| Clone Name | rbags32o06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT008939.1| Triticum aestivum clone wdi1c.pk006.f3:fis, full insert mRNA sequence Length = 2700 Score = 884 bits (446), Expect = 0.0 Identities = 587/628 (93%), Gaps = 7/628 (1%) Strand = Plus / Minus Query: 28 caaacacaaaattggttctaatcgcgcaagacaggacacgctccaaaattccaggactcc 87 |||||||||||||| |||||| | | |||||| ||||| ||||||||||||||||||| Sbjct: 2470 caaacacaaaattgcttctaa--gtgtaagacaagacac--tccaaaattccaggactcc 2415 Query: 88 ctcgatgattcaatctatccca-acatcaaaatatatcaaatatagtatgtgccgacata 146 ||| ||||| ||||||| || ||||||||||||||||| |||||||||| ||||||| Sbjct: 2414 ctcaatgatccaatctacccttgacatcaaaatatatcaa-tatagtatgtttcgacata 2356 Query: 147 agagcactgtcctatgtcatctcagggtatcagtcagagtaagagaaccatcaggcgtac 206 ||||| | |||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct: 2355 agagcccagtcctatgtcatctcagggtatcagtcacag-aagagaaccatcaggcgtac 2297 Query: 207 aactgagccagatcatcttcatacgtcttcctgatcacctccctcttgagtttgagcgca 266 ||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2296 aactgcgccagatcgtcttcaaacgtcttcctgatcacctccctcttgagtttgagcgca 2237 Query: 267 gctgtgacgaggcccgactcgggggtccatggatctggcatcagcttgactttagctggt 326 || ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 2236 gccgtgacgaggcccgactcgggggtccatggatctggtatgagcttgactttggctggt 2177 Query: 327 gtctcgaacttctccagtcgtccttgctttgcagcctttgttaaagatccaagcacttct 386 ||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| Sbjct: 2176 gtctcgaacttctccagtcgtgcttgcttcgcagcctttgttaaagattcaagcacttct 2117 Query: 387 acaacagcctcttgcttctggcacaaatcagcgaaatcggtgtatgcaagtccttgctgc 446 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 2116 acaacagcctcttgcttctggcacaaatcagcaaaatcggtgtatgcaagtccttgctgc 2057 Query: 447 aatgcccacttttccagctcgttctgtgctgctaccacaagtgcaacacagtaactgtga 506 ||||||||| |||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 2056 aatgcccacctttcaagttcattctgtgctgctaccacaagtgcaacacagtaactgtga 1997 Query: 507 aaaggatcggcatggatcatgatgttctcaacatatgggttcatggccaatgcagcttcc 566 ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| Sbjct: 1996 aaaggatcggcatggatcatgatgttctcaacatatgggctcatagccaacgcagcttcc 1937 Query: 567 accttcccgagagatacgtattcaccatgttgaagcttcacgatatctttcttgcggtca 626 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1936 accttcccaagagatacgtattcaccatgttgaagcttcacgatatctttcttgcggtca 1877 Query: 627 atgatttcaaggcaaccatctggatgga 654 |||||||||||||| ||||||||||||| Sbjct: 1876 atgatttcaaggcagccatctggatgga 1849
>dbj|AK065718.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042P14, full insert sequence Length = 3309 Score = 404 bits (204), Expect = e-109 Identities = 396/460 (86%) Strand = Plus / Minus Query: 195 catcaggcgtacaactgagccagatcatcttcatacgtcttcctgatcacctccctcttg 254 ||||||||||| | | ||| |||||||| ||||| |||||||||| ||| ||||||||| Sbjct: 3060 catcaggcgtatagtttagcaagatcatcctcatatgtcttcctgagcacttccctcttg 3001 Query: 255 agtttgagcgcagctgtgacgaggcccgactcgggggtccatggatctggcatcagcttg 314 || ||||| ||||| ||||| ||||| ||||| ||||||||||| || | ||||||||| Sbjct: 3000 agcttgagggcagcagtgacaaggccagactccggggtccatggctcagatatcagcttg 2941 Query: 315 actttagctggtgtctcgaacttctccagtcgtccttgctttgcagcctttgttaaagat 374 | || || || |||| |||||||||||||| ||||||| |||||||||| || |||| Sbjct: 2940 atcttggccgggatctcaaacttctccagtcgcgcttgcttcgcagcctttgatagagat 2881 Query: 375 ccaagcacttctacaacagcctcttgcttctggcacaaatcagcgaaatcggtgtatgca 434 |||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| | Sbjct: 2880 ccaagcacttctttaacagcctctggcttctggcacaaatctacgaaatcggtgtatgta 2821 Query: 435 agtccttgctgcaatgcccacttttccagctcgttctgtgctgctaccacaagtgcaaca 494 | ||| |||||| | ||||| ||||||||||| || ||||| |||||||||||||||||| Sbjct: 2820 actccctgctgcgaagcccagttttccagctcattgtgtgcagctaccacaagtgcaaca 2761 Query: 495 cagtaactgtgaaaaggatcggcatggatcatgatgttctcaacatatgggttcatggcc 554 ||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||| | Sbjct: 2760 cagtaactgtggaaaggatcagcatggatcatgatgttctccacatatgggctcacaatc 2701 Query: 555 aatgcagcttccaccttcccgagagatacgtattcaccatgttgaagcttcacgatatct 614 | ||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct: 2700 agagcagcctccaccttcccgagagacacatattcaccatgttgaagcttcacaatatcc 2641 Query: 615 ttcttgcggtcaatgatttcaaggcaaccatctggatgga 654 || || |||||||||||||||||||| |||||||| |||| Sbjct: 2640 tttttacggtcaatgatttcaaggcagccatctgggtgga 2601
