ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags32n24 |
|---|---|
| Clone Library Name | barley_pub |
>ASNS_MAIZE (P49094) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 585 Score = 88.6 bits (218), Expect = 8e-18 Identities = 39/45 (86%), Positives = 42/45 (93%) Frame = -1 Query: 481 QESARETVPWGPSIACSTPAAIEWVAQWKASNDPSGRLIASHNDA 347 Q+SARETVPWGPSIACSTPAAIEWV QWKASNDPSGR I+SH+ A Sbjct: 507 QDSARETVPWGPSIACSTPAAIEWVEQWKASNDPSGRFISSHDSA 551
>ASNS_ASPOF (P31752) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (AS) Length = 589 Score = 55.8 bits (133), Expect = 6e-08 Identities = 27/45 (60%), Positives = 31/45 (68%) Frame = -1 Query: 481 QESARETVPWGPSIACSTPAAIEWVAQWKASNDPSGRLIASHNDA 347 Q SAR TVP GPSIACST AIEW A+W + DPSGR +D+ Sbjct: 507 QNSARFTVPGGPSIACSTAKAIEWDARWSNNLDPSGRAALGVHDS 551
>ASNS1_PEA (P19251) Asparagine synthetase, nodule [glutamine-hydrolyzing] (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase) Length = 585 Score = 54.3 bits (129), Expect = 2e-07 Identities = 25/37 (67%), Positives = 27/37 (72%) Frame = -1 Query: 481 QESARETVPWGPSIACSTPAAIEWVAQWKASNDPSGR 371 Q SAR TVP GPS+ACST AIEW A W + DPSGR Sbjct: 508 QNSARLTVPGGPSVACSTEKAIEWDASWSNNLDPSGR 544
>ASNS2_PEA (P19252) Asparagine synthetase, root [glutamine-hydrolyzing] (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase) Length = 582 Score = 53.1 bits (126), Expect = 4e-07 Identities = 24/45 (53%), Positives = 30/45 (66%) Frame = -1 Query: 481 QESARETVPWGPSIACSTPAAIEWVAQWKASNDPSGRLIASHNDA 347 Q SAR TVP GP++ACST A+EW A W + DPSGR +D+ Sbjct: 507 QNSARLTVPGGPTVACSTAKAVEWDAAWSNNLDPSGRAALGVHDS 551
>ASNS_ORYSA (Q43011) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 590 Score = 53.1 bits (126), Expect = 4e-07 Identities = 24/45 (53%), Positives = 30/45 (66%) Frame = -1 Query: 481 QESARETVPWGPSIACSTPAAIEWVAQWKASNDPSGRLIASHNDA 347 + +AR TVP GPS+ACST A+EW A W + DPSGR +DA Sbjct: 507 KNAARLTVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHDA 551
>ASNS1_LOTJA (P49092) Asparagine synthetase [glutamine-hydrolyzing] 1 (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase 1) Length = 585 Score = 52.4 bits (124), Expect = 6e-07 Identities = 23/37 (62%), Positives = 27/37 (72%) Frame = -1 Query: 481 QESARETVPWGPSIACSTPAAIEWVAQWKASNDPSGR 371 Q SAR TVP GP++ACST A+EW A W + DPSGR Sbjct: 507 QNSARLTVPGGPTVACSTAKAVEWDAAWSNNLDPSGR 543
>ASNS_TRIVS (O24661) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 585 Score = 52.0 bits (123), Expect = 8e-07 Identities = 23/44 (52%), Positives = 28/44 (63%) Frame = -1 Query: 481 QESARETVPWGPSIACSTPAAIEWVAQWKASNDPSGRLIASHND 350 Q SA+ TVP GPS+ACST A+ W A W + DPSGR +D Sbjct: 507 QNSAKLTVPGGPSVACSTATAVAWDASWSKNLDPSGRAATGVHD 550
>ASNB_ECOLI (P22106) Asparagine synthetase B [glutamine-hydrolyzing] (EC| 6.3.5.4) Length = 553 Score = 50.8 bits (120), Expect = 2e-06 Identities = 23/43 (53%), Positives = 28/43 (65%) Frame = -1 Query: 475 SARETVPWGPSIACSTPAAIEWVAQWKASNDPSGRLIASHNDA 347 SA E VP GPS+ACS+ AIEW +K +DPSGR + H A Sbjct: 509 SAAECVPGGPSVACSSAKAIEWDEAFKKMDDPSGRAVGVHQSA 551
