequence from clone LL22NC03-73A10 on chromosome 22 Contains
             GSSs, complete sequence
          Length = 33685

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 386   cattgcatcactgagagcct 405
             ||||||||||||||||||||
Sbjct: 32858 cattgcatcactgagagcct 32839
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>ref|XM_499718.1| Yarrowia lipolytica CLIB122, YALI0A03135g predicted mRNA
          Length = 1635

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 tggaattatgtgcattttct 220
           ||||||||||||||||||||
Sbjct: 957 tggaattatgtgcattttct 976
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>emb|AJ969410.1| Maize stripe virus segment 3, complete sequence, genomic RNA
          Length = 2360

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 414 atgtcatttcatcagatatg 433
           ||||||||||||||||||||
Sbjct: 599 atgtcatttcatcagatatg 618
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>gb|AC090396.9| Homo sapiens chromosome 18, clone RP11-868G15, complete sequence
          Length = 215375

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 205   attatgtgcattttctagacaaga 228
             ||||||| ||||||||||||||||
Sbjct: 93247 attatgtacattttctagacaaga 93270
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>emb|BX666061.27| Mouse DNA sequence from clone RP24-427A22 on chromosome 4, complete
              sequence
          Length = 208482

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    gtgcattttctagacaagat 229
              ||||||||||||||||||||
Sbjct: 167318 gtgcattttctagacaagat 167299
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>emb|AL824709.35| Mouse DNA sequence from clone RP23-388P16 on chromosome 4, complete
             sequence
          Length = 211610

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   gtgcattttctagacaagat 229
             ||||||||||||||||||||
Sbjct: 77559 gtgcattttctagacaagat 77540
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>gb|AC087518.5| Homo sapiens chromosome , clone RP11-359E19, complete sequence
          Length = 168531

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  attctccatgtctaaagaaa 324
            ||||||||||||||||||||
Sbjct: 1525 attctccatgtctaaagaaa 1506
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>gb|AC114756.4| Homo sapiens BAC clone RP11-284M14 from 4, complete sequence
          Length = 85149

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 453   aaatggagggggaaacccat 472
             ||||||||||||||||||||
Sbjct: 80237 aaatggagggggaaacccat 80218
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>gb|AC087559.69| Mus musculus strain C57BL/6J clone rp23-355o11 map 4, complete
            sequence
          Length = 227966

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 210  gtgcattttctagacaagat 229
            ||||||||||||||||||||
Sbjct: 9770 gtgcattttctagacaagat 9789
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>emb|AL935334.14| Zebrafish DNA sequence from clone CH211-199B20 in linkage group 14,
              complete sequence
          Length = 191828

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 164    aaatttacaataacaagatttggtaaaa 191
              ||||||| ||||| ||||||||||||||
Sbjct: 184572 aaatttaaaataaaaagatttggtaaaa 184599
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>gb|AC007991.7|AC007991 Homo sapiens, clone RP11-44K6, complete sequence
          Length = 149008

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   attctccatgtctaaagaaa 324
             ||||||||||||||||||||
Sbjct: 92762 attctccatgtctaaagaaa 92743
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>emb|BX248233.7| Zebrafish DNA sequence from clone CH211-125N11 in linkage group 10,
              complete sequence
          Length = 157428

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    aatttacaataacaagattt 184
              ||||||||||||||||||||
Sbjct: 156642 aatttacaataacaagattt 156661
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 414      atgtcatttcatcagatatgataa 437
                |||||||||| |||||||||||||
Sbjct: 25834401 atgtcatttcttcagatatgataa 25834378
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 85       accaaaactatcaaaactgacata 108
                ||||||||||||||||| ||||||
Sbjct: 10825523 accaaaactatcaaaaccgacata 10825500
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>gb|AC098932.3| Homo sapiens chromosome 1 clone RP11-480D2, complete sequence
          Length = 186291

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     aacatgttcagaaatccttg 79
              ||||||||||||||||||||
Sbjct: 154436 aacatgttcagaaatccttg 154455
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>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1003_A09
          Length = 150755

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 414   atgtcatttcatcagatatgataa 437
             |||||||||| |||||||||||||
Sbjct: 20188 atgtcatttcttcagatatgataa 20165
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>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0689E12
          Length = 147516

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 414    atgtcatttcatcagatatgataa 437
              |||||||||| |||||||||||||
Sbjct: 106612 atgtcatttcttcagatatgataa 106589
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>gb|AC090655.63| Mus musculus strain C57BL/6J clone rp23-382i12 map 4, complete sequence
          Length = 264975

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    gtgcattttctagacaagat 229
              ||||||||||||||||||||
Sbjct: 246623 gtgcattttctagacaagat 246642



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   gtgcattttctagacaagat 229
             ||||||||||||||||||||
Sbjct: 67487 gtgcattttctagacaagat 67468
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>dbj|AP003970.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-790I14, complete
             sequence
          Length = 168594

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   gcctgttctgccatgtcatt 421
             ||||||||||||||||||||
Sbjct: 33037 gcctgttctgccatgtcatt 33056
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>dbj|AP001257.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-100I11, complete
             sequences
          Length = 146823

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   gcctgttctgccatgtcatt 421
             ||||||||||||||||||||
Sbjct: 94089 gcctgttctgccatgtcatt 94108
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>emb|AL772334.16| Mouse DNA sequence from clone RP23-411B7 on chromosome 4, complete
             sequence
          Length = 150841

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   gtgcattttctagacaagat 229
             ||||||||||||||||||||
Sbjct: 67986 gtgcattttctagacaagat 68005
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>gb|U19104.1|YSCLL3502 Saccharomyces cerevisiae chromosome XII cosmid L3502
          Length = 22761

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 421   ttcatcagatatgataaggc 440
             ||||||||||||||||||||
Sbjct: 21001 ttcatcagatatgataaggc 21020
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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    tggaattatgtgcattttct 220
              ||||||||||||||||||||
Sbjct: 365596 tggaattatgtgcattttct 365615
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>gb|M57426.1|MZSRNA3 Maize stripe virus RNA 3 nonstructural protein (NS-3) and
           nucleocapsid protein (N) genes, complete cds
          Length = 2357

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 414 atgtcatttcatcagatatg 433
           ||||||||||||||||||||
Sbjct: 599 atgtcatttcatcagatatg 618


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,484,837
Number of Sequences: 3902068
Number of extensions: 5484837
Number of successful extensions: 97324
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97122
Number of HSP's gapped (non-prelim): 195
length of query: 564
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 541
effective length of database: 17,143,297,704
effective search space: 9274524057864
effective search space used: 9274524057864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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