>dbj|AK065708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041H23, full insert sequence Length = 2497 Score = 404 bits (204), Expect = e-109 Identities = 396/460 (86%) Strand = Plus / Minus Query: 195 catcaggcgtacaactgagccagatcatcttcatacgtcttcctgatcacctccctcttg 254 ||||||||||| | | ||| |||||||| ||||| |||||||||| ||| ||||||||| Sbjct: 2248 catcaggcgtatagtttagcaagatcatcctcatatgtcttcctgagcacttccctcttg 2189 Query: 255 agtttgagcgcagctgtgacgaggcccgactcgggggtccatggatctggcatcagcttg 314 || ||||| ||||| ||||| ||||| ||||| ||||||||||| || | ||||||||| Sbjct: 2188 agcttgagggcagcagtgacaaggccagactccggggtccatggctcagatatcagcttg 2129 Query: 315 actttagctggtgtctcgaacttctccagtcgtccttgctttgcagcctttgttaaagat 374 | || || || |||| |||||||||||||| ||||||| |||||||||| || |||| Sbjct: 2128 atcttggccgggatctcaaacttctccagtcgcgcttgcttcgcagcctttgatagagat 2069 Query: 375 ccaagcacttctacaacagcctcttgcttctggcacaaatcagcgaaatcggtgtatgca 434 |||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| | Sbjct: 2068 ccaagcacttctttaacagcctctggcttctggcacaaatctacgaaatcggtgtatgta 2009 Query: 435 agtccttgctgcaatgcccacttttccagctcgttctgtgctgctaccacaagtgcaaca 494 | ||| |||||| | ||||| ||||||||||| || ||||| |||||||||||||||||| Sbjct: 2008 actccctgctgcgaagcccagttttccagctcattgtgtgcagctaccacaagtgcaaca 1949 Query: 495 cagtaactgtgaaaaggatcggcatggatcatgatgttctcaacatatgggttcatggcc 554 ||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||| | Sbjct: 1948 cagtaactgtggaaaggatcagcatggatcatgatgttctccacatatgggctcacaatc 1889 Query: 555 aatgcagcttccaccttcccgagagatacgtattcaccatgttgaagcttcacgatatct 614 | ||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct: 1888 agagcagcctccaccttcccgagagacacatattcaccatgttgaagcttcacaatatcc 1829 Query: 615 ttcttgcggtcaatgatttcaaggcaaccatctggatgga 654 || || |||||||||||||||||||| |||||||| |||| Sbjct: 1828 tttttacggtcaatgatttcaaggcagccatctgggtgga 1789
>dbj|AK061697.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-D01, full insert sequence Length = 1552 Score = 404 bits (204), Expect = e-109 Identities = 396/460 (86%) Strand = Plus / Minus Query: 195 catcaggcgtacaactgagccagatcatcttcatacgtcttcctgatcacctccctcttg 254 ||||||||||| | | ||| |||||||| ||||| |||||||||| ||| ||||||||| Sbjct: 1326 catcaggcgtatagtttagcaagatcatcctcatatgtcttcctgagcacttccctcttg 1267 Query: 255 agtttgagcgcagctgtgacgaggcccgactcgggggtccatggatctggcatcagcttg 314 || ||||| ||||| ||||| ||||| ||||| ||||||||||| || | ||||||||| Sbjct: 1266 agcttgagggcagcagtgacaaggccagactccggggtccatggctcagatatcagcttg 1207 Query: 315 actttagctggtgtctcgaacttctccagtcgtccttgctttgcagcctttgttaaagat 374 | || || || |||| |||||||||||||| ||||||| |||||||||| || |||| Sbjct: 1206 atcttggccgggatctcaaacttctccagtcgcgcttgcttcgcagcctttgatagagat 1147 Query: 375 ccaagcacttctacaacagcctcttgcttctggcacaaatcagcgaaatcggtgtatgca 434 |||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| | Sbjct: 1146 ccaagcacttctttaacagcctctggcttctggcacaaatctacgaaatcggtgtatgta 1087 Query: 435 agtccttgctgcaatgcccacttttccagctcgttctgtgctgctaccacaagtgcaaca 494 | ||| |||||| | ||||| ||||||||||| || ||||| |||||||||||||||||| Sbjct: 1086 actccctgctgcgaagcccagttttccagctcattgtgtgcagctaccacaagtgcaaca 1027 Query: 495 cagtaactgtgaaaaggatcggcatggatcatgatgttctcaacatatgggttcatggcc 554 ||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||| | Sbjct: 1026 cagtaactgtggaaaggatcagcatggatcatgatgttctccacatatgggctcacaatc 967 Query: 555 aatgcagcttccaccttcccgagagatacgtattcaccatgttgaagcttcacgatatct 614 | ||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct: 966 agagcagcctccaccttcccgagagacacatattcaccatgttgaagcttcacaatatcc 907 Query: 615 ttcttgcggtcaatgatttcaaggcaaccatctggatgga 654 || || |||||||||||||||||||| |||||||| |||| Sbjct: 906 tttttacggtcaatgatttcaaggcagccatctgggtgga 867
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 216 bits (109), Expect = 7e-53 Identities = 166/185 (89%) Strand = Plus / Minus Query: 361 cctttgttaaagatccaagcacttctacaacagcctcttgcttctggcacaaatcagcga 420 |||||| || |||||||||||||||| |||||||||| |||||||||||||||| ||| Sbjct: 3487600 cctttgatagagatccaagcacttctttaacagcctctggcttctggcacaaatctacga 3487541 Query: 421 aatcggtgtatgcaagtccttgctgcaatgcccacttttccagctcgttctgtgctgcta 480 |||||||||||| || ||| |||||| | ||||| ||||||||||| || ||||| |||| Sbjct: 3487540 aatcggtgtatgtaactccctgctgcgaagcccagttttccagctcattgtgtgcagcta 3487481 Query: 481 ccacaagtgcaacacagtaactgtgaaaaggatcggcatggatcatgatgttctcaacat 540 ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| Sbjct: 3487480 ccacaagtgcaacacagtaactgtggaaaggatcagcatggatcatgatgttctccacat 3487421 Query: 541 atggg 545 ||||| Sbjct: 3487420 atggg 3487416 Score = 111 bits (56), Expect = 3e-21 Identities = 80/88 (90%) Strand = Plus / Minus Query: 567 accttcccgagagatacgtattcaccatgttgaagcttcacgatatctttcttgcggtca 626 |||||||||||||| || ||||||||||||||||||||||| ||||| || || |||||| Sbjct: 3487325 accttcccgagagacacatattcaccatgttgaagcttcacaatatcctttttacggtca 3487266 Query: 627 atgatttcaaggcaaccatctggatgga 654 |||||||||||||| |||||||| |||| Sbjct: 3487265 atgatttcaaggcagccatctgggtgga 3487238 Score = 105 bits (53), Expect = 2e-19 Identities = 140/169 (82%) Strand = Plus / Minus Query: 195 catcaggcgtacaactgagccagatcatcttcatacgtcttcctgatcacctccctcttg 254 ||||||||||| | | ||| |||||||| ||||| |||||||||| ||| ||||||||| Sbjct: 3487938 catcaggcgtatagtttagcaagatcatcctcatatgtcttcctgagcacttccctcttg 3487879 Query: 255 agtttgagcgcagctgtgacgaggcccgactcgggggtccatggatctggcatcagcttg 314 || ||||| ||||| ||||| ||||| ||||| ||||||||||| || | ||||||||| Sbjct: 3487878 agcttgagggcagcagtgacaaggccagactccggggtccatggctcagatatcagcttg 3487819 Query: 315 actttagctggtgtctcgaacttctccagtcgtccttgctttgcagcct 363 | || || || |||| |||||||||||||| ||||||| ||||||| Sbjct: 3487818 atcttggccgggatctcaaacttctccagtcgcgcttgcttcgcagcct 3487770
