ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32p01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192784.1| Oryza sativa (japonica cultivar-group), predic... 272 1e-69
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
3dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
4gb|AY105809.1| Zea mays PCO090443 mRNA sequence 78 3e-11
5ref|NM_192785.1| Oryza sativa (japonica cultivar-group), predic... 66 1e-07
6dbj|AK069226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
7dbj|AK061211.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
8ref|NM_189610.2| Oryza sativa (japonica cultivar-group), mRNA 44 0.43
9emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 44 0.43
10dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.43
11dbj|AK110554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.43
12dbj|AK104360.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.43
13dbj|AK098922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.43
14dbj|AK065320.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.43
15dbj|AK065131.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.43
16dbj|AK061343.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.43
17ref|NM_189533.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
18gb|AY663412.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.7
19gb|AY663410.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.7
20gb|AY663408.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.7
21gb|AY663407.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.7
22gb|AY663405.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.7
23gb|AY663404.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.7
24gb|AY663402.1| Gorilla gorilla voucher Coriell Cell Repository D... 42 1.7
25gb|AY663399.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.7
26gb|AY663397.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.7
27gb|AY663396.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.7
28gb|AY663394.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.7
29emb|CR854861.1| Human DNA sequence from clone XX-BQB97F8_109B10_... 42 1.7
30emb|Z84489.1|HS93N13 Human DNA sequence from clone RP1-93N13 on ... 42 1.7
31emb|AL662842.3| Human DNA sequence from clone XXbac-181I15 on ch... 42 1.7
32emb|CR753901.9| Human DNA sequence from clone DADB-166N19 on chr... 42 1.7
33emb|CR753835.3| Human DNA sequence from clone DAMA-265D9 on chro... 42 1.7
34emb|CR753309.2| Human DNA sequence from clone DADB-102D14 on chr... 42 1.7
35gb|AC154217.2| Mus musculus BAC clone RP24-357L19 from chromosom... 42 1.7
36gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.7
37dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
38dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
39emb|AJ132431.1|GPU132431 Gibberella pulicaris acl1 gene, exons 1... 42 1.7
40ref|NM_189664.1| Oryza sativa (japonica cultivar-group), predic... 40 6.6
41gb|AC142119.2| Homo sapiens fosmid clone XXFOS-80464F2 from 2, c... 40 6.6
42emb|CR932703.1|CNS0KYEU Paramecium tetraurelia, Small GTPase rab... 40 6.6
43emb|CR812847.5| Zebrafish DNA sequence from clone DKEY-9I15 in l... 40 6.6
44gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence 40 6.6
45emb|BX927151.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 6.6
46emb|BX890620.9| Zebrafish DNA sequence from clone DKEY-48C14 in ... 40 6.6
47gb|AC125610.4| Homo sapiens 3 BAC RP11-189B7 (Roswell Park Cance... 40 6.6
48gb|AC156569.3| Mus musculus BAC clone RP23-315K10 from chromosom... 40 6.6
49dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 6.6
50dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
51dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.6
52emb|BX005228.7| Zebrafish DNA sequence from clone CH211-163M17 i... 40 6.6
53dbj|AK109404.2| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
54emb|Y00546.1|CGHOMTHR Corynebacterium glutamicum hom-thrB genes ... 40 6.6
55emb|Y00476.1|BLTHRA B. lactofermentum thr A gene 40 6.6
56dbj|AK104471.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
57dbj|AK104183.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
58dbj|AK100363.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
59dbj|AK061466.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
60dbj|AK060964.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
61gb|AY110165.1| Zea mays CL20454_1 mRNA sequence 40 6.6
62emb|CT030714.5| Mouse DNA sequence from clone RP23-223P19 on chr... 40 6.6
63emb|AL929503.4| Zebrafish DNA sequence from clone CH211-158I6, c... 40 6.6 
>ref|NM_192784.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1341

 Score =  272 bits (137), Expect = 1e-69
 Identities = 218/245 (88%)
 Strand = Plus / Minus

