ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags33d23 |
|---|---|
| Clone Library Name | barley_pub |
>TT12_ARATH (Q9LYT3) TRANSPARENT TESTA 12 protein| Length = 507 Score = 75.5 bits (184), Expect = 2e-13 Identities = 34/81 (41%), Positives = 49/81 (60%) Frame = -1 Query: 489 LITGVAVGCGWQVFVAYVNVGCYYFIGIPLGVFMGFYLGLGAKGVWSGMVXXXXXXXXXX 310 +++GVA+G GWQ VAYVN+ YY IG+P+G +GF LG G+W GM+ Sbjct: 413 ILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTL 472 Query: 309 XLWVTFRTDWQHEVEKAHARI 247 + +T +T+W EVE A R+ Sbjct: 473 IV-LTLKTNWTSEVENAAQRV 492
>YAO6_SCHPO (Q10085) Hypothetical protein C11D3.06 in chromosome I| Length = 455 Score = 44.3 bits (103), Expect = 4e-04 Identities = 25/77 (32%), Positives = 35/77 (45%) Frame = -1 Query: 480 GVAVGCGWQVFVAYVNVGCYYFIGIPLGVFMGFYLGLGAKGVWSGMVXXXXXXXXXXXLW 301 G G G Q A VN+ YY +PLG+++ F+ G G G+W G V Sbjct: 369 GALRGTGRQKVGAIVNITAYYLFALPLGIYLAFH-GKGLVGLWIGQVIALSIVGILELK- 426 Query: 300 VTFRTDWQHEVEKAHAR 250 + TDW + KA +R Sbjct: 427 IVMATDWISQSRKAISR 443
>NORM_PSEAE (Q9HTR0) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 488 Score = 38.9 bits (89), Expect = 0.016 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = -1 Query: 438 VNVGCYYFIGIPLGVFMGFYLGLGAKGVWSGM 343 V + CY+ +G+PL + F G GA GVW G+ Sbjct: 395 VGLACYWLVGVPLACLLAFAAGWGAAGVWWGL 426
>NORM_PSESM (Q88BA2) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 460 Score = 37.4 bits (85), Expect = 0.048 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -1 Query: 438 VNVGCYYFIGIPLGVFMGFYLGLGAKGVWSGM 343 + +GCY+ I P +GFY GA GVW G+ Sbjct: 395 IGLGCYWLIAAPAAWLLGFYADGGASGVWWGL 426
>NORM_BURVI (Q9F5N7) Multidrug resistance protein norM (Multidrug-efflux| transporter) Length = 462 Score = 36.2 bits (82), Expect = 0.11 Identities = 13/27 (48%), Positives = 20/27 (74%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGM 343 Y+ IG P G ++ F+ GLGA+G+W G+ Sbjct: 409 YWGIGFPTGYWLAFHAGLGARGLWWGL 435
>YD338_YEAST (Q05497) Hypothetical 77.8 kDa protein in MRPS28-HXT7 intergenic| region Length = 695 Score = 35.4 bits (80), Expect = 0.18 Identities = 18/63 (28%), Positives = 28/63 (44%) Frame = -1 Query: 468 GCGWQVFVAYVNVGCYYFIGIPLGVFMGFYLGLGAKGVWSGMVXXXXXXXXXXXLWVTFR 289 G G Q + VN+ YY GIPL + + ++ + G+W G+ +V F Sbjct: 595 GQGMQSLGSIVNLMAYYLFGIPLALILSWFFDMKLYGLWIGIGSAMLLIGLVEAYYVLF- 653 Query: 288 TDW 280 DW Sbjct: 654 PDW 656
>NORM_BURPS (Q63S57) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 468 Score = 35.4 bits (80), Expect = 0.18 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGM 343 Y+ IG P G + F+ GLGA+G+W G+ Sbjct: 410 YWGIGFPTGYWFAFHAGLGARGLWWGL 436
>NORM_BURMA (Q62LW6) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 468 Score = 35.4 bits (80), Expect = 0.18 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGM 343 Y+ IG P G + F+ GLGA+G+W G+ Sbjct: 410 YWGIGFPTGYWFAFHAGLGARGLWWGL 436
>NORM_RHILO (Q98D15) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 467 Score = 35.0 bits (79), Expect = 0.24 Identities = 14/38 (36%), Positives = 24/38 (63%) Frame = -1 Query: 456 QVFVAYVNVGCYYFIGIPLGVFMGFYLGLGAKGVWSGM 343 +V + Y +G Y+ +G+PLGV + F+ G G+W G+ Sbjct: 402 KVPMIYAAIG-YWGVGLPLGVLLAFHFGFHGVGIWIGL 438
>NORM_BRUSU (Q8G2I1) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 471 Score = 34.7 bits (78), Expect = 0.31 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGM 343 Y+ +G+PLG + F G+G G+W G+ Sbjct: 417 YWGVGLPLGAVLAFQFGMGGVGIWLGL 443
>NORM_BRUME (Q8YFD7) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 471 Score = 34.7 bits (78), Expect = 0.31 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGM 343 Y+ +G+PLG + F G+G G+W G+ Sbjct: 417 YWGVGLPLGAVLAFQFGMGGVGIWLGL 443
>NORM_XANAC (Q8PG07) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 458 Score = 34.7 bits (78), Expect = 0.31 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGMV 340 Y+ +G+P+G +G LG G KG+W G++ Sbjct: 404 YWGVGMPIGAGLGLGLGWGPKGMWVGLI 431