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 216 bits (109), Expect = 7e-53 Identities = 166/185 (89%) Strand = Plus / Minus Query: 361 cctttgttaaagatccaagcacttctacaacagcctcttgcttctggcacaaatcagcga 420 |||||| || |||||||||||||||| |||||||||| |||||||||||||||| ||| Sbjct: 3487545 cctttgatagagatccaagcacttctttaacagcctctggcttctggcacaaatctacga 3487486 Query: 421 aatcggtgtatgcaagtccttgctgcaatgcccacttttccagctcgttctgtgctgcta 480 |||||||||||| || ||| |||||| | ||||| ||||||||||| || ||||| |||| Sbjct: 3487485 aatcggtgtatgtaactccctgctgcgaagcccagttttccagctcattgtgtgcagcta 3487426 Query: 481 ccacaagtgcaacacagtaactgtgaaaaggatcggcatggatcatgatgttctcaacat 540 ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| Sbjct: 3487425 ccacaagtgcaacacagtaactgtggaaaggatcagcatggatcatgatgttctccacat 3487366 Query: 541 atggg 545 ||||| Sbjct: 3487365 atggg 3487361 Score = 111 bits (56), Expect = 3e-21 Identities = 80/88 (90%) Strand = Plus / Minus Query: 567 accttcccgagagatacgtattcaccatgttgaagcttcacgatatctttcttgcggtca 626 |||||||||||||| || ||||||||||||||||||||||| ||||| || || |||||| Sbjct: 3487270 accttcccgagagacacatattcaccatgttgaagcttcacaatatcctttttacggtca 3487211 Query: 627 atgatttcaaggcaaccatctggatgga 654 |||||||||||||| |||||||| |||| Sbjct: 3487210 atgatttcaaggcagccatctgggtgga 3487183 Score = 105 bits (53), Expect = 2e-19 Identities = 140/169 (82%) Strand = Plus / Minus Query: 195 catcaggcgtacaactgagccagatcatcttcatacgtcttcctgatcacctccctcttg 254 ||||||||||| | | ||| |||||||| ||||| |||||||||| ||| ||||||||| Sbjct: 3487883 catcaggcgtatagtttagcaagatcatcctcatatgtcttcctgagcacttccctcttg 3487824 Query: 255 agtttgagcgcagctgtgacgaggcccgactcgggggtccatggatctggcatcagcttg 314 || ||||| ||||| ||||| ||||| ||||| ||||||||||| || | ||||||||| Sbjct: 3487823 agcttgagggcagcagtgacaaggccagactccggggtccatggctcagatatcagcttg 3487764 Query: 315 actttagctggtgtctcgaacttctccagtcgtccttgctttgcagcct 363 | || || || |||| |||||||||||||| ||||||| ||||||| Sbjct: 3487763 atcttggccgggatctcaaacttctccagtcgcgcttgcttcgcagcct 3487715
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103647 Score = 216 bits (109), Expect = 7e-53 Identities = 166/185 (89%) Strand = Plus / Minus Query: 361 cctttgttaaagatccaagcacttctacaacagcctcttgcttctggcacaaatcagcga 420 |||||| || |||||||||||||||| |||||||||| |||||||||||||||| ||| Sbjct: 2528 cctttgatagagatccaagcacttctttaacagcctctggcttctggcacaaatctacga 2469 Query: 421 aatcggtgtatgcaagtccttgctgcaatgcccacttttccagctcgttctgtgctgcta 480 |||||||||||| || ||| |||||| | ||||| ||||||||||| || ||||| |||| Sbjct: 2468 aatcggtgtatgtaactccctgctgcgaagcccagttttccagctcattgtgtgcagcta 2409 Query: 481 ccacaagtgcaacacagtaactgtgaaaaggatcggcatggatcatgatgttctcaacat 540 ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| Sbjct: 2408 ccacaagtgcaacacagtaactgtggaaaggatcagcatggatcatgatgttctccacat 2349 Query: 541 atggg 545 ||||| Sbjct: 2348 atggg 2344 Score = 111 bits (56), Expect = 3e-21 Identities = 80/88 (90%) Strand = Plus / Minus Query: 567 accttcccgagagatacgtattcaccatgttgaagcttcacgatatctttcttgcggtca 626 |||||||||||||| || ||||||||||||||||||||||| ||||| || || |||||| Sbjct: 2253 accttcccgagagacacatattcaccatgttgaagcttcacaatatcctttttacggtca 2194 Query: 627 atgatttcaaggcaaccatctggatgga 654 |||||||||||||| |||||||| |||| Sbjct: 2193 atgatttcaaggcagccatctgggtgga 2166 Score = 105 bits (53), Expect = 2e-19 Identities = 140/169 (82%) Strand = Plus / Minus Query: 195 catcaggcgtacaactgagccagatcatcttcatacgtcttcctgatcacctccctcttg 254 ||||||||||| | | ||| |||||||| ||||| |||||||||| ||| ||||||||| Sbjct: 2866 catcaggcgtatagtttagcaagatcatcctcatatgtcttcctgagcacttccctcttg 2807 Query: 255 agtttgagcgcagctgtgacgaggcccgactcgggggtccatggatctggcatcagcttg 314 || ||||| ||||| ||||| ||||| ||||| ||||||||||| || | ||||||||| Sbjct: 2806 agcttgagggcagcagtgacaaggccagactccggggtccatggctcagatatcagcttg 2747 Query: 315 actttagctggtgtctcgaacttctccagtcgtccttgctttgcagcct 363 | || || || |||| |||||||||||||| ||||||| ||||||| Sbjct: 2746 atcttggccgggatctcaaacttctccagtcgcgcttgcttcgcagcct 2698
>emb|AL713902.2|CNS07YQ2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 116371 Score = 216 bits (109), Expect = 7e-53 Identities = 166/185 (89%) Strand = Plus / Plus Query: 361 cctttgttaaagatccaagcacttctacaacagcctcttgcttctggcacaaatcagcga 420 |||||| || |||||||||||||||| |||||||||| |||||||||||||||| ||| Sbjct: 44315 cctttgatagagatccaagcacttctttaacagcctctggcttctggcacaaatctacga 44374 Query: 421 aatcggtgtatgcaagtccttgctgcaatgcccacttttccagctcgttctgtgctgcta 480 |||||||||||| || ||| |||||| | ||||| ||||||||||| || ||||| |||| Sbjct: 44375 aatcggtgtatgtaactccctgctgcgaagcccagttttccagctcattgtgtgcagcta 44434 Query: 481 ccacaagtgcaacacagtaactgtgaaaaggatcggcatggatcatgatgttctcaacat 540 ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| Sbjct: 44435 ccacaagtgcaacacagtaactgtggaaaggatcagcatggatcatgatgttctccacat 44494 Query: 541 atggg 545 ||||| Sbjct: 44495 atggg 44499 Score = 111 bits (56), Expect = 3e-21 Identities = 80/88 (90%) Strand = Plus / Plus Query: 567 accttcccgagagatacgtattcaccatgttgaagcttcacgatatctttcttgcggtca 626 |||||||||||||| || ||||||||||||||||||||||| ||||| || || |||||| Sbjct: 44590 