ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags32o16 |
|---|---|
| Clone Library Name | barley_pub |
>WBS14_CAEEL (P41846) WBSCR14 protein homolog (Mlx interactor)| Length = 1009 Score = 30.4 bits (67), Expect = 1.1 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Frame = +3 Query: 63 HSLVQNVYLKCIRNTLKLLIAIILTQKHFCWNKFNYEGIHVGAKQQSHAQEAISNL--LL 236 H N +L IRNT+ + T +H WNK V QSH + ++N L+ Sbjct: 436 HYSTNNSFLP-IRNTMTNQHHLGHTSQHSPWNKQQQSNFLVSLPHQSHVERILNNQPPLV 494 Query: 237 RPTHRSTL 260 P RS L Sbjct: 495 PPPSRSNL 502
>VGNB_CPSMV (P36312) Genome polyprotein B (RNA1 polyprotein) [Contains:| Protease cofactor (32 kDa protein); Putative helicase (EC 3.6.1.-) (NTP-binding protein) (NTB) (Membrane-binding protein) (58 kDa protein); Viral genome-linked protein (VPg); Picornai Length = 1858 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +2 Query: 230 VTATHAQINTTVAPCQLQWLNHRRKQGGECAQLQVQHESIYXQ 358 V AT +A C+ +W+ H +Q QL V+ ES+ Q Sbjct: 637 VEATFTSYGDLLAYCKNKWVEHNTEQEANLKQLGVKKESVAFQ 679
>TUAE_BACSU (O32270) Teichuronic acid biosynthesis protein tuaE| Length = 488 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -2 Query: 130 IIAISNFSVFLMHFKYTFCTRE*RFTCVIFLFVSCCF 20 ++A+ +FL+ F T+E F VI++ ++C F Sbjct: 40 VLAVLAIGLFLLTLATAFTTKERLFMAVIYILIACTF 76
>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)| Length = 2414 Score = 28.5 bits (62), Expect = 4.1 Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 15/109 (13%) Frame = +2 Query: 26 AGNEQKNYTSEPSLSRAKCILKMHQKHTEVAYCDNPN---PETFLLEQIQLRRYPCRSKT 196 + N+Q T P SR I + Q C N N P ++++ C+ KT Sbjct: 1716 SNNQQAAATQSPGDSRRLSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQHTKGCKRKT 1775 Query: 197 AEPCPGSYQQFVT----ATHAQINTTVAPCQL--------QWLNHRRKQ 307 CP Q A H Q N P L Q L HR +Q Sbjct: 1776 NGGCPICKQLIALCCYHAKHCQENKCPVPFCLNIKQKLRQQQLQHRLQQ 1824
>RL10_MYCMS (Q6MRX8) 50S ribosomal protein L10| Length = 165 Score = 28.5 bits (62), Expect = 4.1 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 10/137 (7%) Frame = +3 Query: 6 VGFREKQQETNKKITQVNLHSLVQNVYLKCIRNTLKL----------LIAIILTQKHFCW 155 V E + T K+T++ + +L QN+ +K +++L LI + Q F + Sbjct: 28 VAIAEYKHLTVAKMTELRVQALKQNIDIKVYKDSLVRRAAEELGLVDLIPFLTQQNVFIF 87 Query: 156 NKFNYEGIHVGAKQQSHAQEAISNLLLRPTHRSTLQ*LHVSCSG*TIGVNRVESVPSYRF 335 + + A + ++N + ++ T+G+N V S+PS Sbjct: 88 SN----------EDSISAAKLVANFAKKNEALKLKAGIYEGKVVDTVGINEVASLPSKEE 137 Query: 336 NMNPFTXSQLIPLKPXM 386 + F S L PL+ M Sbjct: 138 LYSMFASSLLYPLRKAM 154
>HIPK3_MOUSE (Q9ERH7) Homeodomain-interacting protein kinase 3 (EC 2.7.11.1)| (Fas-interacting serine/threonine-protein kinase) (FIST) (Nuclear body-associated kinase 3) (Nbak3) (Androgen receptor-interacting nuclear protein kinase) (ANPK) Length = 1192 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -2 Query: 298 PMVQPLQLTWSYCSVDLCVGRSNKLLIASWAWLCCFAP 185 P VQPLQ+ S GR+ ++LI +W + AP Sbjct: 658 PAVQPLQIRPGVLSQQTWSGRTQQMLIPAWQQVTPMAP 695
>NU5M_APILI (P34855) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 554 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/82 (21%), Positives = 36/82 (43%) Frame = -2 Query: 340 MLNL*LGTLSTLFTPMVQPLQLTWSYCSVDLCVGRSNKLLIASWAWLCCFAPTWIPS*LN 161 M+NL +GT+ T+ L LT + +++ + +K++ S + F+ + N Sbjct: 371 MINLIIGTIFTVSYSFRMILVLTSKFLMMNVIYSKEDKIMCISMMMMMIFSLIYSKLIFN 430 Query: 160 LFQQKCFWVRIIAISNFSVFLM 95 L + ++ I VF M Sbjct: 431 LMNFNLLGINLLMIYKLMVFKM 452
