ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465639.1| Oryza sativa (japonica cultivar-group), mRNA 186 7e-44
2gb|BT017075.1| Zea mays clone EL01N0359G11.c mRNA sequence 149 1e-32
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 107 5e-20
4dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic D... 107 5e-20
5dbj|AB020745.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 64 7e-07
6dbj|AK118528.1| Arabidopsis thaliana mRNA for unknown protein, c... 56 2e-04
7ref|NM_111623.2| Arabidopsis thaliana unknown protein AT3G07440 ... 54 7e-04
8gb|AC009853.4|ATAC009853 Arabidopsis thaliana chromosome III BAC... 54 7e-04
9gb|BT004353.1| Arabidopsis thaliana clone U20162 unknown protein... 54 7e-04
10gb|BT002784.1| Arabidopsis thaliana clone RAFL15-01-M12 (R20162)... 54 7e-04
11gb|AC102638.13| Mus musculus chromosome 3, clone RP23-406D2, com... 50 0.010
12gb|AC122856.3| Mus musculus BAC clone RP23-121N19 from 3, comple... 50 0.010
13emb|Z70681.1|CEC30F2 Caenorhabditis elegans Cosmid C30F2, comple... 46 0.16
14emb|BX822950.1|CNS0A5TU Arabidopsis thaliana Full-length cDNA Co... 46 0.16
15emb|CT010162.2| Pan troglodytes chromosome X BAC RP43-009H04, co... 44 0.63
16emb|AL139278.12| Human DNA sequence from clone RP4-639D23 on chr... 44 0.63
17gb|AC096506.5| Homo sapiens Xp BAC RP11-64I1 (Roswell Park Cance... 44 0.63
18gb|AC020732.4|AC020732 Homo sapiens BAC clone RP11-556H16 from X... 44 0.63
19gb|BC066733.1| Danio rerio zgc:55316, mRNA (cDNA clone IMAGE:652... 42 2.5
20ref|NM_199601.1| Danio rerio zgc:55316 (zgc:55316), mRNA 42 2.5
21emb|BX323026.5| Mouse DNA sequence from clone RP24-95F14 on chro... 42 2.5
22emb|AL669946.9| Mouse DNA sequence from clone RP23-71G18 on chro... 42 2.5
23gb|BC044366.1| Danio rerio zgc:55316, mRNA (cDNA clone MGC:55316... 42 2.5
24ref|XM_696963.1| PREDICTED: Danio rerio hypothetical protein LOC... 42 2.5
25gb|AC119832.9| Mus musculus chromosome 3, clone RP23-471I16, com... 40 9.9
26gb|AC165074.2| Mus musculus BAC clone RP24-501F1 from chromosome... 40 9.9
27gb|AC149635.1| Genomic sequence for broccoli [Brassica oleracea ... 40 9.9
28gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 9.9
29gb|AC119842.9| Mus musculus chromosome 1, clone RP23-277F23, com... 40 9.9
30gb|AC132835.7| Mus musculus chromosome 1, clone RP24-490C20, com... 40 9.9
31gb|AC110567.10| Mus musculus chromosome 5, clone RP23-304I24, co... 40 9.9
32gb|AC116877.18| Mus musculus chromosome 18, clone RP24-429E21, c... 40 9.9
33gb|AF188662.1| Bluetongue virus isolate 502233 VP7 core protein ... 40 9.9
34gb|AC153530.9| Mus musculus 10 BAC RP23-202A18 (Roswell Park Can... 40 9.9
35gb|AC142271.3| Mus musculus chromosome 5 clone RP24-69A21, compl... 40 9.9
36gb|AC121589.3| Mus musculus BAC clone RP23-281G14 from chromosom... 40 9.9
37gb|AC132418.3| Mus musculus BAC clone RP23-251N2 from chromosome... 40 9.9
38ref|XM_751404.1| Ustilago maydis 521 hypothetical protein (UM003... 40 9.9
39emb|AL139275.30| Human DNA sequence from clone RP11-552E20 on ch... 40 9.9
40gb|AC158467.3| Mus musculus chromosome 3, clone RP23-116C1, comp... 40 9.9
41gb|AY263168.1| Takifugu rubripes Tmc2-related protein 2 mRNA, pa... 40 9.9
42emb|Z99117.2|BSUB0014 Bacillus subtilis complete genome (section... 40 9.9
43emb|AL954346.7| Mouse DNA sequence from clone RP23-298H6 on chro... 40 9.9
44gb|AC112508.2| Homo sapiens 3 BAC RP11-347G18 (Roswell Park Canc... 40 9.9
45dbj|D84432.1|BACJH642 Bacillus subtilis DNA, 283 Kb region conta... 40 9.9
46gb|AC122731.16| Pan troglodytes clone rp43-14d7, complete sequence 40 9.9
47gb|AC113420.2| Homo sapiens chromosome 5 clone RP11-586E1, compl... 40 9.9
48emb|BX296521.18| Zebrafish DNA sequence from clone CH211-194E11 ... 40 9.9
49gb|AC025445.5| Homo sapiens chromosome 5 clone CTD-2049O17, comp... 40 9.9
50emb|BX511180.7| Zebrafish DNA sequence from clone CH211-221H1 in... 40 9.9
51gb|AC153952.4| Mus musculus 10 BAC RP24-82M14 (Roswell Park Canc... 40 9.9
52gb|AC013414.7| Homo sapiens BAC clone RP11-560I3 from 2, complet... 40 9.9
53gb|AC132479.2| Homo sapiens BAC clone RP11-769N11 from 2, comple... 40 9.9
54gb|AC016642.7| Homo sapiens chromosome 5 clone RP11-479O16, comp... 40 9.9
55gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complet... 40 9.9
56gb|AC018804.9| Homo sapiens BAC clone RP11-397H17 from 2, comple... 40 9.9
57gb|AC062022.6| Homo sapiens BAC clone RP11-220I15 from 2, comple... 40 9.9
58gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, compl... 40 9.9
59gb|AC092602.2| Homo sapiens BAC clone RP11-134G21 from 2, comple... 40 9.9
60gb|AC018865.4| Homo sapiens BAC clone RP11-32C20 from 2, complet... 40 9.9
61gb|L32599.1|BACBLTRD Bacillus subtilis multidrug efflux transpor... 40 9.9
62gb|AC131687.4| Mus musculus BAC clone RP23-379C1 from 14, comple... 40 9.9
63gb|AC163446.2| Mus musculus chromosome 5, clone RP23-151G22, com... 40 9.9
64emb|AL670464.12| Mouse DNA sequence from clone RP23-12I24 on chr... 40 9.9 
>ref|XM_465639.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1662