                                                                        
Query: 232  acttggcaagctcgtcggcgaacacagccgcgtgtggctcctccacgcaacggagcatca 291
            ||||||| ||||||||||||||  | || ||||| |||||||| ||||| |||||||| |
Sbjct: 1333 acttggcgagctcgtcggcgaaggcggcggcgtgcggctcctcgacgcagcggagcatga 1274

                                                                        
Query: 292  gtcggatcccacgcttgggtgccggtggcttgaggtagatcaccgacgcgacaatgttga 351
            | ||||| || |||||||| ||||| |||  ||||||||||||||||||||| |||||||
Sbjct: 1273 ggcggatgccgcgcttgggcgccggcggccggaggtagatcaccgacgcgacgatgttga 1214

                                                                        
Query: 352  catcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtccacctcgttga 411
            | ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 1213 cgtcgtcgttgagcgtgaacacgtacccgggctcgccgaacccgtagtccacctcgttga 1154

                                                                        
Query: 412  agccgacgcggctccagtccgacaccgtcacggtgccgtaatccagcggcacattgtagt 471
            | || |||||||||||||||||||||||||| || ||||| ||||||||||| | |||||
Sbjct: 1153 accccacgcggctccagtccgacaccgtcaccgtcccgtagtccagcggcacgtcgtagt 1094

                 
Query: 472  ggtcg 476
            |||||
Sbjct: 1093 ggtcg 1089
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  272 bits (137), Expect = 1e-69
 Identities = 218/245 (88%)
 Strand = Plus / Plus

                                                                            
Query: 232      acttggcaagctcgtcggcgaacacagccgcgtgtggctcctccacgcaacggagcatca 291
                ||||||| ||||||||||||||  | || ||||| |||||||| ||||| |||||||| |
Sbjct: 24391412 acttggcgagctcgtcggcgaaggcggcggcgtgcggctcctcgacgcagcggagcatga 24391471

                                                                            
Query: 292      gtcggatcccacgcttgggtgccggtggcttgaggtagatcaccgacgcgacaatgttga 351
                | ||||| || |||||||| ||||| |||  ||||||||||||||||||||| |||||||
Sbjct: 24391472 ggcggatgccgcgcttgggcgccggcggccggaggtagatcaccgacgcgacgatgttga 24391531

                                                                            
Query: 352      catcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtccacctcgttga 411
                | ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 24391532 cgtcgtcgttgagcgtgaacacgtacccgggctcgccgaacccgtagtccacctcgttga 24391591

                                                                            
Query: 412      agccgacgcggctccagtccgacaccgtcacggtgccgtaatccagcggcacattgtagt 471
                | || |||||||||||||||||||||||||| || ||||| ||||||||||| | |||||
Sbjct: 24391592 accccacgcggctccagtccgacaccgtcaccgtcccgtagtccagcggcacgtcgtagt 24391651

                     
Query: 472      ggtcg 476
                |||||
Sbjct: 24391652 ggtcg 24391656



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 120/149 (80%)
 Strand = Plus / Plus

                                                                            
Query: 342      acaatgttgacatcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtcc 401
                |||||||| ||||| || || || |||||||| || |  |||||||| || |||||||||
Sbjct: 24394033 acaatgttcacatcatcattcagggtgaacacatagctcggctcgccaaacccgtagtcc 24394092

                                                                            
Query: 402      acctcgttgaagccgacgcggctccagtccgacaccgtcacggtgccgtaatccagcggc 461
                ||||||||||| |||||  ||||||| || |  ||    |  |||||||||||||||| |
Sbjct: 24394093 acctcgttgaacccgacatggctccaatctgtgacgactagtgtgccgtaatccagcgac 24394152

                                             
Query: 462      acattgtagtggtcgtccttggcgccacc 490
                |||||||| ||||  |||||||| |||||
Sbjct: 24394153 acattgtaatggttctccttggcaccacc 24394181