>ASNS2_LOTJA (P49093) Asparagine synthetase [glutamine-hydrolyzing] 2 (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase 2) Length = 585 Score = 50.4 bits (119), Expect = 2e-06 Identities = 25/45 (55%), Positives = 29/45 (64%) Frame = -1 Query: 481 QESARETVPWGPSIACSTPAAIEWVAQWKASNDPSGRLIASHNDA 347 Q SAR +VP G SIACST AIEW A W + DPSGR +D+ Sbjct: 507 QNSARLSVPGGASIACSTEKAIEWDAAWSNNLDPSGRAALGVHDS 551
>ASNS_ARATH (P49078) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 583 Score = 50.1 bits (118), Expect = 3e-06 Identities = 22/37 (59%), Positives = 26/37 (70%) Frame = -1 Query: 481 QESARETVPWGPSIACSTPAAIEWVAQWKASNDPSGR 371 Q SAR TVP G ++ACST A+EW A W + DPSGR Sbjct: 507 QNSARLTVPGGATVACSTAKAVEWDASWSNNMDPSGR 543
>ASNS_BRAOL (P49091) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 585 Score = 50.1 bits (118), Expect = 3e-06 Identities = 22/37 (59%), Positives = 26/37 (70%) Frame = -1 Query: 481 QESARETVPWGPSIACSTPAAIEWVAQWKASNDPSGR 371 Q SAR TVP G ++ACST A+EW A W + DPSGR Sbjct: 508 QNSARLTVPGGATVACSTAKAVEWDASWSNNMDPSGR 544
>JARD2_HUMAN (Q92833) Jumonji protein (Jumonji/ARID domain-containing protein 2)| Length = 1246 Score = 30.4 bits (67), Expect = 2.6 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +3 Query: 126 PAAAPMAYGSSVRGHAHTHTHPP 194 PAAAP GSS +G A TH HPP Sbjct: 270 PAAAPST-GSSAKGLAATHHHPP 291
>NBEAL_HUMAN (Q6ZS30) Neurobeachin-like 1 (Amyotrophic lateral sclerosis 2| chromosomal region candidate gene 17 protein) Length = 1314 Score = 29.3 bits (64), Expect = 5.7 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = +3 Query: 357 WEAMSRPEGSLEAFHWATH-SMAAGVLHAML 446 +E P G+++ FH+ TH S +AGV+H ++ Sbjct: 790 YENFEDPMGTIDKFHYGTHYSNSAGVMHYLI 820
>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1) Length = 451 Score = 28.9 bits (63), Expect = 7.5 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = +3 Query: 168 HAHTHTHPPRPNQLARAATA 227 H H H HPP P Q RAA A Sbjct: 48 HHHHHHHPPPPQQPQRAAAA 67
>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)| Length = 387 Score = 28.9 bits (63), Expect = 7.5 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = +3 Query: 168 HAHTHTHPPRPNQLARAATA 227 H H H HPP P Q RAA A Sbjct: 48 HHHHHHHPPPPQQPQRAAAA 67
>TCB1_RABIT (P06333) T-cell receptor beta chain ANA 11| Length = 319 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/33 (39%), Positives = 15/33 (45%) Frame = +3 Query: 135 APMAYGSSVRGHAHTHTHPPRPNQLARAATAST 233 AP + R H H H PRP QL+ A T Sbjct: 105 APTRTYAHTRAPTHVHPHKPRPRQLSAALLLPT 137
>HXD8_MOUSE (P23463) Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4)| Length = 289 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Frame = +3 Query: 129 AAAPMAYGSSVRGHAHTHTHP-PRPN 203 AAA YG+S G H H HP P P+ Sbjct: 50 AAALQLYGNSAAGFPHAHPHPHPHPS 75 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,813,160 Number of Sequences: 219361 Number of extensions: 459549 Number of successful extensions: 1901 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1811 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1891 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