 Score =  186 bits (94), Expect = 7e-44
 Identities = 160/182 (87%)
 Strand = Plus / Minus

                                                                        
Query: 537  tgctggccaaaattgttctccatattcatgggagcaaacgctcgctctctcattctcctt 596
            ||||| ||||| |||||||||||||||||||||||||| ||||| || |||||||| || 
Sbjct: 1388 tgctgcccaaagttgttctccatattcatgggagcaaatgctcgttccctcattcttctc 1329

                                                                        
Query: 597  tctctgtcatactcaaacttgtcacgaatttgagttaccctttcccatgtatcaccctgt 656
            ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct: 1328 tctctgtcatattcaaacttgtcacgaatttgagtaaccctttcccatgtttcaccttgt 1269

                                                                        
Query: 657  ttgctttccccagaaccaaggtccttgtttggctctatgctggagctccttctcctgctg 716
            |||||| ||  | |||||| |||||||||||||||||   ||| |  |||||||||||||
Sbjct: 1268 ttgcttgccgtaaaaccaatgtccttgtttggctctacattggtgtgccttctcctgctg 1209

              
Query: 717  ta 718
            ||
Sbjct: 1208 ta 1207
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>gb|BT017075.1| Zea mays clone EL01N0359G11.c mRNA sequence
          Length = 1143

 Score =  149 bits (75), Expect = 1e-32
 Identities = 150/175 (85%)
 Strand = Plus / Minus