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 386     gccgaagccgtagtccacctcg 407
               ||||||||||||||||||||||
Sbjct: 4531441 gccgaagccgtagtccacctcg 4531420



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                            
Query: 393     ccgtagtccacctcgttgaagccgacgcggctccagtccgacacc 437
               |||||||||||||||  |||||| |  ||| ||||||||||||||
Sbjct: 4109856 ccgtagtccacctcggcgaagcccagccgggtccagtccgacacc 4109900



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 197     cggccacggccaagaagcag 216
               ||||||||||||||||||||
Sbjct: 4872532 cggccacggccaagaagcag 4872551
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>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0410E01
          Length = 166753

 Score =  272 bits (137), Expect = 1e-69
 Identities = 218/245 (88%)
 Strand = Plus / Plus

                                                                          
Query: 232    acttggcaagctcgtcggcgaacacagccgcgtgtggctcctccacgcaacggagcatca 291
              ||||||| ||||||||||||||  | || ||||| |||||||| ||||| |||||||| |
Sbjct: 137316 acttggcgagctcgtcggcgaaggcggcggcgtgcggctcctcgacgcagcggagcatga 137375

                                                                          
Query: 292    gtcggatcccacgcttgggtgccggtggcttgaggtagatcaccgacgcgacaatgttga 351
              | ||||| || |||||||| ||||| |||  ||||||||||||||||||||| |||||||
Sbjct: 137376 ggcggatgccgcgcttgggcgccggcggccggaggtagatcaccgacgcgacgatgttga 137435

                                                                          
Query: 352    catcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtccacctcgttga 411
              | ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 137436 cgtcgtcgttgagcgtgaacacgtacccgggctcgccgaacccgtagtccacctcgttga 137495

                                                                          
Query: 412    agccgacgcggctccagtccgacaccgtcacggtgccgtaatccagcggcacattgtagt 471
              | || |||||||||||||||||||||||||| || ||||| ||||||||||| | |||||
Sbjct: 137496 accccacgcggctccagtccgacaccgtcaccgtcccgtagtccagcggcacgtcgtagt 137555

                   
Query: 472    ggtcg 476
              |||||
Sbjct: 137556 ggtcg 137560



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 120/149 (80%)
 Strand = Plus / Plus

                                                                          
Query: 342    acaatgttgacatcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtcc 401
              |||||||| ||||| || || || |||||||| || |  |||||||| || |||||||||
Sbjct: 139937 acaatgttcacatcatcattcagggtgaacacatagctcggctcgccaaacccgtagtcc 139996

                                                                          
Query: 402    acctcgttgaagccgacgcggctccagtccgacaccgtcacggtgccgtaatccagcggc 461
              ||||||||||| |||||  ||||||| || |  ||    |  |||||||||||||||| |
Sbjct: 139997 acctcgttgaacccgacatggctccaatctgtgacgactagtgtgccgtaatccagcgac 140056

                                           
Query: 462    acattgtagtggtcgtccttggcgccacc 490
              |||||||| ||||  |||||||| |||||
Sbjct: 140057 acattgtaatggttctccttggcaccacc 140085
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>gb|AY105809.1| Zea mays PCO090443 mRNA sequence
          Length = 1086

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 117/143 (81%)
 Strand = Plus / Minus

                                                                       
Query: 345 atgttgacatcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtccacc 404
           ||||| || ||||||||||| ||||||||||| |  ||||| ||||| |||||||| || 
Sbjct: 783 atgttcacgtcgtcgttgagggtgaacacgtagcttggctcaccgaacccgtagtcaacg 724

                                                                       
Query: 405 tcgttgaagccgacgcggctccagtccgacaccgtcacggtgccgtaatccagcggcaca 464
           |||||||| || ||  |||||||||| | |||    | ||||||||| ||||||| ||| 
Sbjct: 723 tcgttgaaacccacatggctccagtcggtcacgacgagggtgccgtagtccagcgacacg 664

