>VE1_HPV63 (Q07847) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 618

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +1

Query: 100 LTRRHKESRTL--YWVLAMWRIRXTT 171
           LTR +K ++T   YWV+A+W +  T+
Sbjct: 190 LTRAYKNNKTCCSYWVIAVWGVTSTS 215


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,214,127
Number of Sequences: 219361
Number of extensions: 355975
Number of successful extensions: 973
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)