ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags32o23 |
|---|---|
| Clone Library Name | barley_pub |
>PA2G4_HUMAN (Q9UQ80) Proliferation-associated protein 2G4 (Cell cycle protein| p38-2G4 homolog) (hG4-1) (ErbB3-binding protein 1) Length = 393 Score = 128 bits (321), Expect = 2e-29 Identities = 71/147 (48%), Positives = 90/147 (61%), Gaps = 2/147 (1%) Frame = -2 Query: 661 KQTTIYKRAVDKNYHLKMKASRFIFSEISQKFPIMPFTARALE-EKRARLGLVECMNHEL 485 ++TTIYKR K Y LKMK SR FSE+ ++F MPFT RA E EK+AR+G+VEC HEL Sbjct: 241 QRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKHEL 300 Query: 484 LQPYPVLHEKQGDLVAHIKFTVLLMPNGSDKITSHPLQ-QLEPSKSIEDDAEIKAWLALG 308 LQP+ VL+EK+G+ VA KFTVLLMPNG +ITS P + L S+ DAE+KA L Sbjct: 301 LQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALLQSS 360 Query: 307 TKSXXXXXXXXXXXXXGDAAEAAEPME 227 + A + E +E Sbjct: 361 ASRKTQKKKKKKASKTAENATSGETLE 387
>PA2G4_MOUSE (P50580) Proliferation-associated protein 2G4| (Proliferation-associated protein 1) (Protein p38-2G4) (Mpp1) (IRES-specific cellular trans-acting factor 45 kDa) (ITAF45) Length = 393 Score = 127 bits (320), Expect = 2e-29 Identities = 71/147 (48%), Positives = 90/147 (61%), Gaps = 2/147 (1%) Frame = -2 Query: 661 KQTTIYKRAVDKNYHLKMKASRFIFSEISQKFPIMPFTARALE-EKRARLGLVECMNHEL 485 ++TTIYKR K Y LKMK SR FSE+ ++F MPFT RA E EK+AR+G+VEC HEL Sbjct: 241 QRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKHEL 300 Query: 484 LQPYPVLHEKQGDLVAHIKFTVLLMPNGSDKITSHPLQ-QLEPSKSIEDDAEIKAWLALG 308 LQP+ VL+EK+G+ VA KFTVLLMPNG +ITS P + L S+ DAE+KA L Sbjct: 301 LQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALLQSS 360 Query: 307 TKSXXXXXXXXXXXXXGDAAEAAEPME 227 + A + E +E Sbjct: 361 ASRKTQKKKKKKASKTVENATSGETLE 387
>CDB4_SCHPO (Q09184) Curved DNA-binding protein (42 kDa protein)| Length = 381 Score = 73.6 bits (179), Expect = 5e-13 Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 2/115 (1%) Frame = -2 Query: 655 TTIYKRAVDKNYHLKMKASRFIFSEISQKFPIMPFTARALE-EKRARLGLVECMNHELLQ 479 T IYK+ D Y LK++ASR ++SEI KF PF+ R + + R +GL EC +H+LL Sbjct: 247 TRIYKKT-DTTYMLKLQASRKVYSEIQTKFGPFPFSTRNISFDSRTNMGLNECTSHKLLF 305 Query: 478 PYPVLHEKQGDLVAHIKFTVLLMPNGSDKIT-SHPLQQLEPSKSIEDDAEIKAWL 317 PY VL +K G +VA T+ L G+ ++ S P + S +D EI A L Sbjct: 306 PYEVLLDKDGGIVAEFYSTIALTKKGTIILSDSEPKEDFIKSDKKVEDPEIVALL 360
>ARX1_SCHPO (O60180) Probable metalloprotease arx1 (EC 3.-.-.-) (Associated| with ribosomal export complex protein 1) Length = 417 Score = 60.5 bits (145), Expect = 4e-09 Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 4/111 (3%) Frame = -2 Query: 652 TIYKRAVDKNYHLKMKASRFIFSEISQKFPIMPFTARALEEKRARLGLVECMNHELLQPY 473 T+Y V+ +Y LK+KASR + SEI ++ + PF +L +R LGL E + +L P Sbjct: 288 TLYIHDVNVSYMLKLKASRSLLSEIKKEKSVFPFHFGSLSSERNLLGLRELTDRHILVPM 347 Query: 472 PVLHEKQGDLVAHIKFTVLLMPNGSDKI----TSHPLQQLEPSKSIEDDAE 332 PVL +++A + TV+ PN S + P ++ S+ED + Sbjct: 348 PVLISSPSNVIAREELTVITQPNPSSDLLCLTVPTPPSYVKSDFSLEDGTD 398
