| Clone Name | rbags33d06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467495.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1577 Score = 48.1 bits (24), Expect = 0.015 Identities = 27/28 (96%) Strand = Plus / Minus Query: 35 aactcaaactcaaccctatgatagtaaa 62 |||||||||||||||||||||| ||||| Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464
>ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA Length = 1578 Score = 48.1 bits (24), Expect = 0.015 Identities = 27/28 (96%) Strand = Plus / Minus Query: 35 aactcaaactcaaccctatgatagtaaa 62 |||||||||||||||||||||| ||||| Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465
>ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA Length = 1619 Score = 48.1 bits (24), Expect = 0.015 Identities = 27/28 (96%) Strand = Plus / Minus Query: 35 aactcaaactcaaccctatgatagtaaa 62 |||||||||||||||||||||| ||||| Sbjct: 1533 aactcaaactcaaccctatgatggtaaa 1506
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.015 Identities = 27/28 (96%) Strand = Plus / Minus Query: 35 aactcaaactcaaccctatgatagtaaa 62 |||||||||||||||||||||| ||||| Sbjct: 29843527 aactcaaactcaaccctatgatggtaaa 29843500
>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2056_H01 Length = 123428 Score = 48.1 bits (24), Expect = 0.015 Identities = 27/28 (96%) Strand = Plus / Minus Query: 35 aactcaaactcaaccctatgatagtaaa 62 |||||||||||||||||||||| ||||| Sbjct: 99872 aactcaaactcaaccctatgatggtaaa 99845
>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_D06 Length = 112768 Score = 48.1 bits (24), Expect = 0.015 Identities = 27/28 (96%) Strand = Plus / Minus Query: 35 aactcaaactcaaccctatgatagtaaa 62 |||||||||||||||||||||| ||||| Sbjct: 492 aactcaaactcaaccctatgatggtaaa 465
>dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E01, full insert sequence Length = 1578 Score = 48.1 bits (24), Expect = 0.015 Identities = 27/28 (96%) Strand = Plus / Minus Query: 35 aactcaaactcaaccctatgatagtaaa 62 |||||||||||||||||||||| ||||| Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465
>dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011P12, full insert sequence Length = 1577 Score = 48.1 bits (24), Expect = 0.015 Identities = 27/28 (96%) Strand = Plus / Minus Query: 35 aactcaaactcaaccctatgatagtaaa 62 |||||||||||||||||||||| ||||| Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464
>dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045A20, full insert sequence Length = 1618 Score = 48.1 bits (24), Expect = 0.015 Identities = 27/28 (96%) Strand = Plus / Minus Query: 35 aactcaaactcaaccctatgatagtaaa 62 |||||||||||||||||||||| ||||| Sbjct: 1532 aactcaaactcaaccctatgatggtaaa 1505
>dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mRNA for ATP/ADP translocator, complete cds Length = 1564 Score = 48.1 bits (24), Expect = 0.015 Identities = 27/28 (96%) Strand = Plus / Minus Query: 35 aactcaaactcaaccctatgatagtaaa 62 |||||||||||||||||||||| ||||| Sbjct: 1477 aactcaaactcaaccctatgatggtaaa 1450
>gb|AC113991.4| Mus musculus chromosome 3, clone RP24-138E17, complete sequence Length = 138057 Score = 42.1 bits (21), Expect = 0.90 Identities = 24/25 (96%) Strand = Plus / Plus Query: 219 acagacttctcttgttcgtcatcat 243 ||||||||||||||||||| ||||| Sbjct: 10958 acagacttctcttgttcgttatcat 10982
>gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, complete sequence Length = 165247 Score = 42.1 bits (21), Expect = 0.90 Identities = 24/25 (96%) Strand = Plus / Minus Query: 219 acagacttctcttgttcgtcatcat 243 ||||||||||||||||||| ||||| Sbjct: 22002 acagacttctcttgttcgttatcat 21978
>emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, ORF14, ORF13, ORF12, ORF11, ORF10, ORF9, ORF8, ORF7, ORF6, ORF5, ORF4, ORF3, tubA gene, ORF2, tubZ gene, ORF1, tubB gene, tubC gene, tubD gene, tubE gene, tubF gene, ORF17, ORF18, ORF19, ORF20, tubG gene, ORF21, ORF22, ORF23 and ORF24, strain An d48 Length = 82868 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 ctggagttcgatgcctccacc 119 ||||||||||||||||||||| Sbjct: 45484 ctggagttcgatgcctccacc 45504
>gb|AC134827.4| Mus musculus BAC clone RP24-470E5 from 5, complete sequence Length = 193811 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 atgatagtaaatgttttgag 71 |||||||||||||||||||| Sbjct: 152272 atgatagtaaatgttttgag 152253
>dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04G24, TM0060, complete sequence Length = 123078 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 catactcgaactcaaactcaaccc 50 ||||||| |||||||||||||||| Sbjct: 48909 catactcaaactcaaactcaaccc 48932 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,079,700 Number of Sequences: 3902068 Number of extensions: 2079700 Number of successful extensions: 38650 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38603 Number of HSP's gapped (non-prelim): 47 length of query: 273 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 251 effective length of database: 17,147,199,772 effective search space: 4303947142772 effective search space used: 4303947142772 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)