accttcccgagagacacatattcaccatgttgaagcttcacaatatcctttttacggtca 44649 Query: 627 atgatttcaaggcaaccatctggatgga 654 |||||||||||||| |||||||| |||| Sbjct: 44650 atgatttcaaggcagccatctgggtgga 44677 Score = 105 bits (53), Expect = 2e-19 Identities = 140/169 (82%) Strand = Plus / Plus Query: 195 catcaggcgtacaactgagccagatcatcttcatacgtcttcctgatcacctccctcttg 254 ||||||||||| | | ||| |||||||| ||||| |||||||||| ||| ||||||||| Sbjct: 43977 catcaggcgtatagtttagcaagatcatcctcatatgtcttcctgagcacttccctcttg 44036 Query: 255 agtttgagcgcagctgtgacgaggcccgactcgggggtccatggatctggcatcagcttg 314 || ||||| ||||| ||||| ||||| ||||| ||||||||||| || | ||||||||| Sbjct: 44037 agcttgagggcagcagtgacaaggccagactccggggtccatggctcagatatcagcttg 44096 Query: 315 actttagctggtgtctcgaacttctccagtcgtccttgctttgcagcct 363 | || || || |||| |||||||||||||| ||||||| ||||||| Sbjct: 44097 atcttggccgggatctcaaacttctccagtcgcgcttgcttcgcagcct 44145
>dbj|AK064208.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-E08, full insert sequence Length = 1382 Score = 133 bits (67), Expect = 8e-28 Identities = 148/175 (84%) Strand = Plus / Minus Query: 478 ctaccacaagtgcaacacagtaactgtgaaaaggatcggcatggatcatgatgttctcaa 537 |||| ||||||||||| ||||| |||| || || || ||||||||||||||||| |||| Sbjct: 811 ctacaacaagtgcaacgcagtagttgtggaaggggtcagcatggatcatgatgttgtcaa 752 Query: 538 catatgggttcatggccaatgcagcttccaccttcccgagagatacgtattcaccatgtt 597 |||||||| || ||| ||||| |||||||| || | |||||| ||||||||||||| Sbjct: 751 catatgggcacacactcaaagcagcctccacctttcctaaagatacatattcaccatgtt 692 Query: 598 gaagcttcacgatatctttcttgcggtcaatgatttcaaggcaaccatctggatg 652 ||||||| || || || ||||| |||||||| ||||||||||||||||||||||| Sbjct: 691 gaagcttgactatgtccttcttacggtcaataatttcaaggcaaccatctggatg 637 Score = 117 bits (59), Expect = 5e-23 Identities = 155/187 (82%) Strand = Plus / Minus Query: 219 tcatcttcatacgtcttcctgatcacctccctcttgagtttgagcgcagctgtgacgagg 278 ||||| || |||| |||| |||| ||||||||||||| ||||| ||||| |||||||| Sbjct: 1070 tcatcctcgtacgccttcttgatggcctccctcttgagcttgagggcagccgtgacgagt 1011 Query: 279 cccgactcgggggtccatggatctggcatcagcttgactttagctggtgtctcgaacttc 338 || ||||| ||||||||||| || |||| |||||||||||| ||||| |||| |||||| Sbjct: 1010 cctgactctggggtccatggctccggcaccagcttgactttggctgggatctcaaacttc 951 Query: 339 tccagtcgtccttgctttgcagcctttgttaaagatccaagcacttctacaacagcctct 398 ||||| || ||||||| |||||||||| |||| || ||| |||||| |||| |||| Sbjct: 950 tccagccgcgcttgcttggcagcctttgctaaacattgaaggacttctttgacagtctct 891 Query: 399 tgcttct 405 ||||||| Sbjct: 890 tgcttct 884
>gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence Length = 161073 Score = 105 bits (53), Expect = 2e-19 Identities = 122/145 (84%) Strand = Plus / Plus Query: 219 tcatcttcatacgtcttcctgatcacctccctcttgagtttgagcgcagctgtgacgagg 278 ||||| || |||| |||| |||| ||||||||||||| ||||| ||||| |||||||| Sbjct: 56373 tcatcctcgtacgccttcttgatggcctccctcttgagcttgagggcagccgtgacgagt 56432 Query: 279 cccgactcgggggtccatggatctggcatcagcttgactttagctggtgtctcgaacttc 338 || ||||| ||||||||||| || |||| |||||||||||| ||||| |||| |||||| Sbjct: 56433 cctgactctggggtccatggctccggcaccagcttgactttggctgggatctcaaacttc 56492 Query: 339 tccagtcgtccttgctttgcagcct 363 ||||| || ||||||| ||||||| Sbjct: 56493 tccagccgcgcttgcttggcagcct 56517 Score = 93.7 bits (47), Expect = 7e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 578 agatacgtattcaccatgttgaagcttcacgatatctttcttgcggtcaatgatttcaag 637 |||||| |||||||||||||||||||| || || || ||||| |||||||| |||||||| Sbjct: 57382 agatacatattcaccatgttgaagcttgactatgtccttcttacggtcaataatttcaag 57441 Query: 638 gcaaccatctggatg 652 ||||||||||||||| Sbjct: 57442 gcaaccatctggatg 57456 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 478 ctaccacaagtgcaacacagtaactgtgaaaaggatcggcatggatcatgatgttctcaa 537 |||| ||||||||||| ||||| |||| || || || ||||||||||||||||| |||| Sbjct: 57209 ctacaacaagtgcaacgcagtagttgtggaaggggtcagcatggatcatgatgttgtcaa 57268 Query: 538 catatggg 545 |||||||| Sbjct: 57269 catatggg 57276
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 105 bits (53), Expect = 2e-19 Identities = 122/145 (84%) Strand = Plus / Minus Query: 219 tcatcttcatacgtcttcctgatcacctccctcttgagtttgagcgcagctgtgacgagg 278 ||||| || |||| |||| |||| ||||||||||||| ||||| ||||| |||||||| Sbjct: 3357921 tcatcctcgtacgccttcttgatggcctccctcttgagcttgagggcagccgtgacgagt 3357862 Query: 279 cccgactcgggggtccatggatctggcatcagcttgactttagctggtgtctcgaacttc 338 || ||||| ||||||||||| || |||| |||||||||||| ||||| |||| |||||| Sbjct: 3357861 cctgactctggggtccatggctccggcaccagcttgactttggctgggatctcaaacttc 3357802 Query: 339 tccagtcgtccttgctttgcagcct 363 ||||| || ||||||| ||||||| Sbjct: 3357801 tccagccgcgcttgcttggcagcct 3357777 Score = 93.7 bits (47), Expect = 7e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 578 agatacgtattcaccatgttgaagcttcacgatatctttcttgcggtcaatgatttcaag 637 |||||| |||||||||||||||||||| || || || ||||| |||||||| |||||||| Sbjct: 3356912 agatacatattcaccatgttgaagcttgactatgtccttcttacggtcaataatttcaag 3356853 Query: 638 gcaaccatctggatg 652 ||||||||||||||| Sbjct: 3356852 gcaaccatctggatg 3356838 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 478 ctaccacaagtgcaacacagtaactgtgaaaaggatcggcatggatcatgatgttctcaa 537 |||| ||||||||||| ||||| |||| || || || ||||||||||||||||| |||| Sbjct: 3357085 ctacaacaagtgcaacgcagtagttgtggaaggggtcagcatggatcatgatgttgtcaa 3357026 Query: 538 catatggg 545 |||||||| Sbjct: 3357025 catatggg 3357018