                                                                       
Query: 547 aattgttctccatattcatgggagcaaacgctcgctctctcattctcctttctctgtcat 606
           ||||||||||  | |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 657 aattgttctcagtgttcatgggagcaaatgctcgttctctcattctcctttctctgtcat 598

                                                                       
Query: 607 actcaaacttgtcacgaatttgagttaccctttcccatgtatcaccctgtttgctttccc 666
           | ||||| ||||||||||||||||| ||||||||||| || |||||  ||||| |  |||
Sbjct: 597 attcaaatttgtcacgaatttgagtaaccctttcccacgtttcacctcgtttgttcaccc 538

                                                                  
Query: 667 cagaaccaaggtccttgtttggctctatgctggagctccttctcctgctgtatgg 721
           |  | ||||||||||||||||| ||||   ||||   ||||||||||||||||||
Sbjct: 537 cgaagccaaggtccttgtttggttctacattggactgccttctcctgctgtatgg 483
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  107 bits (54), Expect = 5e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                            
Query: 585      ctcattctcctttctctgtcatactcaaacttgtcacgaatttgagttaccctttcccat 644
                |||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 16529390 ctcattcttctctctctgtcatattcaaacttgtcacgaatttgagtaaccctttcccat 16529331

                                  
Query: 645      gtatcaccctgtttgctt 662
                || ||||| |||||||||
Sbjct: 16529330 gtttcaccttgtttgctt 16529313



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 537      tgctggccaaaattgttctccatattcatgggagcaaa 574
                ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 16529823 tgctgcccaaagttgttctccatattcatgggagcaaa 16529786
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>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0527E02
          Length = 176826

 Score =  107 bits (54), Expect = 5e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                          
Query: 585    ctcattctcctttctctgtcatactcaaacttgtcacgaatttgagttaccctttcccat 644
              |||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 102805 ctcattcttctctctctgtcatattcaaacttgtcacgaatttgagtaaccctttcccat 102746

                                
Query: 645    gtatcaccctgtttgctt 662
              || ||||| |||||||||
Sbjct: 102745 gtttcaccttgtttgctt 102728



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 537    tgctggccaaaattgttctccatattcatgggagcaaa 574
              ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 103238 tgctgcccaaagttgttctccatattcatgggagcaaa 103201
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>dbj|AB020745.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJE7
          Length = 74298

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                             
Query: 582   tctctcattctcctttctctgtcatactcaaacttgtcacgaatttga 629
             ||||||||||||||||||| |||||||||||| ||||| || ||||||
Sbjct: 63308 tctctcattctcctttctcagtcatactcaaatttgtcccggatttga 63355
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>dbj|AK118528.1| Arabidopsis thaliana mRNA for unknown protein, complete cds, clone:
           RAFL19-75-O04
          Length = 1115

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 582 tctctcattctcctttctctgtcatactcaaa 613
           ||||||||||||||||||| ||||||||||||
Sbjct: 625 tctctcattctcctttctcagtcatactcaaa 594
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>ref|NM_111623.2| Arabidopsis thaliana unknown protein AT3G07440 mRNA, complete cds
          Length = 908

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 582 tctctcattctcctttctctgtcatactcaaactt 616
           |||||||| ||||||||||| ||||||||||||||
Sbjct: 640 tctctcatcctcctttctctatcatactcaaactt 606
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>gb|AC009853.4|ATAC009853 Arabidopsis thaliana chromosome III BAC F21O3 genomic sequence,
             complete sequence
          Length = 90112

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 582   tctctcattctcctttctctgtcatactcaaactt 616
             |||||||| ||||||||||| ||||||||||||||
Sbjct: 57097 tctctcatcctcctttctctatcatactcaaactt 57063
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>gb|BT004353.1| Arabidopsis thaliana clone U20162 unknown protein (At3g07440) mRNA,
           complete cds
          Length = 739

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 582 tctctcattctcctttctctgtcatactcaaactt 616
           |||||||| ||||||||||| ||||||||||||||
Sbjct: 599 tctctcatcctcctttctctatcatactcaaactt 565
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>gb|BT002784.1| Arabidopsis thaliana clone RAFL15-01-M12 (R20162) unknown protein
           (At3g07440) mRNA, complete cds
          Length = 921

