ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32n09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL162504.12| Human DNA sequence from clone RP11-199O14 on ch... 40 1.9
2ref|XM_537454.2| PREDICTED: Canis familiaris similar to discs la... 38 7.5
3gb|AC095049.3| Homo sapiens BAC clone RP11-263F19 from 4, comple... 38 7.5
4gb|AC093754.2| Homo sapiens BAC clone RP11-51G24 from 4, complet... 38 7.5
5emb|AL929167.10| Mouse DNA sequence from clone RP23-5F14 on chro... 38 7.5

>emb|AL162504.12| Human DNA sequence from clone RP11-199O14 on chromosome 20 Contains
            part of a novel gene, complete sequence
          Length = 105757

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 48   gaagggtgaaagactggagatggc 71
            |||||| |||||||||||||||||
Sbjct: 3507 gaagggggaaagactggagatggc 3484



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>ref|XM_537454.2| PREDICTED: Canis familiaris similar to discs large homolog 7
            (LOC480331), mRNA
          Length = 2556

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 13   gctttcaactatgcctaaaacca 35
            |||||||||||| ||||||||||
Sbjct: 2040 gctttcaactattcctaaaacca 2062



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>gb|AC095049.3| Homo sapiens BAC clone RP11-263F19 from 4, complete sequence
          Length = 86308

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 27/30 (90%)
 Strand = Plus / Minus

                                         
Query: 29  aaaaccatgggaaagcntggaagggtgaaa 58
           |||||||||||||||  |||||| ||||||
Sbjct: 631 aaaaccatgggaaagactggaagagtgaaa 602



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>gb|AC093754.2| Homo sapiens BAC clone RP11-51G24 from 4, complete sequence
          Length = 149920

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 27/30 (90%)
 Strand = Plus / Minus

                                            
Query: 29     aaaaccatgggaaagcntggaagggtgaaa 58
              |||||||||||||||  |||||| ||||||
Sbjct: 148551 aaaaccatgggaaagactggaagagtgaaa 148522



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>emb|AL929167.10| Mouse DNA sequence from clone RP23-5F14 on chromosome 2, complete
              sequence
          Length = 148751

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 46     tggaagggtgaaagactgg 64
              |||||||||||||||||||
Sbjct: 105678 tggaagggtgaaagactgg 105660


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 529,397
Number of Sequences: 3902068
Number of extensions: 529397
Number of successful extensions: 34986
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34978
Number of HSP's gapped (non-prelim): 8
length of query: 156
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 134
effective length of database: 17,147,199,772
effective search space: 2297724769448
effective search space used: 2297724769448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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