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 105 bits (53), Expect = 2e-19 Identities = 122/145 (84%) Strand = Plus / Minus Query: 219 tcatcttcatacgtcttcctgatcacctccctcttgagtttgagcgcagctgtgacgagg 278 ||||| || |||| |||| |||| ||||||||||||| ||||| ||||| |||||||| Sbjct: 3366626 tcatcctcgtacgccttcttgatggcctccctcttgagcttgagggcagccgtgacgagt 3366567 Query: 279 cccgactcgggggtccatggatctggcatcagcttgactttagctggtgtctcgaacttc 338 || ||||| ||||||||||| || |||| |||||||||||| ||||| |||| |||||| Sbjct: 3366566 cctgactctggggtccatggctccggcaccagcttgactttggctgggatctcaaacttc 3366507 Query: 339 tccagtcgtccttgctttgcagcct 363 ||||| || ||||||| ||||||| Sbjct: 3366506 tccagccgcgcttgcttggcagcct 3366482 Score = 93.7 bits (47), Expect = 7e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 578 agatacgtattcaccatgttgaagcttcacgatatctttcttgcggtcaatgatttcaag 637 |||||| |||||||||||||||||||| || || || ||||| |||||||| |||||||| Sbjct: 3365617 agatacatattcaccatgttgaagcttgactatgtccttcttacggtcaataatttcaag 3365558 Query: 638 gcaaccatctggatg 652 ||||||||||||||| Sbjct: 3365557 gcaaccatctggatg 3365543 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 478 ctaccacaagtgcaacacagtaactgtgaaaaggatcggcatggatcatgatgttctcaa 537 |||| ||||||||||| ||||| |||| || || || ||||||||||||||||| |||| Sbjct: 3365790 ctacaacaagtgcaacgcagtagttgtggaaggggtcagcatggatcatgatgttgtcaa 3365731 Query: 538 catatggg 545 |||||||| Sbjct: 3365730 catatggg 3365723
>ref|XM_858064.1| PREDICTED: Canis familiaris similar to acyl-CoA synthetase long-chain family member 4 isoform 2, transcript variant 4 (LOC481018), mRNA Length = 2191 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 557 tgcagcttccaccttcccgagagatacgtattc 589 ||||||||||||||||||||||||||| ||||| Sbjct: 1813 tgcagcttccaccttcccgagagatacatattc 1781
>ref|XM_858039.1| PREDICTED: Canis familiaris similar to acyl-CoA synthetase long-chain family member 4 isoform 2, transcript variant 3 (LOC481018), mRNA Length = 2151 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 557 tgcagcttccaccttcccgagagatacgtattc 589 ||||||||||||||||||||||||||| ||||| Sbjct: 1773 tgcagcttccaccttcccgagagatacatattc 1741
>ref|XM_538140.2| PREDICTED: Canis familiaris similar to acyl-CoA synthetase long-chain family member 4 isoform 2, transcript variant 1 (LOC481018), mRNA Length = 2151 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 557 tgcagcttccaccttcccgagagatacgtattc 589 ||||||||||||||||||||||||||| ||||| Sbjct: 1773 tgcagcttccaccttcccgagagatacatattc 1741
>ref|NM_179603.1| Arabidopsis thaliana catalytic/ long-chain-fatty-acid-CoA ligase AT2G04350 transcript variant AT2G04350.2 mRNA, complete cds Length = 2384 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 564 tccaccttcccgagagatacgtattcaccatgttgaagcttcacgatatctttctt 619 |||||||| || || ||||||||||| ||||||||||| || || ||||||||||| Sbjct: 1888 tccacctttccaagggatacgtattccccatgttgaagtttaacaatatctttctt 1833
>ref|NM_126468.2| Arabidopsis thaliana catalytic/ long-chain-fatty-acid-CoA ligase AT2G04350 transcript variant AT2G04350.1 mRNA, complete cds Length = 2433 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 564 tccaccttcccgagagatacgtattcaccatgttgaagcttcacgatatctttctt 619 |||||||| || || ||||||||||| ||||||||||| || || ||||||||||| Sbjct: 1937 tccacctttccaagggatacgtattccccatgttgaagtttaacaatatctttctt 1882
>gb|BT009363.1| Triticum aestivum clone wlm96.pk027.k16:fis, full insert mRNA sequence Length = 824 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 486 agtgcaacacagtaactgtgaaaaggatcggcatggatcatgatgttctcaacata 541 ||||||||||||||||| ||||| ||||| |||| || ||||||||| || ||||| Sbjct: 682 agtgcaacacagtaactatgaaatggatcagcatagaccatgatgttgtccacata 627 Score = 56.0 bits (28), Expect = 2e-04 Identities = 73/88 (82%) Strand = Plus / Minus Query: 567 accttcccgagagatacgtattcaccatgttgaagcttcacgatatctttcttgcggtca 626 ||||| || |||||||| ||||| ||||||||||| || || || ||||| || | ||| Sbjct: 601 accttgccaagagatacatattctccatgttgaagttttactatgtcttttttcctgtcg 542 Query: 627 atgatttcaaggcaaccatctggatgga 654 |||||||||| ||| ||||| ||||||| Sbjct: 541 atgatttcaacgcatccatcaggatgga 514
>gb|AF503758.1| Arabidopsis thaliana long chain acyl-CoA synthetase 8 (LACS8) mRNA, complete cds Length = 2163 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 564 tccaccttcccgagagatacgtattcaccatgttgaagcttcacgatatctttctt 619 |||||||| || || ||||||||||| ||||||||||| || || ||||||||||| Sbjct: 1796 tccacctttccaagggatacgtattccccatgttgaagtttaacaatatctttctt 1741
>gb|AY052664.1| Arabidopsis thaliana T23O15.3/T23O15.3 mRNA, complete cds Length = 2378 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 564 tccaccttcccgagagatacgtattcaccatgttgaagcttcacgatatctttctt 619 |||||||| || || ||||||||||| ||||||||||| || || ||||||||||| Sbjct: 1902 tccacctttccaagggatacgtattccccatgttgaagtttaacaatatctttctt 1847