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 582 tctctcattctcctttctctgtcatactcaaactt 616
           |||||||| ||||||||||| ||||||||||||||
Sbjct: 640 tctctcatcctcctttctctatcatactcaaactt 606
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>gb|AC102638.13| Mus musculus chromosome 3, clone RP23-406D2, complete sequence
          Length = 172817

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 310    aaatcttttattatttccatcacat 334
              |||||||||||||||||||||||||
Sbjct: 166566 aaatcttttattatttccatcacat 166542
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>gb|AC122856.3| Mus musculus BAC clone RP23-121N19 from 3, complete sequence
          Length = 187311

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 310    aaatcttttattatttccatcacat 334
              |||||||||||||||||||||||||
Sbjct: 150015 aaatcttttattatttccatcacat 150039
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>emb|Z70681.1|CEC30F2 Caenorhabditis elegans Cosmid C30F2, complete sequence
          Length = 25282

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 181   tctcatctcattttcaattcaat 203
             |||||||||||||||||||||||
Sbjct: 24320 tctcatctcattttcaattcaat 24342
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>emb|BX822950.1|CNS0A5TU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB75ZB08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1175

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 582 tctctcattctcctttctctgtcatactcaaactt 616
           |||||||| ||||||||||| | ||||||||||||
Sbjct: 875 tctctcatcctcctttctctatgatactcaaactt 841
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>emb|CT010162.2| Pan troglodytes chromosome X BAC RP43-009H04, complete sequence
          Length = 195301

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 46    caaaatacaaaaccatacatcaaagt 71
             ||||||||||||||||| ||||||||
Sbjct: 21788 caaaatacaaaaccataaatcaaagt 21763
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>emb|AL139278.12| Human DNA sequence from clone RP4-639D23 on chromosome Xp21.1-21.3
             Contains part of the DMD gene for dystrophin (muscular
             dystrophy, Duchenne and Becker types), complete sequence
          Length = 95866

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 46    caaaatacaaaaccatacatcaaagt 71
             ||||||||||||||||| ||||||||
Sbjct: 54982 caaaatacaaaaccataaatcaaagt 55007
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>gb|AC096506.5| Homo sapiens Xp BAC RP11-64I1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 120135

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 46    caaaatacaaaaccatacatcaaagt 71
             ||||||||||||||||| ||||||||
Sbjct: 98510 caaaatacaaaaccataaatcaaagt 98535
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>gb|AC020732.4|AC020732 Homo sapiens BAC clone RP11-556H16 from X, complete sequence
          Length = 181559

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 46    caaaatacaaaaccatacatcaaagt 71
             ||||||||||||||||| ||||||||
Sbjct: 96510 caaaatacaaaaccataaatcaaagt 96535
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>gb|BC066733.1| Danio rerio zgc:55316, mRNA (cDNA clone IMAGE:6524375), partial cds
          Length = 2550

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 684  tttggctctatgctggagctc 704
            |||||||||||||||||||||
Sbjct: 1094 tttggctctatgctggagctc 1114
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>ref|NM_199601.1| Danio rerio zgc:55316 (zgc:55316), mRNA
          Length = 2536

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 684  tttggctctatgctggagctc 704
            |||||||||||||||||||||
Sbjct: 1131 tttggctctatgctggagctc 1151
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>emb|BX323026.5| Mouse DNA sequence from clone RP24-95F14 on chromosome 11 Contains the
             Ppm1d gene for magnesium-dependent protein phosphatase 1D
             delta isoform, the 5' end of the Bcas3 gene for breast
             carcinoma amplified sequence 3 and a CpG island, complete
             sequence
          Length = 130030

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 587   cattctcctttctctgtcatactca 611
             ||||||||||||||||| |||||||
Sbjct: 51643 cattctcctttctctgttatactca 51667
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>emb|AL669946.9| Mouse DNA sequence from clone RP23-71G18 on chromosome 11 Contains the
             3' end of a novel gene, the Nsg2 gene neuron specific gene
             family, a novel gene and a CpG island, complete sequence
          Length = 177182