                                  
Query: 465 ttgtagtggtcgtccttggcgcc 487
           ||||||||||  |||||||||||
Sbjct: 663 ttgtagtggttctccttggcgcc 641
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>ref|NM_192785.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1275

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 120/149 (80%)
 Strand = Plus / Minus

                                                                        
Query: 342  acaatgttgacatcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtcc 401
            |||||||| ||||| || || || |||||||| || |  |||||||| || |||||||||
Sbjct: 1157 acaatgttcacatcatcattcagggtgaacacatagctcggctcgccaaacccgtagtcc 1098

                                                                        
Query: 402  acctcgttgaagccgacgcggctccagtccgacaccgtcacggtgccgtaatccagcggc 461
            ||||||||||| |||||  ||||||| || |  ||    |  |||||||||||||||| |
Sbjct: 1097 acctcgttgaacccgacatggctccaatctgtgacgactagtgtgccgtaatccagcgac 1038

                                         
Query: 462  acattgtagtggtcgtccttggcgccacc 490
            |||||||| ||||  |||||||| |||||
Sbjct: 1037 acattgtaatggttctccttggcaccacc 1009
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>dbj|AK069226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014K19, full
            insert sequence
          Length = 1562

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 120/149 (80%)
 Strand = Plus / Minus

                                                                        
Query: 342  acaatgttgacatcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtcc 401
            |||||||| ||||| || || || |||||||| || |  |||||||| || |||||||||
Sbjct: 1232 acaatgttcacatcatcattcagggtgaacacatagctcggctcgccaaacccgtagtcc 1173

                                                                        
Query: 402  acctcgttgaagccgacgcggctccagtccgacaccgtcacggtgccgtaatccagcggc 461
            ||||||||||| |||||  ||||||| || |  ||    |  |||||||||||||||| |
Sbjct: 1172 acctcgttgaacccgacatggctccaatctgtgacgactagtgtgccgtaatccagcgac 1113

                                         
Query: 462  acattgtagtggtcgtccttggcgccacc 490
            |||||||| ||||  |||||||| |||||
Sbjct: 1112 acattgtaatggttctccttggcaccacc 1084
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>dbj|AK061211.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D05, full
            insert sequence
          Length = 1556

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 120/149 (80%)
 Strand = Plus / Minus

                                                                        
Query: 342  acaatgttgacatcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtcc 401
            |||||||| ||||| || || || |||||||| || |  |||||||| || |||||||||
Sbjct: 1198 acaatgttcacatcatcattcagggtgaacacatagctcggctcgccaaacccgtagtcc 1139

                                                                        
Query: 402  acctcgttgaagccgacgcggctccagtccgacaccgtcacggtgccgtaatccagcggc 461
            ||||||||||| |||||  ||||||| || |  ||    |  |||||||||||||||| |
Sbjct: 1138 acctcgttgaacccgacatggctccaatctgtgacgactagtgtgccgtaatccagcgac 1079

                                         
Query: 462  acattgtagtggtcgtccttggcgccacc 490
            |||||||| ||||  |||||||| |||||
Sbjct: 1078 acattgtaatggttctccttggcaccacc 1050
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>ref|NM_189610.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1581

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 386  gccgaagccgtagtccacctcg 407
            ||||||||||||||||||||||
Sbjct: 1168 gccgaagccgtagtccacctcg 1147
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 455    cagcggcacattgtagtggtcg 476
              ||||||||||||||||||||||
Sbjct: 889110 cagcggcacattgtagtggtcg 889089
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>dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0510F03
          Length = 149699

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 386   gccgaagccgtagtccacctcg 407
             ||||||||||||||||||||||
Sbjct: 66128 gccgaagccgtagtccacctcg 66107
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>dbj|AK110554.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C05, full
           insert sequence
          Length = 1033

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 386 gccgaagccgtagtccacctcg 407
           ||||||||||||||||||||||
Sbjct: 214 gccgaagccgtagtccacctcg 235
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>dbj|AK104360.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C03, full
           insert sequence
          Length = 1097

