ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags33e01 |
|---|---|
| Clone Library Name | barley_pub |
>KPPR_WHEAT (P26302) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 404 Score = 153 bits (387), Expect(2) = 1e-55 Identities = 76/76 (100%), Positives = 76/76 (100%) Frame = -2 Query: 509 GQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTI 330 GQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTI Sbjct: 319 GQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTI 378 Query: 329 VGLKIRDLYEQIIAER 282 VGLKIRDLYEQIIAER Sbjct: 379 VGLKIRDLYEQIIAER 394 Score = 83.2 bits (204), Expect(2) = 1e-55 Identities = 35/35 (100%), Positives = 35/35 (100%) Frame = -1 Query: 612 LFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFG 508 LFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFG Sbjct: 285 LFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFG 319
>KPPR_MESCR (P27774) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 397 Score = 143 bits (360), Expect(2) = 1e-50 Identities = 69/76 (90%), Positives = 73/76 (96%) Frame = -2 Query: 509 GQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTI 330 G EV+VLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKH DFPGSNNGTGLFQTI Sbjct: 312 GNEVTVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQDFPGSNNGTGLFQTI 371 Query: 329 VGLKIRDLYEQIIAER 282 VGLKIRDL+EQ+IA + Sbjct: 372 VGLKIRDLFEQLIASK 387 Score = 77.0 bits (188), Expect(2) = 1e-50 Identities = 32/35 (91%), Positives = 33/35 (94%) Frame = -1 Query: 612 LFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFG 508 LFDEGS+I WIPCGRKLTCSYPGIKF YGPDTYFG Sbjct: 278 LFDEGSSITWIPCGRKLTCSYPGIKFFYGPDTYFG 312
>KPPR_ARATH (P25697) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 395 Score = 145 bits (366), Expect(2) = 3e-50 Identities = 71/74 (95%), Positives = 73/74 (98%) Frame = -2 Query: 503 EVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVG 324 EVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVG Sbjct: 313 EVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVG 372 Query: 323 LKIRDLYEQIIAER 282 LKIRDLYEQ+IA + Sbjct: 373 LKIRDLYEQLIANK 386 Score = 73.2 bits (178), Expect(2) = 3e-50 Identities = 30/34 (88%), Positives = 33/34 (97%) Frame = -1 Query: 612 LFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYF 511 LFDEGSTI+WIPCGRKLTCSYPGIKF+Y PD+YF Sbjct: 277 LFDEGSTISWIPCGRKLTCSYPGIKFNYEPDSYF 310
>KPPR_SPIOL (P09559) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 402 Score = 137 bits (344), Expect(2) = 2e-49 Identities = 64/76 (84%), Positives = 71/76 (93%) Frame = -2 Query: 509 GQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTI 330 G EV+V+EMDG FDRLDELIYVESHLSNLSTKFYGEVTQQMLKH +FPGSNNGTG FQTI Sbjct: 317 GNEVTVVEMDGMFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQNFPGSNNGTGFFQTI 376 Query: 329 VGLKIRDLYEQIIAER 282 +GLKIRDL+EQ++A R Sbjct: 377 IGLKIRDLFEQLVASR 392 Score = 78.6 bits (192), Expect(2) = 2e-49 Identities = 32/35 (91%), Positives = 35/35 (100%) Frame = -1 Query: 612 LFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFG 508 LFDEGSTI+WIPCGRKLTCSYPGIKFSYGPDT++G Sbjct: 283 LFDEGSTISWIPCGRKLTCSYPGIKFSYGPDTFYG 317
>KPPR_CHLRE (P19824) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 375 Score = 129 bits (325), Expect(2) = 3e-45 Identities = 60/73 (82%), Positives = 70/73 (95%) Frame = -2 Query: 509 GQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTI 330 GQEVSVLEMDGQFD+L+ELIYVESHLSN S KFYGE+TQQMLK++ FPGSNNGTGLFQTI Sbjct: 296 GQEVSVLEMDGQFDKLEELIYVESHLSNTSAKFYGEITQQMLKNSGFPGSNNGTGLFQTI 355 Query: 329 VGLKIRDLYEQII 291 VGLK+R++YE+I+ Sbjct: 356 VGLKVREVYERIV 368 Score = 72.0 bits (175), Expect(2) = 3e-45 Identities = 29/35 (82%), Positives = 33/35 (94%) Frame = -1 Query: 612 LFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFG 508 LFDEGSTI+WIPCGRKLTCS+PGIK YGPDT++G Sbjct: 262 LFDEGSTISWIPCGRKLTCSFPGIKMFYGPDTWYG 296
