ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
14ET_HUMAN (Q9NRA8) Eukaryotic translation initiation factor 4E t... 32 2.0
2LIPS_HUMAN (Q05469) Hormone-sensitive lipase (EC 3.1.1.79) (HSL) 30 9.8

>4ET_HUMAN (Q9NRA8) Eukaryotic translation initiation factor 4E transporter|
           (eIF4E transporter) (4E-T) (Eukaryotic translation
           initiation factor 4E nuclear import factor 1)
          Length = 985

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
 Frame = -2

Query: 715 SRRRSSSIEPNKD---------LGSGESKQGDTWERVTQIRDKFEYDRERRMRERAFAPM 563
           SRR  S +E + D         +GSG      T+E+  ++ DK   D   R RER F   
Sbjct: 133 SRRSGSPLEKDSDGLRLLGGRRIGSGRIISARTFEKDHRLSDKDLRDLRDRDRERDFKDK 192

Query: 562 NMENNFGQQNWKRPESRTGQVFTRQ 488
                FG       E R    +T +
Sbjct: 193 RFRREFGDSKRVFGERRRNDSYTEE 217



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>LIPS_HUMAN (Q05469) Hormone-sensitive lipase (EC 3.1.1.79) (HSL)|
          Length = 1076

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 31  VLSCEQNTKPYIKVSKRSHRYYQNTKAYIKVIILNSSTTTLT 156
           V+S    T P+ K S R+HR+YQ+T +    +I N    T+T
Sbjct: 270 VMSGYSGTSPHEKTSARNHRHYQDTASR---LIHNMDLRTMT 308


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,017,247
Number of Sequences: 219361
Number of extensions: 2267768
Number of successful extensions: 5913
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5912
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7422931207
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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