>COE1_RAT (Q63398) Transcription factor COE1 (OE-1) (O/E-1) (Early B-cell| factor) (Olfactory neuronal transcription factor) (Olf-1) Length = 584 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +3 Query: 6 VGFREKQQETNKKITQVNLHSLVQNVYLKCIRNTLKLLIAII 131 VGF EK++E N + T +H +Q +Y IR + +I Sbjct: 90 VGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYVRLI 131
>C26AA_BACTF (Q9X597) Pesticidal crystal protein cry26Aa (Insecticidal| delta-endotoxin CryXXVIA(a)) (Crystaline entomocidal protoxin) (131 kDa crystal protein) Length = 1163 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Frame = +3 Query: 3 TVGFREKQQETNK-KITQVNLHSLVQNVYLKCIRNTLKLLIAIILTQKHFCWNKFNYE 173 TV E Q TN +I ++ + L+QN + +RNTL + I T ++ +++ NY+ Sbjct: 952 TVCSGEASQLTNSSQILKIRNYDLIQNFRIFSLRNTLSIKFK-IYTITNYPYSRLNYD 1008
>UFO_MOUSE (Q00993) Tyrosine-protein kinase receptor UFO precursor (EC| 2.7.10.1) (Adhesion-related kinase) Length = 888 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/54 (27%), Positives = 25/54 (46%) Frame = +2 Query: 17 GKAAGNEQKNYTSEPSLSRAKCILKMHQKHTEVAYCDNPNPETFLLEQIQLRRY 178 GK G + E L++ ILK+ K ++A C E FL E + ++ + Sbjct: 533 GKTLGEGEFGAVMEGQLNQDDSILKVAVKTMKIAICTRSELEDFLSEAVCMKEF 586
>COE1_MOUSE (Q07802) Transcription factor COE1 (OE-1) (O/E-1) (Early B-cell| factor) Length = 591 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +3 Query: 6 VGFREKQQETNKKITQVNLHSLVQNVYLKCIRNTLKLLIAII 131 VGF EK++E N + T +H +Q +Y IR + +I Sbjct: 90 VGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYVRLI 131
>COE1_HUMAN (Q9UH73) Transcription factor COE1 (OE-1) (O/E-1) (Early B-cell| factor) Length = 591 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +3 Query: 6 VGFREKQQETNKKITQVNLHSLVQNVYLKCIRNTLKLLIAII 131 VGF EK++E N + T +H +Q +Y IR + +I Sbjct: 90 VGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYVRLI 131
>UFO_HUMAN (P30530) Tyrosine-protein kinase receptor UFO precursor (EC| 2.7.10.1) (AXL oncogene) Length = 887 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/54 (27%), Positives = 25/54 (46%) Frame = +2 Query: 17 GKAAGNEQKNYTSEPSLSRAKCILKMHQKHTEVAYCDNPNPETFLLEQIQLRRY 178 GK G + E L++ ILK+ K ++A C E FL E + ++ + Sbjct: 532 GKTLGEGEFGAVMEGQLNQDDSILKVAVKTMKIAICTRSELEDFLSEAVCMKEF 585
>HXT17_YEAST (P53631) Hexose transporter HXT17| Length = 564 Score = 28.1 bits (61), Expect = 5.3 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 18/98 (18%) Frame = -2 Query: 241 GRSNKLLIASWAWLCCFAPTWIP---------------S*LNLFQQKCFWVRIIAISNFS 107 G N +++ + ++ CFA TW P S C W+ I F+ Sbjct: 417 GAGNAMIVFTCFYIFCFATTWAPVAYIVVAESFPSKVKSRAMSISTACNWLWQFLIGFFT 476 Query: 106 VFL---MHFKYTFCTRE*RFTCVIFLFVSCCFSLKPTV 2 F+ +HF Y + C++ +F+ F L T+ Sbjct: 477 PFITGSIHFYYGYVF----VGCLVAMFLYVFFFLPETI 510
>HXT13_YEAST (P39924) Hexose transporter HXT13| Length = 564 Score = 28.1 bits (61), Expect = 5.3 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 18/98 (18%) Frame = -2 Query: 241 GRSNKLLIASWAWLCCFAPTWIP---------------S*LNLFQQKCFWVRIIAISNFS 107 G N +++ + ++ CFA TW P S C W+ I F+ Sbjct: 417 GAGNAMIVFTCFYIFCFATTWAPVAYIVVAESFPSKVKSRAMSISTACNWLWQFLIGFFT 476 Query: 106 VFL---MHFKYTFCTRE*RFTCVIFLFVSCCFSLKPTV 2 F+ +HF Y + C++ +F+ F L T+ Sbjct: 477 PFITGSIHFYYGYVF----VGCLVAMFLYVFFFLPETI 510