>KPPR_SYNY3 (P37101) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)| (PRKase) (PRK) Length = 332 Score = 108 bits (270), Expect(2) = 2e-37 Identities = 46/75 (61%), Positives = 65/75 (86%) Frame = -2 Query: 509 GQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTI 330 G EVS+LE+DG+F+ L+E++YVE+HLS TK+YGE+T+ +LKH D+PG++NGTGLFQ + Sbjct: 251 GNEVSLLEVDGRFENLEEMVYVENHLSKTGTKYYGEMTELLLKHKDYPGTDNGTGLFQVL 310 Query: 329 VGLKIRDLYEQIIAE 285 VGLK+R +YEQ+ AE Sbjct: 311 VGLKMRKVYEQLTAE 325 Score = 67.0 bits (162), Expect(2) = 2e-37 Identities = 27/35 (77%), Positives = 30/35 (85%) Frame = -1 Query: 612 LFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFG 508 LFDEGSTI+W PCGRKLTC+YPGIK YGPD + G Sbjct: 217 LFDEGSTIDWRPCGRKLTCTYPGIKMYYGPDNFMG 251
>CARB_SULAC (Q4J8E8) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1052 Score = 32.3 bits (72), Expect = 1.1 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = +1 Query: 79 HGEDFREVQNAGFHEFCSELSTVF*L*YIQTSHKKREDAHSH*VGDEMIHELEFGAHQTF 258 +G V+ AG H + +S F +T HK +E HS + E+ + F F Sbjct: 769 YGVVLEHVEEAGVHSGDATISIPFKKLSPETVHKMKESIHS--ISRELNIKGPFNVQ--F 824 Query: 259 AASAGTPALSAM-ICS*RSLIFSPTIVWKRPVPLLLPG 369 GTP + M + + RS+ FS +V K + L L G Sbjct: 825 VVKNGTPYIIEMNLRASRSMPFSSKVVGKNIIDLALTG 862
>PALFB_EUGGR (P84737) Photoactivated adenylate cyclase alpha-subunit-like| protein FB Length = 1019 Score = 30.4 bits (67), Expect = 4.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +3 Query: 270 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 377 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVLLATDICSFTPLSEKCSLTEVWTIC 640
>PCYAA_EUGGR (Q8S9F2) Photoactivated adenylate cyclase subunit alpha (EC| 4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit) Length = 1019 Score = 30.0 bits (66), Expect = 5.6 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +3 Query: 270 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 377 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640
>PCYAA_ASTLO (Q76L34) Photoactivated adenylate cyclase subunit alpha (EC| 4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit) Length = 1019 Score = 30.0 bits (66), Expect = 5.6 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +3 Query: 270 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 377 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSERCSLTEVWTIC 640
>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like| protein ST- Length = 1019 Score = 30.0 bits (66), Expect = 5.6 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +3 Query: 270 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 377 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640
>PAL1F_EUGGR (P84738) Photoactivated adenylate cyclase alpha-subunit-like| protein 1224-5/1F Length = 1019 Score = 30.0 bits (66), Expect = 5.6 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +3 Query: 270 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 377 RN P+S ++ + + + S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATAISSFTPLSEKCSLTEVWTIC 640
>MURD_STRR6 (Q8DQM2) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 450 Score = 30.0 bits (66), Expect = 5.6 Identities = 27/90 (30%), Positives = 40/90 (44%) Frame = -2 Query: 554 LTLASNFPMAQTLTSGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHA 375 L L N +A+ LTS E +V+ +++D ++L + F GEV Sbjct: 220 LVLNFNQDLAKDLTSKTEATVVPFS-TLEKVDG-----AYLEDGQLYFRGEVVMAA-NEI 272 Query: 374 DFPGSNNGTGLFQTIVGLKIRDLYEQIIAE 285 PGS+N TI K+RD+ Q I E Sbjct: 273 GVPGSHNVENALATIAVAKLRDVDNQTIKE 302
>MURD_STRPN (Q97RU8) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 450 Score = 30.0 bits (66), Expect = 5.6 Identities = 27/90 (30%), Positives = 40/90 (44%) Frame = -2 Query: 554 LTLASNFPMAQTLTSGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHA 375 L L N +A+ LTS E +V+ +++D ++L + F GEV Sbjct: 220 LVLNFNQDLAKDLTSKTEATVVPFS-TLEKVDG-----AYLEDGQLYFRGEVVMAA-NEI 272 Query: 374 DFPGSNNGTGLFQTIVGLKIRDLYEQIIAE 285 PGS+N TI K+RD+ Q I E Sbjct: 273 GVPGSHNVENALATIAVAKLRDVDNQTIKE 302