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 518   ttctggccttttccagttctg 538
             |||||||||||||||||||||
Sbjct: 35632 ttctggccttttccagttctg 35652
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>gb|BC044366.1| Danio rerio zgc:55316, mRNA (cDNA clone MGC:55316 IMAGE:2600668),
            complete cds
          Length = 2536

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 684  tttggctctatgctggagctc 704
            |||||||||||||||||||||
Sbjct: 1131 tttggctctatgctggagctc 1151
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>ref|XM_696963.1| PREDICTED: Danio rerio hypothetical protein LOC554727 (LOC554727),
           mRNA
          Length = 1761

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 684 tttggctctatgctggagctc 704
           |||||||||||||||||||||
Sbjct: 370 tttggctctatgctggagctc 390
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>gb|AC119832.9| Mus musculus chromosome 3, clone RP23-471I16, complete sequence
          Length = 178681

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   catctcattttcaattcaat 203
             ||||||||||||||||||||
Sbjct: 87197 catctcattttcaattcaat 87178
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>gb|AC165074.2| Mus musculus BAC clone RP24-501F1 from chromosome 12, complete sequence
          Length = 166016

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   caaaatccgtgagcacaaag 239
             ||||||||||||||||||||
Sbjct: 84330 caaaatccgtgagcacaaag 84349
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>gb|AC149635.1| Genomic sequence for broccoli [Brassica oleracea L. (Italica group)]
             BAC clone B19N3, complete sequence
          Length = 96718

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 581   ctctctcattctcctttctc 600
             ||||||||||||||||||||
Sbjct: 69686 ctctctcattctcctttctc 69667
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 578    tcgctctctcattctccttt 597
              ||||||||||||||||||||
Sbjct: 300785 tcgctctctcattctccttt 300804
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>gb|AC119842.9| Mus musculus chromosome 1, clone RP23-277F23, complete sequence
          Length = 175179

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    acagatactatcaaaatacc 105
             ||||||||||||||||||||
Sbjct: 28690 acagatactatcaaaatacc 28709
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>gb|AC132835.7| Mus musculus chromosome 1, clone RP24-490C20, complete sequence
          Length = 148948

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    acagatactatcaaaatacc 105
             ||||||||||||||||||||
Sbjct: 25937 acagatactatcaaaatacc 25918
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>gb|AC110567.10| Mus musculus chromosome 5, clone RP23-304I24, complete sequence
          Length = 188137

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 681    ttgtttggctctatgctgga 700
              ||||||||||||||||||||
Sbjct: 187940 ttgtttggctctatgctgga 187921
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>gb|AC116877.18| Mus musculus chromosome 18, clone RP24-429E21, complete sequence
          Length = 188544

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   tcaactctcatctcattttc 195
             ||||||||||||||||||||
Sbjct: 76498 tcaactctcatctcattttc 76517
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>gb|AF188662.1| Bluetongue virus isolate 502233 VP7 core protein (S7) gene,
           complete cds
          Length = 1156

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 321 tatttccatcacattggtttctaa 344
           ||||||||||||||||| ||||||
Sbjct: 113 tatttccatcacattggcttctaa 90
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>gb|AC153530.9| Mus musculus 10 BAC RP23-202A18 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 192392

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 89   gatactatcaaaataccaaa 108
            ||||||||||||||||||||
Sbjct: 1253 gatactatcaaaataccaaa 1234
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>gb|AC142271.3| Mus musculus chromosome 5 clone RP24-69A21, complete sequence
          Length = 179941

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 681    ttgtttggctctatgctgga 700
              ||||||||||||||||||||
Sbjct: 135453 ttgtttggctctatgctgga 135472
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>gb|AC121589.3| Mus musculus BAC clone RP23-281G14 from chromosome 3, complete sequence
          Length = 215395

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    atacatcaaagtgatcatcc 130
              ||||||||||||||||||||
Sbjct: 159002 atacatcaaagtgatcatcc 158983
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>gb|AC132418.3| Mus musculus BAC clone RP23-251N2 from chromosome 18, complete sequence
          Length = 206588