>gb|BT002288.1| Arabidopsis thaliana At2g04350/T23O15.3 mRNA, complete cds Length = 2163 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 564 tccaccttcccgagagatacgtattcaccatgttgaagcttcacgatatctttctt 619 |||||||| || || ||||||||||| ||||||||||| || || ||||||||||| Sbjct: 1796 tccacctttccaagggatacgtattccccatgttgaagtttaacaatatctttctt 1741
>gb|BT018239.1| Zea mays clone EL01N0563B07.c mRNA sequence Length = 1686 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 378 agcacttctacaacagcctcttgcttctggcacaaat 414 ||||||||| ||||||||||||||||| |||||||| Sbjct: 1354 agcacttctttaacagcctcttgcttctagcacaaat 1318 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Minus Query: 481 ccacaagtgcaacacagtaactgtgaaaaggatcggcatggatcatgatgttctcaacat 540 ||||||| |||||||||||| |||| |||||||| | || ||| || |||||||| | || Sbjct: 1252 ccacaagcgcaacacagtaattgtggaaaggatcagtattgattataatgttctccatat 1193 Query: 541 atggg 545 ||||| Sbjct: 1192 atggg 1188
>gb|AC007213.6| Arabidopsis thaliana chromosome 2 clone T23O15 map RNS1, complete sequence Length = 81341 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 579 gatacgtattcaccatgttgaagcttcacgatatctttctt 619 ||||||||||| ||||||||||| || || ||||||||||| Sbjct: 6599 gatacgtattccccatgttgaagtttaacaatatctttctt 6639
>gb|AC006951.6| Arabidopsis thaliana chromosome 2 clone T1O3 map RNS1, complete sequence Length = 99804 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 579 gatacgtattcaccatgttgaagcttcacgatatctttctt 619 ||||||||||| ||||||||||| || || ||||||||||| Sbjct: 83624 gatacgtattccccatgttgaagtttaacaatatctttctt 83664
>emb|Z97335.2|ATFCA0 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 0 Length = 200576 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 105 tcccaacatcaaaatatatcaaa 127 ||||||||||||||||||||||| Sbjct: 16977 tcccaacatcaaaatatatcaaa 16999
>emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37 Length = 199667 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 105 tcccaacatcaaaatatatcaaa 127 ||||||||||||||||||||||| Sbjct: 151192 tcccaacatcaaaatatatcaaa 151214
>emb|AJ401089.1|BNA401089 Brassica napus mRNA for long chain acyl-CoA synthetase (acs6 gene) Length = 2246 Score = 46.1 bits (23), Expect = 0.14 Identities = 131/167 (78%) Strand = Plus / Minus Query: 480 accacaagtgcaacacagtaactgtgaaaaggatcggcatggatcatgatgttctcaaca 539 |||||||| || ||||||||||||| ||| ||||| ||||| | ||| ||||| ||||| Sbjct: 1809 accacaagagccacacagtaactgtaaaacggatcagcatgaaccattatgttttcaacg 1750 Query: 540 tatgggttcatggccaatgcagcttccaccttcccgagagatacgtattcaccatgttga 599 || ||| | || | ||||||||||| || || | || || ||||| ||||| ||| Sbjct: 1749 taggggcttatactgagagcagcttccactttgcccaaggagacatattccccatgctga 1690 Query: 600 agcttcacgatatctttcttgcggtcaatgatttcaaggcaaccatc 646 ||||| || ||||| ||||| | ||| || || |||||||||||||| Sbjct: 1689 agcttaacaatatccttctttctgtctattatctcaaggcaaccatc 1643
>dbj|AB236768.1| Trifolium pratense RNA for putative long chain acyl-CoA synthetase 9, complete cds, clone: C1568 Length = 2570 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 481 ccacaagtgcaacacagtaactgtgaaaaggatcggcat 519 |||||||||| ||||||||||| ||||||| ||| |||| Sbjct: 2033 ccacaagtgccacacagtaactttgaaaagaatcagcat 1995 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 624 tcaatgatttcaaggcaaccatctg 648 |||||||| |||||||||||||||| Sbjct: 1890 tcaatgatctcaaggcaaccatctg 1866
>ref|XM_695752.1| PREDICTED: Danio rerio wu:fl49b07 (wu:fl49b07), mRNA Length = 894 Score = 46.1 bits (23), Expect = 0.14 Identities = 77/95 (81%) Strand = Plus / Minus Query: 558 gcagcttccaccttcccgagagatacgtattcaccatgttgaagcttcacgatatctttc 617 |||||||| |||||||| ||||| || |||||||| ||||||||||| | |||||| Sbjct: 671 gcagcttcaaccttccccagagacacatattcacctgcctgaagcttcaccaggtctttc 612 Query: 618 ttgcggtcaatgatttcaaggcaaccatctggatg 652 || || || | ||||| || |||||||||||||| Sbjct: 611 ttccgatccacaatttccagacaaccatctggatg 577
>gb|BC091952.1| Danio rerio wu:fl49b07, mRNA (cDNA clone IMAGE:7147969), partial cds Length = 3325 Score = 46.1 bits (23), Expect = 0.14 Identities = 77/95 (81%) Strand = Plus / Minus Query: 558 gcagcttccaccttcccgagagatacgtattcaccatgttgaagcttcacgatatctttc 617 |||||||| |||||||| ||||| || |||||||| ||||||||||| | |||||| Sbjct: 1712 gcagcttcaaccttccccagagacacatattcacctgcctgaagcttcaccaggtctttc 1653 Query: 618 ttgcggtcaatgatttcaaggcaaccatctggatg 652 || || || | ||||| || |||||||||||||| Sbjct: 1652 ttccgatccacaatttccagacaaccatctggatg 1618
>gb|AC123055.3| Mus musculus BAC clone RP24-267D17 from chromosome 3, complete sequence Length = 187323 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 112 atcaaaatatatcaaatatagt 133 |||||||||||||||||||||| Sbjct: 3929 atcaaaatatatcaaatatagt 3950
>gb|AC006088.1| Homo sapiens 12q24.1 PAC RP1-305I20 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 122605 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 547 tcatggccaatgcagcttccaccttc 572 ||||||||| |||||||||||||||| Sbjct: 117984 tcatggccactgcagcttccaccttc 117959
>gb|AC144548.8| Homo sapiens 12 BAC RP11-478C19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174974 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 547 tcatggccaatgcagcttccaccttc 572 ||||||||| |||||||||||||||| Sbjct: 98375 tcatggccactgcagcttccaccttc 98400