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 386 gccgaagccgtagtccacctcg 407
           ||||||||||||||||||||||
Sbjct: 679 gccgaagccgtagtccacctcg 658
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>dbj|AK098922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O23, full
            insert sequence
          Length = 1581

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 386  gccgaagccgtagtccacctcg 407
            ||||||||||||||||||||||
Sbjct: 1168 gccgaagccgtagtccacctcg 1147
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>dbj|AK065320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P13, full
            insert sequence
          Length = 2131

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 386  gccgaagccgtagtccacctcg 407
            ||||||||||||||||||||||
Sbjct: 1710 gccgaagccgtagtccacctcg 1689
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>dbj|AK065131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P14, full
            insert sequence
          Length = 1593

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 386  gccgaagccgtagtccacctcg 407
            ||||||||||||||||||||||
Sbjct: 1172 gccgaagccgtagtccacctcg 1151
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>dbj|AK061343.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E05, full
           insert sequence
          Length = 1097

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 386 gccgaagccgtagtccacctcg 407
           ||||||||||||||||||||||
Sbjct: 679 gccgaagccgtagtccacctcg 658
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>ref|NM_189533.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1314

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 393  ccgtagtccacctcgttgaagccgacgcggctccagtccgacacc 437
            |||||||||||||||  |||||| |  ||| ||||||||||||||
Sbjct: 1148 ccgtagtccacctcggcgaagcccagccgggtccagtccgacacc 1104
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>gb|AY663412.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA00576 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*0505 allele, and MHC class
             II antigen (HLA-DRB1) gene, HLA-DRB1-DRB1*110101 allele,
             complete cds
          Length = 108785

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   gtgaagaaaaagtacagtgag 167
             |||||||||||||||||||||
Sbjct: 49100 gtgaagaaaaagtacagtgag 49080
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>gb|AY663410.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA00576 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*030302
             allele and MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*0302 allele, complete cds; and MHC class II
             antigen (HLA-DRB1) gene, partial cds
          Length = 105171

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   gtgaagaaaaagtacagtgag 167
             |||||||||||||||||||||
Sbjct: 71811 gtgaagaaaaagtacagtgag 71791
to top
>gb|AY663408.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA04535 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*010401 allele, and MHC
             class II antigen (HLA-DRB1) gene, HLA-DRB1-DRB1*140501
             allele, complete cds
          Length = 100515

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   gtgaagaaaaagtacagtgag 167
             |||||||||||||||||||||
Sbjct: 53828 gtgaagaaaaagtacagtgag 53808
to top
>gb|AY663407.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA10923 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*020101
             allele, MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*050101 allele, and MHC class II antigen
             (HLA-DRB1) gene, HLA-DRB1-DRB1*030101 allele, complete cds
          Length = 106318

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   gtgaagaaaaagtacagtgag 167
             |||||||||||||||||||||
Sbjct: 60591 gtgaagaaaaagtacagtgag 60571
to top
>gb|AY663405.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA10540 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*010401 allele, and MHC
             class II antigen (HLA-DRB1) gene, complete cds
          Length = 116082

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   gtgaagaaaaagtacagtgag 167
             |||||||||||||||||||||
Sbjct: 56156 gtgaagaaaaagtacagtgag 56136
to top
>gb|AY663404.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA10540 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*030302
             allele and MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*0302 allele, complete cds; and MHC class II
             antigen (HLA-DRB1) gene, partial cds
          Length = 109441

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   gtgaagaaaaagtacagtgag 167
             |||||||||||||||||||||
Sbjct: 77105 gtgaagaaaaagtacagtgag 77085
to top
>gb|AY663402.1| Gorilla gorilla voucher Coriell Cell Repository DNA sample NG05251 MHC
             class II antigen (HLA-DRB1) gene, complete cds
          Length = 54488