>AMPM_METJA (Q58725) Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase| M) Length = 294 Score = 43.1 bits (100), Expect = 7e-04 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = -2 Query: 616 LKMKASRFIFSEISQKFPIMPFTAR-ALEEKRARLGLVECMNHELLQPYPVLHEKQGDLV 440 +++ +R + IS+ +P +PF R L+ + RL L + + YP+L E++ +V Sbjct: 216 IRLPQARKLLDVISKNYPYLPFAERWVLKNESERLALNSLIRASCIYGYPILKERENGIV 275 Query: 439 AHIKFTVLLMPNGSDKIT 386 + T+L+ NG + T Sbjct: 276 GQAEHTILITENGVEITT 293
>ARX1_YARLI (Q6CCY2) Probable metalloprotease ARX1 (EC 3.-.-.-) (Associated| with ribosomal export complex protein 1) Length = 484 Score = 43.1 bits (100), Expect = 7e-04 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -2 Query: 646 YKRAVDKNYHLKMKASRFIFSEISQKFPIMPFTARALEEK--RARLGLVECMNHELLQPY 473 Y R Y LK++ASR + S++ + PF +E +ARLGL E + H++L P Sbjct: 318 YGRDFSVTYGLKIQASRKLLSQLEATTSVYPFKLSHVESNVAKARLGLGEILAHQILVPI 377 Query: 472 PVLHEKQGDLVAHIKFT 422 PV K L A +F+ Sbjct: 378 PVKVAKFVPLAALYEFS 394
>AMPM_METTH (O27355) Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase| M) Length = 299 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 4/81 (4%) Frame = -2 Query: 616 LKMKASRFIFSEISQKFPIMPFTARALEE----KRARLGLVECMNHELLQPYPVLHEKQG 449 L++ +R + +I +++ +PF R LEE KR + + + PY VL EK G Sbjct: 218 LRLVHARRVLGKIREEYHALPFAQRWLEEYFDAKRLNASMRMLIQSRAIYPYHVLREKSG 277 Query: 448 DLVAHIKFTVLLMPNGSDKIT 386 +VA + TV++ +G IT Sbjct: 278 AMVAQWEHTVIVEEDGCTVIT 298
>AMPM_ARCFU (O28438) Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase| M) Length = 291 Score = 38.1 bits (87), Expect = 0.024 Identities = 21/73 (28%), Positives = 40/73 (54%) Frame = -2 Query: 616 LKMKASRFIFSEISQKFPIMPFTARALEEKRARLGLVECMNHELLQPYPVLHEKQGDLVA 437 ++MK +R I E+ + + +PF R L +K + + + +L+ YPVL E G LV+ Sbjct: 215 VRMKMAREILKEVEENYKTLPFAKRWL-KKAPDIIISKLAREGVLRAYPVLTEVSGGLVS 273 Query: 436 HIKFTVLLMPNGS 398 + T+++ G+ Sbjct: 274 QWEHTLIVEDGGA 286
>AMPM_PYRHO (O58362) Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase| M) Length = 295 Score = 37.7 bits (86), Expect = 0.031 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Frame = -2 Query: 616 LKMKASRFIFSEISQKFPIMPFTARALE----EKRARLGLVECMNHELLQPYPVLHEKQG 449 ++M +RF+ ++I +++ +PF R L+ E + +L L L YPVL E +G Sbjct: 214 VRMAQARFLLAKIKREYKTLPFAYRWLQGEMPEGQLKLALRSLERSGALYGYPVLREIRG 273 Query: 448 DLVAHIKFTVLL 413 +V + T+++ Sbjct: 274 GMVTQFEHTIIV 285
>AMP2B_ARATH (Q56Y85) Methionine aminopeptidase 2B (EC 3.4.11.18) (MetAP 2B)| (MAP 2B) (Peptidase M 2B) Length = 439 Score = 35.8 bits (81), Expect = 0.12 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Frame = -2 Query: 616 LKMKASRFIFSEISQKFPIMPFTARALE---EKRARLGLVECMNHELLQPYPVLHEKQGD 446 L++ ++ + + I++ F + F R L+ E + + L + ++QPYP L + +G Sbjct: 355 LRLPRAKQLLATINKNFSTLAFCRRYLDRIGETKYLMALKNLCDSGIVQPYPPLCDVKGS 414 Query: 445 LVAHIKFTVLLMP 407 V+ + T+LL P Sbjct: 415 YVSQFEHTILLRP 427
>AMPM_PYRAB (Q9UYT4) Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase| M) Length = 295 Score = 35.4 bits (80), Expect = 0.15 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Frame = -2 Query: 616 LKMKASRFIFSEISQKFPIMPFTARALE----EKRARLGLVECMNHELLQPYPVLHEKQG 449 ++M +RF+ ++I +++ +PF R L+ E + +L L L YPVL E + Sbjct: 214 VRMVQARFLLAKIKREYKTLPFAYRWLQGEMPEGQLKLALRTLEKSGALYGYPVLREIRN 273 Query: 448 DLVAHIKFTVLL 413 LV + T+++ Sbjct: 274 GLVTQFEHTIIV 285