>NORM_BACSU (O31855) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 452 Score = 33.9 bits (76), Expect = 0.53 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGMV 340 Y+ IG+P+G +G + LGA G W G++ Sbjct: 398 YWVIGLPVGYMVGTFTSLGAFGYWIGLI 425
>NORM_BACLD (Q65IG9) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 452 Score = 33.9 bits (76), Expect = 0.53 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGMV 340 Y+ IG+P+G +G Y GA G W G++ Sbjct: 398 YWIIGLPVGFVIGTYTSFGAFGYWIGLI 425
>NORM_XANCP (Q8P4E6) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 458 Score = 33.5 bits (75), Expect = 0.69 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGMV 340 Y+ +G+PLG +G LG G +G+W G++ Sbjct: 404 YWGLGMPLGAGLGLGLGWGPQGMWIGLI 431
>NORM_BACHK (Q6HLG9) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 453 Score = 32.7 bits (73), Expect = 1.2 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGMV 340 Y+ IG+PLG + Y AKG W G++ Sbjct: 398 YWVIGLPLGYILATYTDWAAKGYWIGLI 425
>NORM_BACCZ (Q63DZ4) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 453 Score = 32.7 bits (73), Expect = 1.2 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGMV 340 Y+ IG+PLG + Y AKG W G++ Sbjct: 398 YWVIGLPLGYILATYTDWAAKGYWIGLI 425
>NORM_BACAN (Q81T85) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 453 Score = 32.7 bits (73), Expect = 1.2 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGMV 340 Y+ IG+PLG + Y AKG W G++ Sbjct: 398 YWVIGLPLGYILATYTDWAAKGYWIGLI 425
>NORM_BACCR (Q81G28) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 452 Score = 32.7 bits (73), Expect = 1.2 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGMV 340 Y+ IG+PLG + Y AKG W G++ Sbjct: 398 YWIIGLPLGYILATYTEWAAKGYWIGLI 425
>NORM_BACC1 (Q73BB8) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 454 Score = 32.7 bits (73), Expect = 1.2 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGMV 340 Y+ IG+PLG + Y AKG W G++ Sbjct: 398 YWVIGLPLGYILATYTDWAAKGYWIGLI 425
>NORM_XYLFT (Q879Z5) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 469 Score = 32.3 bits (72), Expect = 1.5 Identities = 11/28 (39%), Positives = 21/28 (75%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGMV 340 Y+ +G+PLG+ +GF L ++G+W G++ Sbjct: 416 YWGLGMPLGLGLGFALEWNSRGMWIGLI 443
>NORM_XYLFA (Q9PA34) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 469 Score = 32.3 bits (72), Expect = 1.5 Identities = 11/28 (39%), Positives = 21/28 (75%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGMV 340 Y+ +G+PLG+ +GF L ++G+W G++ Sbjct: 416 YWGLGMPLGLGLGFALEWNSRGMWIGLI 443
>NORM_PSEPK (Q88CB9) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 462 Score = 32.0 bits (71), Expect = 2.0 Identities = 15/54 (27%), Positives = 24/54 (44%) Frame = -1 Query: 438 VNVGCYYFIGIPLGVFMGFYLGLGAKGVWSGMVXXXXXXXXXXXLWVTFRTDWQ 277 + + CY+ +G P F LG GA G+W G+ +TF +W+ Sbjct: 395 IGLVCYWLVGAPSAWLFTFTLGGGAVGIWWGLALGLACAAVA----LTFGFEWR 444
>NORM_PASMU (Q9CMZ9) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 464 Score = 32.0 bits (71), Expect = 2.0 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%) Frame = -1 Query: 447 VAYVNVGCYYFIGIPLGVFMG----FYLGLGAKGVWSGMV 340 + Y+ + CY+ +G+P+G + LGA+G W G V Sbjct: 392 ILYITLFCYWVVGMPMGYTLARTDLLMPALGAEGFWIGFV 431
>NORM_DEIRA (Q9RY44) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 451 Score = 32.0 bits (71), Expect = 2.0 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = -1 Query: 438 VNVGCYYFIGIPLGVFMGFYLGLGAKGVWSGM 343 V++ Y+ +G+ LG + GLGA+G+W G+ Sbjct: 395 VSLVAYWVVGLGLGSVLSSVAGLGARGLWFGL 426
>NORM_AGRT5 (Q8UDF5) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 465 Score = 31.6 bits (70), Expect = 2.6 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -1 Query: 423 YYFIGIPLGVFMGFYLGLGAKGVWSGMV 340 Y+ IG+ L M F LG G +GVW G V Sbjct: 412 YWPIGLALAWTMAFPLGFGGRGVWFGFV 439