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   gtgaagaaaaagtacagtgag 167
             |||||||||||||||||||||
Sbjct: 15227 gtgaagaaaaagtacagtgag 15207
to top
>gb|AY663399.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA01018 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*020101
             allele, MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*050101 allele, and MHC class II antigen
             (HLA-DRB1) gene, HLA-DRB1-DRB1*030101 allele, complete cds
          Length = 105464

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   gtgaagaaaaagtacagtgag 167
             |||||||||||||||||||||
Sbjct: 53906 gtgaagaaaaagtacagtgag 53886
to top
>gb|AY663397.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA01960 MHC
             class II antigen (HLA-DQB1), MHC class II antigen
             (HLA-DQA1), and MHC class II antigen (HLA-DRB1) genes,
             complete cds
          Length = 94591

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   gtgaagaaaaagtacagtgag 167
             |||||||||||||||||||||
Sbjct: 49295 gtgaagaaaaagtacagtgag 49275
to top
>gb|AY663396.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA14660 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*050101
             allele and MHC class II antigen (HLA-DQA1) gene, complete
             cds; and MHC class II antigen (HLA-DRB1) gene, partial cds
          Length = 100091

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   gtgaagaaaaagtacagtgag 167
             |||||||||||||||||||||
Sbjct: 65800 gtgaagaaaaagtacagtgag 65780
to top
>gb|AY663394.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA14661 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*0505 allele, and MHC class
             II antigen (HLA-DRB1) gene, HLA-DRB1-DRB1*110401 allele,
             complete cds
          Length = 127159

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   gtgaagaaaaagtacagtgag 167
             |||||||||||||||||||||
Sbjct: 68567 gtgaagaaaaagtacagtgag 68547
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>emb|CR854861.1| Human DNA sequence from clone XX-BQB97F8_109B10_3 on chromosome 6,
            complete sequence
          Length = 8396

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 147  gtgaagaaaaagtacagtgag 167
            |||||||||||||||||||||
Sbjct: 2597 gtgaagaaaaagtacagtgag 2617
to top
>emb|Z84489.1|HS93N13 Human DNA sequence from clone RP1-93N13 on chromosome 6p21 Contains the
             HLA-DRB1*03011 and HLA-DQA1*05011 genes for major
             histocompatibility complex class II DR beta 1 and DQ alpha
             1, a CpG island, ESTs, STSs and GSSs, complete sequence
          Length = 86896

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   gtgaagaaaaagtacagtgag 167
             |||||||||||||||||||||
Sbjct: 40388 gtgaagaaaaagtacagtgag 40368
to top
>emb|AL662842.3| Human DNA sequence from clone XXbac-181I15 on chromosome 6 contains the
              HLA-DRB3 gene for major histocompatibility complex, class
              II, DR beta 3, a major histocompatibility complex, class
              II, DR beta pseudogene, the HLA-DRB1 gene for major
              histocompatibility complex, class II, DR beta 1 and one CpG
              island, complete sequence
          Length = 130819

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 147    gtgaagaaaaagtacagtgag 167
              |||||||||||||||||||||
Sbjct: 110645 gtgaagaaaaagtacagtgag 110665
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>emb|CR753901.9| Human DNA sequence from clone DADB-166N19 on chromosome 6, complete
            sequence
          Length = 110625

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 147  gtgaagaaaaagtacagtgag 167
            |||||||||||||||||||||
Sbjct: 2495 gtgaagaaaaagtacagtgag 2515
to top
>emb|CR753835.3| Human DNA sequence from clone DAMA-265D9 on chromosome 6, complete
             sequence
          Length = 101064

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 147   gtgaagaaaaagtacagtgag 167
             |||||||||||||||||||||
Sbjct: 70801 gtgaagaaaaagtacagtgag 70821
to top
>emb|CR753309.2| Human DNA sequence from clone DADB-102D14 on chromosome 6, complete
             sequence
          Length = 107898