>AMPM2_YEAST (P38174) Methionine aminopeptidase 2 (EC 3.4.11.18) (MetAP 2)| (Peptidase M 2) Length = 421 Score = 34.3 bits (77), Expect = 0.34 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%) Frame = -2 Query: 643 KRAVDKNYHLKMKASRFIFSEISQKFPIMPFTARALE---EKRARLGLVECMNHELLQPY 473 + A D + +++ + I + F +PF R L+ +++ L + H L+Q Y Sbjct: 328 RSAEDHQVMPTLDSAKNLLKTIDRNFGTLPFCRRYLDRLGQEKYLFALNNLVRHGLVQDY 387 Query: 472 PVLHEKQGDLVAHIKFTVLL 413 P L++ G A + T+LL Sbjct: 388 PPLNDIPGSYTAQFEHTILL 407
>AMPM_PYRFU (P56218) Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase| M) Length = 295 Score = 33.5 bits (75), Expect = 0.58 Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Frame = -2 Query: 616 LKMKASRFIFSEISQKFPIMPFTARALE----EKRARLGLVECMNHELLQPYPVLHEKQG 449 +++ +RF+ ++I +++ +PF R L+ E + +L L + YPVL E + Sbjct: 214 VRVAQARFLLAKIKREYGTLPFAYRWLQNDMPEGQLKLALKTLEKAGAIYGYPVLKEIRN 273 Query: 448 DLVAHIKFTVLL 413 +VA + T+++ Sbjct: 274 GIVAQFEHTIIV 285
>AMPM2_ENCIN (Q6XMH7) Methionine aminopeptidase 2 (EC 3.4.11.18) (MetAP 2)| (Peptidase M 2) (MetAP2) (MAP-2) Length = 358 Score = 33.5 bits (75), Expect = 0.58 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 13/101 (12%) Frame = -2 Query: 649 IYKRAVDKNYHLKMKASRFIFSE--------ISQKFPIMPFTARALEEKR-ARLGLVECM 497 I R+ ++ L + SR +F++ + F +PF+ R L+ G ++ + Sbjct: 253 INDRSPCSHFMLNVHKSRKLFNKDLIKVYEFVKSSFGTLPFSPRHLDHYNLVEGGSLKSV 312 Query: 496 N----HELLQPYPVLHEKQGDLVAHIKFTVLLMPNGSDKIT 386 N L PYP L++ G VA + TV L NG + +T Sbjct: 313 NLLTMMGLFTPYPPLNDIDGSKVAQFEHTVYLSENGKEILT 353
>ARX1_DEBHA (Q6BI90) Probable metalloprotease ARX1 (EC 3.-.-.-) (Associated| with ribosomal export complex protein 1) Length = 564 Score = 33.5 bits (75), Expect = 0.58 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 17/81 (20%) Frame = -2 Query: 658 QTTIYKRAVDKNYHLKMKASRFIFSEISQKFPIMPF----------------TARALEEK 527 ++TIY R NY L++K SR + +I ++F + PF A +E Sbjct: 344 KSTIYIRDYAVNYQLRLKNSRSLLGKIDKEFTVFPFKLSHTSPSFPATNSQDLATLKKEL 403 Query: 526 RA-RLGLVECMNHELLQPYPV 467 A +LGL E N L+ P+ Sbjct: 404 IANKLGLSELANRHLINAKPI 424
>ARX1_CANAL (Q5AI37) Probable metalloprotease ARX1 (EC 3.-.-.-) (Associated| with ribosomal export complex protein 1) Length = 564 Score = 33.1 bits (74), Expect = 0.76 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 24/88 (27%) Frame = -2 Query: 658 QTTIYKRAVDKNYHLKMKASRFIFSEISQKFPIMPF------------------------ 551 +++I+ R + LK+K S+ + EI ++F + PF Sbjct: 336 KSSIFIRDFAVTHQLKLKTSKKLLGEIDRQFSVYPFKLDYASKNFPINTESSEDEIKQQI 395 Query: 550 TARALEEKRARLGLVECMNHELLQPYPV 467 A + K RLG E N L+QP P+ Sbjct: 396 AAIGQDMKSNRLGAAELSNRHLIQPKPI 423
>AMPM2_RAT (P38062) Methionine aminopeptidase 2 (EC 3.4.11.18) (MetAP 2)| (Peptidase M 2) (Initiation factor 2-associated 67 kDa glycoprotein) (p67) (p67eIF2) Length = 478 Score = 32.3 bits (72), Expect = 1.3 Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Frame = -2 Query: 616 LKMKASRFIFSEISQKFPIMPFTARALE---EKRARLGLVECMNHELLQPYPVLHEKQGD 446 +++ ++ + + I++ F + F R L+ E + + L + ++ PYP L + +G Sbjct: 394 IRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPPLCDIKGS 453 Query: 445 LVAHIKFTVLLMPNGSDKIT 386 A + T+LL P + ++ Sbjct: 454 YTAQFEHTILLRPTCKEVVS 473