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 31.2 bits (69), Expect = 3.4 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 1/82 (1%) Frame = +2 Query: 236 PHIAILAWAFSTSCCQSVLK-VTHNRMSVCNSVPPITMPLQTPFAPRPR*KPMNTPSGMP 412 P L + + CC+ V + T + N PP T P+ T P TP+G Sbjct: 1862 PMAFCLNYEINVQCCECVTQPTTMTTTTTENPTPPTTTPITTTTTVTPT----PTPTGTQ 1917 Query: 413 MK**HPTFTYATNTCQPHPTAT 478 P T T T P PT T Sbjct: 1918 TPTTTPITTTTTVTPTPTPTGT 1939
>NORM_BORPA (Q7WAK9) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 460 Score = 31.2 bits (69), Expect = 3.4 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -1 Query: 456 QVFVAYVNVGCYYFIGIPLGVFMGFYLGLGAKGVWSGM 343 +V + Y +G Y+ +G+P G + F+ G GVWSG+ Sbjct: 397 RVPMLYAALG-YWGVGLPSGAALAFWAGWRGVGVWSGL 433
>NORM_BORBR (Q7WJR0) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 460 Score = 31.2 bits (69), Expect = 3.4 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -1 Query: 456 QVFVAYVNVGCYYFIGIPLGVFMGFYLGLGAKGVWSGM 343 +V + Y +G Y+ +G+P G + F+ G GVWSG+ Sbjct: 397 RVPMLYAALG-YWGVGLPSGAALAFWAGWRGVGVWSGL 433
>NORM_BRAJA (Q89W72) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 466 Score = 31.2 bits (69), Expect = 3.4 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -1 Query: 447 VAYVNVGCYYFIGIPLGVFMGFYLGLGAKGVWSG 346 +A+ +G Y+ + P+ + F+ GLGA GVW G Sbjct: 409 LAFAAIG-YWCVAFPVAWVLAFHTGLGAVGVWIG 441
>FLHB_BUCAI (P57334) Flagellar biosynthetic protein flhB| Length = 383 Score = 30.8 bits (68), Expect = 4.5 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%) Frame = -2 Query: 614 EKAYVLQNLNIMWDVCNLSLGQLARSLYRNSS----IPGTTK*SSY*LQVWLW 468 E A +QNL + ++ +S+ LARSLYR S IPG + + W+W Sbjct: 296 EAAIKIQNLALKHNISIISVPSLARSLYRYSEIGQYIPGPLYKAVAEVLAWVW 348
>BRSK2_HUMAN (Q8IWQ3) BR serine/threonine-protein kinase 2 (EC 2.7.11.1)| (Serine/threonine-protein kinase 29) (SAD1B) Length = 736 Score = 30.8 bits (68), Expect = 4.5 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = +2 Query: 326 SVPPITMPLQTPFAPRPR*KPMNTPSGMPMK**HPTFTYATNTCQPHPTATPVI 487 S P++ P TP P PR P+ TP G P+ H T P P ++P + Sbjct: 421 STSPLSSPRVTPH-PSPRGSPLPTPKGTPV---HTPKESPAGTPNPTPPSSPSV 470
>Y093_RHIME (O87394) Hypothetical transport protein R00093| Length = 465 Score = 25.0 bits (53), Expect(2) = 7.5 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -1 Query: 495 FLLITGVAVGCGWQVFVAYVNVGCYYFIGI 406 F IT + GW VA ++ G +Y++GI Sbjct: 192 FSAITSDPLPYGWVGIVASLHFGLWYYLGI 221 Score = 23.5 bits (49), Expect(2) = 7.5 Identities = 9/36 (25%), Positives = 17/36 (47%) Frame = -2 Query: 707 SVYVLNWKNHSNIWLNFTFM*IATTVAFIVCEKAYV 600 ++ L W N+ + TF + T +AF+ +V Sbjct: 144 AIMFLAWLNYRGVLATLTFNLVITAIAFLAIVALFV 179
>IR04_HCMVA (P09694) Hypothetical protein IRL4 (TRL4)| Length = 170 Score = 30.0 bits (66), Expect = 7.6 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +2 Query: 302 HNRMSVCNSVPPITMPLQTPFAPRPR*KPMNTPSGMP 412 H R+ VC + PP +P P P P P+ +P P Sbjct: 3 HARVYVCIASPPSRLPSAVPLPPPPAPPPLPSPPRYP 39
>HMRM_HAEIN (P45272) Multidrug resistance protein hmrM (Na(+)/drug antiporter)| (Multidrug-efflux transporter) Length = 464 Score = 29.6 bits (65), Expect = 10.0 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Frame = -1 Query: 507 NEIIFLLITGVAVGCGWQVFVAYVNVGCYYFIGIPLGVFMG----FYLGLGAKGVWSGMV 340 ++ I +++ G+ G + Y+ + Y+ IG+PLG +G + AKG W V Sbjct: 372 SDTIQMVVGGILRGYKDTKVILYITLFSYWVIGVPLGYTLGRTDWLVPHIDAKGFWIAFV 431 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,706,862 Number of Sequences: 219361 Number of extensions: 2166103 Number of successful extensions: 6784 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 5693 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6778 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7536258401 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