>RT11_CHOCR (P48941) Mitochondrial ribosomal protein S11| Length = 116 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = +3 Query: 99 RNTLKL-LIAIILTQKHFCWNKFNYEGIHVGAKQQSHAQEAISNLLLRPTHRSTLQ*LHV 275 +NT K+ LI+I + + NY+GIH+ K S ++ L+++ +STL L + Sbjct: 42 KNTKKVTLISITTVINYIKYKSVNYKGIHIRTKGFSKNKK----LVIKQLKQSTLNILSI 97 Query: 276 S 278 S Sbjct: 98 S 98
>RS15_MYCS5 (Q4A5K1) 30S ribosomal protein S15| Length = 88 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%) Frame = +2 Query: 68 SRAKCILKMHQKHTEVAYCDNPNPETFL--LEQIQLRR 175 SR + K+ Q+ T +AY +PET+L LE+ +LR+ Sbjct: 51 SRRGFLAKITQRKTLLAYLKKNDPETYLKCLEEFKLRK 88
>CLD4_HUMAN (O14493) Claudin-4 (Clostridium perfringens enterotoxin receptor)| (CPE-receptor) (CPE-R) (Williams-Beuren syndrome chromosome region 8 protein) Length = 209 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +1 Query: 229 CYCDPRTDQHYSSSMSAA 282 C C PRTD+ YS+ SAA Sbjct: 183 CNCPPRTDKPYSAKYSAA 200
>CLD4_CERAE (O19005) Claudin-4 (Clostridium perfringens enterotoxin receptor)| (CPE-receptor) (CPE-R) Length = 209 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +1 Query: 229 CYCDPRTDQHYSSSMSAA 282 C C PRTD+ YS+ SAA Sbjct: 183 CNCPPRTDKPYSAKYSAA 200
>NMT_MIMIV (Q5UR64) Putative glycylpeptide N-tetradecanoyltransferase (EC| 2.3.1.97) (Peptide N-myristoyltransferase) (Myristoyl-CoA:protein N-myristoyltransferase) (NMT) Length = 358 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Frame = -1 Query: 200 LLFCSDMDTFVIEFVPAKMFLG*DYRNKQLQCVSDAF*VYILHE-RVKVHLCNFF 39 +++ D + +++VP +G Y+NK + ++ F I+++ ++K+ NFF Sbjct: 67 IIYSRDFLYWYLKYVPNNFTIGLMYKNKLVGLITALFVDMIMYDNKIKIPYINFF 121
>DPOL_HBVWP (Q02314) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 763 Score = 27.3 bits (59), Expect = 9.1 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 12/120 (10%) Frame = +2 Query: 47 YTSEPSLSRAKCILKMHQKHTEVAYCDNPNP----------ETFLLEQIQLRRYPCRSKT 196 Y+ E L + ++K Q+H + +C P+ +Q +L P + Sbjct: 175 YSWEQELHHGRLVIKTSQRHGDEPFCSQPSGILSRSSVGPCIRSQFKQSRLGLQPHQGPL 234 Query: 197 AEPCPGSYQQFVTATHAQINTT--VAPCQLQWLNHRRKQGGECAQLQVQHESIYXQSAYS 370 A PG H+ V P + HR C H+S ++AYS Sbjct: 235 ATSQPGRSGSIWARVHSPTRRCFGVEPSGSGHIGHRASDASSCL-----HQSAVRKAAYS 289
>VATI_BORBU (O51118) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 608 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +3 Query: 57 NLHSLVQNVYLKCIRNTLKLLIAIILTQKHFCWNKFNYEGIHVG 188 ++HS+ Q +L CI L++ +IL+Q F Y I+ G Sbjct: 434 HIHSIAQIGWLMCIVGLYYLVLNLILSQSRFPMYNVVYNVIYFG 477
>TRFL_CAMDR (Q9TUM0) Lactotransferrin precursor (EC 3.4.21.-) (Lactoferrin)| Length = 708 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/66 (27%), Positives = 27/66 (40%) Frame = +2 Query: 44 NYTSEPSLSRAKCILKMHQKHTEVAYCDNPNPETFLLEQIQLRRYPCRSKTAEPCPGSYQ 223 N T +P C L + H V+ D + LEQ+ LR+ + CPG + Sbjct: 594 NGTRKPVTEAESCHLAVAPNHAVVSRID----KVAHLEQVLLRQQAHFGRNGRDCPGKFC 649 Query: 224 QFVTAT 241 F + T Sbjct: 650 LFQSKT 655 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,054,325 Number of Sequences: 219361 Number of extensions: 1076985 Number of successful extensions: 2876 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2768 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2875 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
