ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32o24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC169376.2| Sorghum bicolor clone SB_BBc0046M17, complete seq... 38 6.2

>gb|AC169376.2| Sorghum bicolor clone SB_BBc0046M17, complete sequence
          Length = 127914

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 96/122 (78%), Gaps = 1/122 (0%)
 Strand = Plus / Minus

                                                                         
Query: 10    agtcttgctcagggnaaaaccctctccaggaaactaacgaatcgtttcgaatacaagttc 69
             ||||||| |||||| ||||| ||||| |||||  | || |||||||| || ||| | |||
Sbjct: 75257 agtcttgttcaggg-aaaacactctcaaggaactttacaaatcgttttgagtacgaattc 75199

                                                                         
Query: 70    ggatcaacggatgatatngagagagggtcganntttnnagatttgaccgcatgctccacc 129
             |||||||| | |||||| || || || ||||  ||    |||||||| |||||||| |||
Sbjct: 75198 ggatcaacagctgatattgaaaggggatcgaacttgagtgatttgactgcatgctcgacc 75139

               
Query: 130   ct 131
             ||
Sbjct: 75138 ct 75137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 585,259
Number of Sequences: 3902068
Number of extensions: 585259
Number of successful extensions: 26870
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 26870
Number of HSP's gapped (non-prelim): 1
length of query: 132
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 111
effective length of database: 17,151,101,840
effective search space: 1903772304240
effective search space used: 1903772304240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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