>emb|AL606470.15| Mouse DNA sequence from clone RP23-293J11 on chromosome 11 Contains a Friedreich ataxia protein (Frda) pseudogene, complete sequence Length = 203970 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 173 gtatcagtcagagtaagagaac 194 |||||||||||||||||||||| Sbjct: 61203 gtatcagtcagagtaagagaac 61182
>emb|CT030180.3| M.truncatula DNA sequence from clone MTH2-177C12 on chromosome 3, complete sequence Length = 141577 Score = 44.1 bits (22), Expect = 0.57 Identities = 58/70 (82%) Strand = Plus / Plus Query: 585 tattcaccatgttgaagcttcacgatatctttcttgcggtcaatgatttcaaggcaacca 644 ||||| ||||||||||| || || ||||| ||||| | || |||||||| ||||| ||| Sbjct: 46311 tattctccatgttgaagtttgacaatatccttcttcctatcgatgatttcgaggcaccca 46370 Query: 645 tctggatgga 654 || ||||||| Sbjct: 46371 tcaggatgga 46380 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 489 gcaacacagtaactgtgaaaaggatcggcatgga 522 |||||||||||||||||||| || || ||||||| Sbjct: 46102 gcaacacagtaactgtgaaaggggtctgcatgga 46135
>gb|AC135237.6| Mus musculus BAC clone RP23-306F11 from chromosome 3, complete sequence Length = 199436 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 112 atcaaaatatatcaaatatagt 133 |||||||||||||||||||||| Sbjct: 131767 atcaaaatatatcaaatatagt 131788
>gb|AC167021.3| Mus musculus BAC clone RP23-152D8 from chromosome 6, complete sequence Length = 222021 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 aacacaaaattggttctaatc 50 ||||||||||||||||||||| Sbjct: 8325 aacacaaaattggttctaatc 8345
>gb|AC115900.11| Mus musculus chromosome 6, clone RP24-464A7, complete sequence Length = 175003 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 aacacaaaattggttctaatc 50 ||||||||||||||||||||| Sbjct: 75297 aacacaaaattggttctaatc 75277
>emb|AL031273.1|HS726F20 Human DNA sequence from clone RP4-726F20 on chromosome 1p36.11-36.23 Contains the 5' end of a novel gene, complete sequence Length = 56959 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 109 aacatcaaaatatatcaaata 129 ||||||||||||||||||||| Sbjct: 45165 aacatcaaaatatatcaaata 45185
>dbj|AB028606.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F16F17 Length = 61510 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 catcaaaatatatcaaatata 131 ||||||||||||||||||||| Sbjct: 53239 catcaaaatatatcaaatata 53259 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 catcaaaatatatcaaatata 131 ||||||||||||||||||||| Sbjct: 50148 catcaaaatatatcaaatata 50168
>gb|AC102166.13| Mus musculus chromosome 1, clone RP23-447B15, complete sequence Length = 182043 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 atcaaaatatatcaaatata 131 |||||||||||||||||||| Sbjct: 18420 atcaaaatatatcaaatata 18439
>ref|XM_866911.1| PREDICTED: Bos taurus similar to CG7092-PA (LOC615176), partial mRNA Length = 4349 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atgatgttctcaacatatgg 544 |||||||||||||||||||| Sbjct: 1784 atgatgttctcaacatatgg 1765
>ref|XM_875370.1| PREDICTED: Bos taurus similar to WD repeat domain 10, transcript variant 6 (LOC536731), mRNA Length = 3940 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 cagcttccaccttcccgaga 578 |||||||||||||||||||| Sbjct: 2750 cagcttccaccttcccgaga 2769
>ref|XM_875299.1| PREDICTED: Bos taurus similar to WD repeat domain 10, transcript variant 5 (LOC536731), mRNA Length = 4114 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 cagcttccaccttcccgaga 578 |||||||||||||||||||| Sbjct: 2924 cagcttccaccttcccgaga 2943
>ref|XM_875226.1| PREDICTED: Bos taurus similar to WD repeat domain 10, transcript variant 4 (LOC536731), mRNA Length = 3940 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 cagcttccaccttcccgaga 578 |||||||||||||||||||| Sbjct: 2750 cagcttccaccttcccgaga 2769
>ref|XM_875164.1| PREDICTED: Bos taurus similar to WD repeat domain 10, transcript variant 3 (LOC536731), mRNA Length = 4117 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 cagcttccaccttcccgaga 578 |||||||||||||||||||| Sbjct: 2924 cagcttccaccttcccgaga 2943
>ref|XM_875087.1| PREDICTED: Bos taurus similar to WD repeat domain 10, transcript variant 2 (LOC536731), mRNA Length = 4102 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 cagcttccaccttcccgaga 578 |||||||||||||||||||| Sbjct: 2819 cagcttccaccttcccgaga 2838
>ref|XM_616874.2| PREDICTED: Bos taurus similar to WD repeat domain 10, transcript variant 1 (LOC536731), mRNA Length = 3937 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 cagcttccaccttcccgaga 578 |||||||||||||||||||| Sbjct: 2747 cagcttccaccttcccgaga 2766
>gb|DQ415922.1| Cleome spinosa clone BAC Cs1, complete sequence Length = 146078 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 aaaatatatcaaatatagta 134 |||||||||||||||||||| Sbjct: 99306 aaaatatatcaaatatagta 99287
>gb|BT014559.1| Lycopersicon esculentum clone 134012R, mRNA sequence Length = 2280 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 621 cggtcaatgatttcaaggcaaccatctg 648 |||||||| || |||||||||||||||| Sbjct: 1758 cggtcaattatctcaaggcaaccatctg 1731