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 147   gtgaagaaaaagtacagtgag 167
             |||||||||||||||||||||
Sbjct: 79720 gtgaagaaaaagtacagtgag 79740
to top
>gb|AC154217.2| Mus musculus BAC clone RP24-357L19 from chromosome 17, complete sequence
          Length = 183535

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 160    acagtgagaaggtgttacaggcatgagaa 188
              |||| ||||||||| ||||||||||||||
Sbjct: 115536 acagagagaaggtggtacaggcatgagaa 115508
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 378     ccgggctcgccgaagccgtag 398
               |||||||||||||||||||||
Sbjct: 3564488 ccgggctcgccgaagccgtag 3564508
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>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0509B06
          Length = 104515

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 393   ccgtagtccacctcgttgaagccgacgcggctccagtccgacacc 437
             |||||||||||||||  |||||| |  ||| ||||||||||||||
Sbjct: 76599 ccgtagtccacctcggcgaagcccagccgggtccagtccgacacc 76643
to top
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406H10
          Length = 156419

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 393   ccgtagtccacctcgttgaagccgacgcggctccagtccgacacc 437
             |||||||||||||||  |||||| |  ||| ||||||||||||||
Sbjct: 56827 ccgtagtccacctcggcgaagcccagccgggtccagtccgacacc 56871
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>emb|AJ132431.1|GPU132431 Gibberella pulicaris acl1 gene, exons 1-2, isolate R-6380
          Length = 2819

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 229  cgtacttggcaagctcgtcggcgaa 253
            |||| ||||||||||||||||||||
Sbjct: 2118 cgtagttggcaagctcgtcggcgaa 2094
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>ref|NM_189664.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 912

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 197 cggccacggccaagaagcag 216
           ||||||||||||||||||||
Sbjct: 40  cggccacggccaagaagcag 21
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>gb|AC142119.2| Homo sapiens fosmid clone XXFOS-80464F2 from 2, complete sequence
          Length = 10256

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   agtgtggtttatacctgcac 101
            ||||||||||||||||||||
Sbjct: 5332 agtgtggtttatacctgcac 5313
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>emb|CR932703.1|CNS0KYEU Paramecium tetraurelia, Small GTPase rab, putative, complete gene
          Length = 3001

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 38  ctatttttgcacattgaaaa 57
           ||||||||||||||||||||
Sbjct: 495 ctatttttgcacattgaaaa 514
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>emb|CR812847.5| Zebrafish DNA sequence from clone DKEY-9I15 in linkage group 14,
             complete sequence
          Length = 230522

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    agatactagtgtggtttata 94
             ||||||||||||||||||||
Sbjct: 97669 agatactagtgtggtttata 97650
to top
>gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence
          Length = 138186

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 386    gccgaagccgtagtccacctcgttgaagccga 417
              ||||||||||||||| ||||||  ||||||||
Sbjct: 109700 gccgaagccgtagtcgacctcggagaagccga 109731
to top
>emb|BX927151.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 4/10
          Length = 349459

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 345    atgttgacatcgtcgttgag 364
              ||||||||||||||||||||
Sbjct: 197948 atgttgacatcgtcgttgag 197967
to top
>emb|BX890620.9| Zebrafish DNA sequence from clone DKEY-48C14 in linkage group 14,
              complete sequence
          Length = 214857

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 136    tgcacaccaatgtgaagaaaaagt 159
              ||||||||| ||||||||||||||
Sbjct: 193251 tgcacaccattgtgaagaaaaagt 193228
to top
>gb|AC125610.4| Homo sapiens 3 BAC RP11-189B7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 159706

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 39    tatttttgcacattgaaaagaaat 62
             ||||||||||||||||||| ||||
Sbjct: 87054 tatttttgcacattgaaaataaat 87077
to top
>gb|AC156569.3| Mus musculus BAC clone RP23-315K10 from chromosome 13, complete
             sequence
          Length = 165570

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   ccacggccaagaagcagtat 219
             ||||||||||||||||||||
Sbjct: 51899 ccacggccaagaagcagtat 51880
to top
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 345     atgttgacatcgtcgttgag 364
               ||||||||||||||||||||
Sbjct: 1242763 atgttgacatcgtcgttgag 1242782
to top
>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0710E05
          Length = 179714

