ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_467495.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.015
2ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group... 48 0.015
3ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group... 48 0.015
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.015
5dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.015
6dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.015
7dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
8dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
9dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
10dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mR... 48 0.015
11gb|AC113991.4| Mus musculus chromosome 3, clone RP24-138E17, com... 42 0.90
12gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, com... 42 0.90
13emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, OR... 42 0.90
14gb|AC134827.4| Mus musculus BAC clone RP24-470E5 from 5, complet... 40 3.6
15dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 3.6

>ref|XM_467495.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1577

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 35   aactcaaactcaaccctatgatagtaaa 62
            |||||||||||||||||||||| |||||
Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464



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>ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA
          Length = 1578

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 35   aactcaaactcaaccctatgatagtaaa 62
            |||||||||||||||||||||| |||||
Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465



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>ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA
          Length = 1619

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 35   aactcaaactcaaccctatgatagtaaa 62
            |||||||||||||||||||||| |||||
Sbjct: 1533 aactcaaactcaaccctatgatggtaaa 1506



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 35       aactcaaactcaaccctatgatagtaaa 62
                |||||||||||||||||||||| |||||
Sbjct: 29843527 aactcaaactcaaccctatgatggtaaa 29843500



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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2056_H01
          Length = 123428

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 35    aactcaaactcaaccctatgatagtaaa 62
             |||||||||||||||||||||| |||||
Sbjct: 99872 aactcaaactcaaccctatgatggtaaa 99845



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>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OJ1008_D06
          Length = 112768

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 35  aactcaaactcaaccctatgatagtaaa 62
           |||||||||||||||||||||| |||||
Sbjct: 492 aactcaaactcaaccctatgatggtaaa 465



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>dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E01, full
            insert sequence
          Length = 1578

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 35   aactcaaactcaaccctatgatagtaaa 62
            |||||||||||||||||||||| |||||
Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465



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>dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011P12, full
            insert sequence
          Length = 1577

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 35   aactcaaactcaaccctatgatagtaaa 62
            |||||||||||||||||||||| |||||
Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464



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>dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045A20, full
            insert sequence
          Length = 1618

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 35   aactcaaactcaaccctatgatagtaaa 62
            |||||||||||||||||||||| |||||
Sbjct: 1532 aactcaaactcaaccctatgatggtaaa 1505



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>dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mRNA for ATP/ADP translocator,
            complete cds
          Length = 1564

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 35   aactcaaactcaaccctatgatagtaaa 62
            |||||||||||||||||||||| |||||
Sbjct: 1477 aactcaaactcaaccctatgatggtaaa 1450



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>gb|AC113991.4| Mus musculus chromosome 3, clone RP24-138E17, complete sequence
          Length = 138057

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 219   acagacttctcttgttcgtcatcat 243
             ||||||||||||||||||| |||||
Sbjct: 10958 acagacttctcttgttcgttatcat 10982



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>gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, complete sequence
          Length = 165247

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 219   acagacttctcttgttcgtcatcat 243
             ||||||||||||||||||| |||||
Sbjct: 22002 acagacttctcttgttcgttatcat 21978



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>emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, ORF14, ORF13, ORF12,
             ORF11, ORF10, ORF9, ORF8, ORF7, ORF6, ORF5, ORF4, ORF3,
             tubA gene, ORF2, tubZ gene, ORF1, tubB gene, tubC gene,
             tubD gene, tubE gene, tubF gene, ORF17, ORF18, ORF19,
             ORF20, tubG gene, ORF21, ORF22, ORF23 and ORF24, strain An
             d48
          Length = 82868

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 99    ctggagttcgatgcctccacc 119
             |||||||||||||||||||||
Sbjct: 45484 ctggagttcgatgcctccacc 45504



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>gb|AC134827.4| Mus musculus BAC clone RP24-470E5 from 5, complete sequence
          Length = 193811

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     atgatagtaaatgttttgag 71
              ||||||||||||||||||||
Sbjct: 152272 atgatagtaaatgttttgag 152253



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>dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04G24, TM0060,
             complete sequence
          Length = 123078

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 27    catactcgaactcaaactcaaccc 50
             ||||||| ||||||||||||||||
Sbjct: 48909 catactcaaactcaaactcaaccc 48932


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,079,700
Number of Sequences: 3902068
Number of extensions: 2079700
Number of successful extensions: 38650
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38603
Number of HSP's gapped (non-prelim): 47
length of query: 273
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 251
effective length of database: 17,147,199,772
effective search space: 4303947142772
effective search space used: 4303947142772
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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