>emb|CR847534.13| Zebrafish DNA sequence from clone DKEY-27E20 in linkage group 3, complete sequence Length = 211145 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 aaacacaaaattggttctaa 48 |||||||||||||||||||| Sbjct: 62336 aaacacaaaattggttctaa 62355
>gb|AC132455.3| Mus musculus BAC clone RP23-129K10 from chromosome 17, complete sequence Length = 210538 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tatagtatgtgccgacataa 147 |||||||||||||||||||| Sbjct: 208168 tatagtatgtgccgacataa 208149
>gb|AC144485.2| Gasterosteus aculeatus clone CH213-101E8, complete sequence Length = 203829 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 acctccctcttgagtttgag 262 |||||||||||||||||||| Sbjct: 23126 acctccctcttgagtttgag 23107
>ref|XM_726261.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03353) partial mRNA Length = 4874 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 atcaaaatatatcaaatata 131 |||||||||||||||||||| Sbjct: 449 atcaaaatatatcaaatata 468
>ref|XM_775068.1| PREDICTED: Strongylocentrotus purpuratus similar to Long-chain-fatty-acid--CoA ligase 5 (Long-chain acyl-CoA synthetase 5) (LACS 5) (LOC574703), mRNA Length = 1065 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 608 gatatctttcttgcggtcaatgat 631 |||||||||||| ||||||||||| Sbjct: 627 gatatctttcttacggtcaatgat 604
>emb|AL929356.1|PFA929356 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5 Length = 335050 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 atcaaaatatatcaaatata 131 |||||||||||||||||||| Sbjct: 52679 atcaaaatatatcaaatata 52698
>gb|AC155824.3| Mus musculus BAC clone RP23-136L1 from chromosome 8, complete sequence Length = 220437 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 aaatatatcaaatatagtat 135 |||||||||||||||||||| Sbjct: 145436 aaatatatcaaatatagtat 145417
>ref|NM_001019915.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC694.06c), partial mRNA Length = 3060 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 atcacctccctcttgagttt 259 |||||||||||||||||||| Sbjct: 378 atcacctccctcttgagttt 359
>emb|CR394535.19| Zebrafish DNA sequence from clone CH211-198P19 in linkage group 3, complete sequence Length = 190173 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 aaacacaaaattggttctaa 48 |||||||||||||||||||| Sbjct: 64894 aaacacaaaattggttctaa 64875
>emb|CT574569.2| Pan troglodytes chromosome X clone CH251-17O16 map Xq28, complete sequence Length = 178497 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 atcaaaatatatcaaatata 131 |||||||||||||||||||| Sbjct: 130999 atcaaaatatatcaaatata 130980
>gb|AC004664.1|AC004664 Homo sapiens chromosome 4 clone C0500H20 map 4p16, complete sequence Length = 172072 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 tgtctcgaacttctccagtcgtcc 349 ||||||||||||||||||| |||| Sbjct: 136473 tgtctcgaacttctccagtggtcc 136496
>dbj|AP001894.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-606E8, complete sequence Length = 151452 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ctcagggtatcagtcagagt 186 |||||||||||||||||||| Sbjct: 149446 ctcagggtatcagtcagagt 149427
>dbj|AP002795.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-715G18, complete sequence Length = 165240 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ctcagggtatcagtcagagt 186 |||||||||||||||||||| Sbjct: 16388 ctcagggtatcagtcagagt 16369
>gb|AC171178.2| Gallus gallus BAC clone CH261-77I20 from chromosome ul, complete sequence Length = 237797 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 gcaacacagtaactgtgaaa 508 |||||||||||||||||||| Sbjct: 77023 gcaacacagtaactgtgaaa 77042
>emb|AL138666.2|SPAC694 S.pombe chromosome I cosmid c694 Length = 18701 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 atcacctccctcttgagttt 259 |||||||||||||||||||| Sbjct: 14153 atcacctccctcttgagttt 14172
>emb|AL627212.21| Mouse DNA sequence from clone RP23-145E1 on chromosome 4, complete sequence Length = 207362 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gatctggcatcagcttgact 317 |||||||||||||||||||| Sbjct: 186011 gatctggcatcagcttgact 186030
>gb|AC126694.4| Mus musculus BAC clone RP23-310G20 from 17, complete sequence Length = 232041 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tatagtatgtgccgacataa 147 |||||||||||||||||||| Sbjct: 200791 tatagtatgtgccgacataa 200810
>gb|AC158950.3| Mus musculus chromosome 1, clone RP24-215K13, complete sequence Length = 208060 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 atcaaaatatatcaaatata 131 |||||||||||||||||||| Sbjct: 135215 atcaaaatatatcaaatata 135196 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,913,676 Number of Sequences: 3902068 Number of extensions: 5913676 Number of successful extensions: 97653 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 97359 Number of HSP's gapped (non-prelim): 285 length of query: 654 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 631 effective length of database: 17,143,297,704 effective search space: 10817420851224 effective search space used: 10817420851224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)