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 316    tttattatttccatcacatt 335
              ||||||||||||||||||||
Sbjct: 121869 tttattatttccatcacatt 121888
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>ref|XM_751404.1| Ustilago maydis 521 hypothetical protein (UM00350.1) partial mRNA
          Length = 1671

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 655 gtttgctttccccagaaccaaggt 678
           ||||||||||||| ||||||||||
Sbjct: 774 gtttgctttccccggaaccaaggt 797
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>emb|AL139275.30| Human DNA sequence from clone RP11-552E20 on chromosome 6p12.3-21.2
             Contains the 3' part of a novel gene, the 5' part of a
             novel gene, the 3' part of a novel gene and part of a
             novel gene, complete sequence
          Length = 193126

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 580   gctctctcattctcctttct 599
             ||||||||||||||||||||
Sbjct: 10586 gctctctcattctcctttct 10567
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>gb|AC158467.3| Mus musculus chromosome 3, clone RP23-116C1, complete sequence
          Length = 173252

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  catctcattttcaattcaat 203
            ||||||||||||||||||||
Sbjct: 8062 catctcattttcaattcaat 8043
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>gb|AY263168.1| Takifugu rubripes Tmc2-related protein 2 mRNA, partial cds
          Length = 1977

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 tctgaaacttgatccatttc 383
           ||||||||||||||||||||
Sbjct: 241 tctgaaacttgatccatttc 222
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>emb|Z99117.2|BSUB0014 Bacillus subtilis complete genome (section 14 of 21): from 2613658 to
              2812830
          Length = 199173

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    gccatcaactctcatctcat 191
              ||||||||||||||||||||
Sbjct: 103119 gccatcaactctcatctcat 103138
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>emb|AL954346.7| Mouse DNA sequence from clone RP23-298H6 on chromosome 11 Contains part
             of a novel gene, the Efemp1 gene for epidermal growth
             factor-containing fibulin-like extracellular matrix
             protein 1 and a laminin receptor 1 (ribosomal protein SA)
             (Lamr1) pseudogene, complete sequence
          Length = 178153

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    aaaatacaaaaccatacatc 66
             ||||||||||||||||||||
Sbjct: 49268 aaaatacaaaaccatacatc 49287
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>gb|AC112508.2| Homo sapiens 3 BAC RP11-347G18 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 164435

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 16   taaaacataagtaatgtttt 35
            ||||||||||||||||||||
Sbjct: 8946 taaaacataagtaatgtttt 8927
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>dbj|D84432.1|BACJH642 Bacillus subtilis DNA, 283 Kb region containing skin element
          Length = 282700

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  gccatcaactctcatctcat 191
            ||||||||||||||||||||
Sbjct: 2063 gccatcaactctcatctcat 2044
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>gb|AC122731.16| Pan troglodytes clone rp43-14d7, complete sequence
          Length = 166903

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 701   gctccttctcctgctgtatg 720
             ||||||||||||||||||||
Sbjct: 57727 gctccttctcctgctgtatg 57708
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>gb|AC113420.2| Homo sapiens chromosome 5 clone RP11-586E1, complete sequence
          Length = 176267

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    gagcaaaatacaaaaccata 62
             ||||||||||||||||||||
Sbjct: 40902 gagcaaaatacaaaaccata 40883
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>emb|BX296521.18| Zebrafish DNA sequence from clone CH211-194E11 in linkage group 7,
             complete sequence
          Length = 185817

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 119   aagtgatcatcctaaactctagta 142
             |||||||||||||||||| |||||
Sbjct: 60211 aagtgatcatcctaaactgtagta 60234
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>gb|AC025445.5| Homo sapiens chromosome 5 clone CTD-2049O17, complete sequence
          Length = 184635

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     gagcaaaatacaaaaccata 62
              ||||||||||||||||||||
Sbjct: 167024 gagcaaaatacaaaaccata 167005
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>emb|BX511180.7| Zebrafish DNA sequence from clone CH211-221H1 in linkage group 3,
             complete sequence
          Length = 155448