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    cggccacggccaagaagcag 216
              ||||||||||||||||||||
Sbjct: 117181 cggccacggccaagaagcag 117200
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 430     ccgacaccgtcacggtgccg 449
               ||||||||||||||||||||
Sbjct: 5342571 ccgacaccgtcacggtgccg 5342552
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>emb|BX005228.7| Zebrafish DNA sequence from clone CH211-163M17 in linkage group 14,
              complete sequence
          Length = 171037

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     agatactagtgtggtttata 94
              ||||||||||||||||||||
Sbjct: 133548 agatactagtgtggtttata 133567
to top
>dbj|AK109404.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-E06, full
           insert sequence
          Length = 1095

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 197 cggccacggccaagaagcag 216
           ||||||||||||||||||||
Sbjct: 63  cggccacggccaagaagcag 44
to top
>emb|Y00546.1|CGHOMTHR Corynebacterium glutamicum hom-thrB genes for homoserine
            dehydrogenase and homoserine kinase
          Length = 3685

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 345  atgttgacatcgtcgttgag 364
            ||||||||||||||||||||
Sbjct: 1250 atgttgacatcgtcgttgag 1269
to top
>emb|Y00476.1|BLTHRA B. lactofermentum thr A gene
          Length = 1483

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 345 atgttgacatcgtcgttgag 364
           ||||||||||||||||||||
Sbjct: 345 atgttgacatcgtcgttgag 364
to top
>dbj|AK104471.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D10, full
           insert sequence
          Length = 1094

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 197 cggccacggccaagaagcag 216
           ||||||||||||||||||||
Sbjct: 62  cggccacggccaagaagcag 43
to top
>dbj|AK104183.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C11, full
           insert sequence
          Length = 1095

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 197 cggccacggccaagaagcag 216
           ||||||||||||||||||||
Sbjct: 63  cggccacggccaagaagcag 44
to top
>dbj|AK100363.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083N07, full
           insert sequence
          Length = 1308

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 197 cggccacggccaagaagcag 216
           ||||||||||||||||||||
Sbjct: 276 cggccacggccaagaagcag 257
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>dbj|AK061466.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-C05, full
           insert sequence
          Length = 1095

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 197 cggccacggccaagaagcag 216
           ||||||||||||||||||||
Sbjct: 63  cggccacggccaagaagcag 44
to top
>dbj|AK060964.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B05, full
           insert sequence
          Length = 1114

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 197 cggccacggccaagaagcag 216
           ||||||||||||||||||||
Sbjct: 63  cggccacggccaagaagcag 44
to top
>gb|AY110165.1| Zea mays CL20454_1 mRNA sequence
          Length = 1000

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 386 gccgaagccgtagtccacctcgttgaagccga 417
           ||||||||||||||| ||||||  ||||||||
Sbjct: 577 gccgaagccgtagtcgacctcggagaagccga 546
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>emb|CT030714.5| Mouse DNA sequence from clone RP23-223P19 on chromosome 13, complete
              sequence
          Length = 176581

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    ccacggccaagaagcagtat 219
              ||||||||||||||||||||
Sbjct: 165197 ccacggccaagaagcagtat 165178
to top
>emb|AL929503.4| Zebrafish DNA sequence from clone CH211-158I6, complete sequence
          Length = 174012

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 136   tgcacaccaatgtgaagaaaaagt 159
             ||||||||| ||||||||||||||
Sbjct: 17299 tgcacaccattgtgaagaaaaagt 17322


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,582,936
Number of Sequences: 3902068
Number of extensions: 4582936
Number of successful extensions: 104627
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104365
Number of HSP's gapped (non-prelim): 262
length of query: 491
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 469
effective length of database: 17,147,199,772
effective search space: 8042036693068
effective search space used: 8042036693068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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