>AMPM2_MOUSE (O08663) Methionine aminopeptidase 2 (EC 3.4.11.18) (MetAP 2)| (Peptidase M 2) (Initiation factor 2-associated 67 kDa glycoprotein) (p67) (p67eIF2) Length = 478 Score = 32.3 bits (72), Expect = 1.3 Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Frame = -2 Query: 616 LKMKASRFIFSEISQKFPIMPFTARALE---EKRARLGLVECMNHELLQPYPVLHEKQGD 446 +++ ++ + + I++ F + F R L+ E + + L + ++ PYP L + +G Sbjct: 394 IRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPPLCDIKGS 453 Query: 445 LVAHIKFTVLLMPNGSDKIT 386 A + T+LL P + ++ Sbjct: 454 YTAQFEHTILLRPTCKEVVS 473
>AMPM2_HUMAN (P50579) Methionine aminopeptidase 2 (EC 3.4.11.18) (MetAP 2)| (Peptidase M 2) (Initiation factor 2-associated 67 kDa glycoprotein) (p67) (p67eIF2) Length = 478 Score = 32.3 bits (72), Expect = 1.3 Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Frame = -2 Query: 616 LKMKASRFIFSEISQKFPIMPFTARALE---EKRARLGLVECMNHELLQPYPVLHEKQGD 446 +++ ++ + + I++ F + F R L+ E + + L + ++ PYP L + +G Sbjct: 394 IRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPPLCDIKGS 453 Query: 445 LVAHIKFTVLLMPNGSDKIT 386 A + T+LL P + ++ Sbjct: 454 YTAQFEHTILLRPTCKEVVS 473
>MASS1_BRARE (Q6JAN0) Monogenic audiogenic seizure susceptibility protein 1| homolog precursor (Very large G-protein coupled receptor 1) Length = 6199 Score = 31.6 bits (70), Expect = 2.2 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -2 Query: 592 IFSEISQKFPIMPFTARALEEKRARLGLVECMNHELLQPYPVL 464 IF+++S KF +P TAR E+ R V + E +P P+L Sbjct: 2131 IFADVSVKFRAVPLTARVGEDYRVASSDVVLLEGESSKPVPIL 2173
>AMP2A_ARATH (Q9FV49) Methionine aminopeptidase 2A (EC 3.4.11.18) (MetAP 2A)| (MAP 2A) (Peptidase M 2A) Length = 441 Score = 30.8 bits (68), Expect = 3.8 Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 8/89 (8%) Frame = -2 Query: 628 KNYH-----LKMKASRFIFSEISQKFPIMPFTARALE---EKRARLGLVECMNHELLQPY 473 KNY L++ ++ + + I++ F + F R L+ E + + L + +++P Sbjct: 348 KNYDVGHVPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKYLMALKNLCDSGIIEPC 407 Query: 472 PVLHEKQGDLVAHIKFTVLLMPNGSDKIT 386 P + + +G ++ + T+LL P + I+ Sbjct: 408 PPVCDVKGSYISQFEHTILLRPTCKEIIS 436
>GUNB_NEOPA (Q12647) Endoglucanase B precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase B) (Cellulase B) Length = 473 Score = 29.6 bits (65), Expect = 8.4 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 8/49 (16%) Frame = +3 Query: 360 GSNCCSGCDVILSDPFGINNTVNLMWA--------TRSPCFSWRTGYGC 482 G +CC+GC+V +D G N W T C+S + GY C Sbjct: 398 GYSCCNGCEVEYTDSDGEWGVENGNWCGIKSSCSNTSRICWSEKLGYPC 446 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,635,540 Number of Sequences: 219361 Number of extensions: 1665692 Number of successful extensions: 3868 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3784 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3863 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6370891296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