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   aaatcttttattatttccat 329
             ||||||||||||||||||||
Sbjct: 74103 aaatcttttattatttccat 74122
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>gb|AC153952.4| Mus musculus 10 BAC RP24-82M14 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 183398

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     gatactatcaaaataccaaa 108
              ||||||||||||||||||||
Sbjct: 157238 gatactatcaaaataccaaa 157219
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>gb|AC013414.7| Homo sapiens BAC clone RP11-560I3 from 2, complete sequence
          Length = 161390

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 590    tctcctttctctgtcatact 609
              ||||||||||||||||||||
Sbjct: 102664 tctcctttctctgtcatact 102683
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>gb|AC132479.2| Homo sapiens BAC clone RP11-769N11 from 2, complete sequence
          Length = 168824

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 701    gctccttctcctgctgtatg 720
              ||||||||||||||||||||
Sbjct: 125679 gctccttctcctgctgtatg 125660
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>gb|AC016642.7| Homo sapiens chromosome 5 clone RP11-479O16, complete sequence
          Length = 160907

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 582   tctctcattctcctttctct 601
             ||||||||||||||||||||
Sbjct: 85875 tctctcattctcctttctct 85856
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>gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complete sequence
          Length = 132753

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 701   gctccttctcctgctgtatg 720
             ||||||||||||||||||||
Sbjct: 83522 gctccttctcctgctgtatg 83541
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>gb|AC018804.9| Homo sapiens BAC clone RP11-397H17 from 2, complete sequence
          Length = 195514

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 701    gctccttctcctgctgtatg 720
              ||||||||||||||||||||
Sbjct: 174737 gctccttctcctgctgtatg 174756
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>gb|AC062022.6| Homo sapiens BAC clone RP11-220I15 from 2, complete sequence
          Length = 151006

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   tttattatttccatcacatt 335
             ||||||||||||||||||||
Sbjct: 55951 tttattatttccatcacatt 55932
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>gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, complete sequence
          Length = 219471

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 701    gctccttctcctgctgtatg 720
              ||||||||||||||||||||
Sbjct: 118807 gctccttctcctgctgtatg 118788
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>gb|AC092602.2| Homo sapiens BAC clone RP11-134G21 from 2, complete sequence
          Length = 166299

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 701    gctccttctcctgctgtatg 720
              ||||||||||||||||||||
Sbjct: 127796 gctccttctcctgctgtatg 127777
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>gb|AC018865.4| Homo sapiens BAC clone RP11-32C20 from 2, complete sequence
          Length = 165411

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 701    gctccttctcctgctgtatg 720
              ||||||||||||||||||||
Sbjct: 114978 gctccttctcctgctgtatg 114959
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>gb|L32599.1|BACBLTRD Bacillus subtilis multidrug efflux transporter (blt) gene;
            transcription regulator (bltR) gene; transacetylase
            (bltD) gene
          Length = 3723

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  gccatcaactctcatctcat 191
            ||||||||||||||||||||
Sbjct: 1814 gccatcaactctcatctcat 1833
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>gb|AC131687.4| Mus musculus BAC clone RP23-379C1 from 14, complete sequence
          Length = 176044

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 580    gctctctcattctcctttct 599
              ||||||||||||||||||||
Sbjct: 121607 gctctctcattctcctttct 121588
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>gb|AC163446.2| Mus musculus chromosome 5, clone RP23-151G22, complete sequence
          Length = 190466

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 588   attctcctttctctgtcata 607
             ||||||||||||||||||||
Sbjct: 23841 attctcctttctctgtcata 23860
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>emb|AL670464.12| Mouse DNA sequence from clone RP23-12I24 on chromosome 4, complete
             sequence
          Length = 203558

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    aaataccaaagcatacatca 118
             ||||||||||||||||||||
Sbjct: 87304 aaataccaaagcatacatca 87323


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,589,651
Number of Sequences: 3902068
Number of extensions: 8589651
Number of successful extensions: 159750
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 159529
Number of HSP's gapped (non-prelim): 217
length of query: 722
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 699
effective length of database: 17,143,297,704
effective search space: 11983165095096
effective search space used: 11983165095096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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