>MATK_PINCE (Q6BDJ4) Maturase K (Intron maturase)| Length = 515 Score = 30.0 bits (66), Expect = 5.6 Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 4/101 (3%) Frame = -2 Query: 587 TGSLVEESLHALTLASNFPMAQTLTSGQE--VSVLEMDGQFDRLDELIYVESHLSNL--S 420 +GS + L+ + + A+TL + + V+ + + L ++++ + +L S Sbjct: 415 SGSFGRDGLYRIKYILSLSCAKTLACKHKSTIRVVRKELGPELLSKIVFKRTRFDSLPFS 474 Query: 419 TKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQ 297 +K ++ + H+D P N +Q I LKI +L++Q Sbjct: 475 SKAAARSQRERIWHSDIPQINPLVNSWQKIQDLKIENLFDQ 515
>GA2L1_HUMAN (Q99501) GAS2-like protein 1 (Growth arrest-specific 2-like 1)| (GAS2-related protein on chromosome 22) (GAR22 protein) Length = 681 Score = 29.3 bits (64), Expect = 9.5 Identities = 18/48 (37%), Positives = 21/48 (43%) Frame = +2 Query: 392 AVSPPRRTWLRGCLGGSQHR*VHLVCQIAHPSPAPIPLGPK*VSGP*E 535 A + P RTW RG + R PS P P GP+ SGP E Sbjct: 623 ACTEPSRTWARGRMDTQPDR---------KPSRIPTPRGPRRPSGPAE 661
>MA2C1_HUMAN (Q9NTJ4) Alpha-mannosidase 2C1 (EC 3.2.1.24) (Alpha-D-mannoside| mannohydrolase) (Mannosidase alpha class 2C member 1) (Alpha mannosidase 6A8B) Length = 1040 Score = 29.3 bits (64), Expect = 9.5 Identities = 19/65 (29%), Positives = 26/65 (40%) Frame = +1 Query: 214 DEMIHELEFGAHQTFAASAGTPALSAMICS*RSLIFSPTIVWKRPVPLLLPGKSACFSIC 393 + M H + +H SA AL A L+ T+ WKR + LP S+ Sbjct: 591 EAMCHYEDIRSHGNTLLSAAAAALCAGEPGPEGLLIVNTLPWKRIEVMALPKPGGAHSLA 650 Query: 394 CVTSP 408 VT P Sbjct: 651 LVTVP 655
>M3K8_MOUSE (Q07174) Mitogen-activated protein kinase kinase kinase 8 (EC| 2.7.11.25) (COT proto-oncogene serine/threonine-protein kinase) (C-COT) (Cancer Osaka thyroid oncogene) Length = 467 Score = 29.3 bits (64), Expect = 9.5 Identities = 15/43 (34%), Positives = 26/43 (60%) Frame = -2 Query: 518 LTSGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQ 390 L SGQEV L ++ +++L+ +H+SN++ FYG Q+ Sbjct: 64 LRSGQEVPWLS-SVRYGTVEDLLAFANHVSNMTKHFYGRRPQE 105
>M3K8_HUMAN (P41279) Mitogen-activated protein kinase kinase kinase 8 (EC| 2.7.11.25) (COT proto-oncogene serine/threonine-protein kinase) (C-COT) (Cancer Osaka thyroid oncogene) Length = 467 Score = 29.3 bits (64), Expect = 9.5 Identities = 15/43 (34%), Positives = 26/43 (60%) Frame = -2 Query: 518 LTSGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQ 390 L SGQEV L ++ +++L+ +H+SN + FYG+ Q+ Sbjct: 64 LLSGQEVPWLS-SVRYGTVEDLLAFANHISNTAKHFYGQRPQE 105
>PEM4_PHACH (P19136) Peroxidase manganese-dependent H4 precursor (EC 1.11.1.13)| (MP-I) Length = 382 Score = 29.3 bits (64), Expect = 9.5 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%) Frame = -2 Query: 593 PSTGSLVEESLHALT-LASNFPMAQTLTSGQEVSVLEMD--GQFDRLDELIYV---ESHL 432 P+ L+ E ++T + F A + + VS+L + D++DE I +S Sbjct: 159 PAVEGLIPEPQDSVTKILQRFEDAGNFSPFEVVSLLASHTVARADKVDETIDAAPFDSTP 218 Query: 431 SNLSTKFYGEVTQQMLKHADFPGSNNGTG 345 T+ + EV +LK FPGSNN TG Sbjct: 219 FTFDTQVFLEV---LLKGTGFPGSNNNTG 244
>DDL_VIBVY (Q7ME85) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 331 Score = 29.3 bits (64), Expect = 9.5 Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 4/59 (6%) Frame = -2 Query: 566 SLHALTLASNFPMAQTLTSGQEVSVLEMD----GQFDRLDELIYVESHLSNLSTKFYGE 402 S H ++L S+ + Q L + V+VL+++ G FD+ + L+Y++ H ++ + + E Sbjct: 14 SEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEGWFDQKERLVYLDIHTKSVKSDEFNE 72
>DDL_VIBVU (Q8D781) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 331 Score = 29.3 bits (64), Expect = 9.5 Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 4/59 (6%) Frame = -2 Query: 566 SLHALTLASNFPMAQTLTSGQEVSVLEMD----GQFDRLDELIYVESHLSNLSTKFYGE 402 S H ++L S+ + Q L + V+VL+++ G FD+ + L+Y++ H ++ + + E Sbjct: 14 SEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEGWFDQKERLVYLDIHTKSVKSDEFNE 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,546,119 Number of Sequences: 219361 Number of extensions: 1771894 Number of successful extensions: 4833 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4658 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4832 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
