ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags33b22 |
|---|---|
| Clone Library Name | barley_pub |
>CTDSL_MOUSE (P58465) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) Length = 276 Score = 77.4 bits (189), Expect = 2e-14 Identities = 36/80 (45%), Positives = 50/80 (62%) Frame = -2 Query: 461 LF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYNDPF 282 +F R F ESCVF Y KDL+ +G +L+KV I+DN+P + N +P++SW++D Sbjct: 187 VFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMT 246 Query: 281 DEGLSQLIPFLETLAVADDV 222 D L LIPF E L+ DDV Sbjct: 247 DTELLDLIPFFEGLSREDDV 266
>CTDSL_HUMAN (O15194) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Small CTD phosphatase 3) (SCP3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) (RBSP3) (YA22 protei Length = 276 Score = 77.4 bits (189), Expect = 2e-14 Identities = 36/80 (45%), Positives = 50/80 (62%) Frame = -2 Query: 461 LF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYNDPF 282 +F R F ESCVF Y KDL+ +G +L+KV I+DN+P + N +P++SW++D Sbjct: 187 VFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMT 246 Query: 281 DEGLSQLIPFLETLAVADDV 222 D L LIPF E L+ DDV Sbjct: 247 DTELLDLIPFFEGLSREDDV 266
>CTDSL_CHICK (Q9PTJ6) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) Length = 275 Score = 75.9 bits (185), Expect = 5e-14 Identities = 35/86 (40%), Positives = 53/86 (61%) Frame = -2 Query: 461 LF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYNDPF 282 +F R F ESCVF Y KDL+ +G +L+KV I+DN+P + N +P++SW++D Sbjct: 186 VFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMT 245 Query: 281 DEGLSQLIPFLETLAVADDVRPIIAK 204 D L LIPF E L+ ++V ++ K Sbjct: 246 DTELLDLIPFFEGLSKEEEVYSMLHK 271
>CTDS1_MOUSE (P58466) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (Golli-interacting protein) (GIP) Length = 261 Score = 75.1 bits (183), Expect = 9e-14 Identities = 34/83 (40%), Positives = 50/83 (60%) Frame = -2 Query: 458 F*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYNDPFD 279 F R F ESCVF Y KDL+ +G DL +V I+DN+P + +N +P+ SW+++ D Sbjct: 172 FRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSD 231 Query: 278 EGLSQLIPFLETLAVADDVRPII 210 L L+PF E L+ DDV ++ Sbjct: 232 TELHDLLPFFEQLSRVDDVYSVL 254
>CTDS1_HUMAN (Q9GZU7) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (NLI-IF) Length = 261 Score = 75.1 bits (183), Expect = 9e-14 Identities = 34/83 (40%), Positives = 50/83 (60%) Frame = -2 Query: 458 F*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYNDPFD 279 F R F ESCVF Y KDL+ +G DL +V I+DN+P + +N +P+ SW+++ D Sbjct: 172 FRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSD 231 Query: 278 EGLSQLIPFLETLAVADDVRPII 210 L L+PF E L+ DDV ++ Sbjct: 232 TELHDLLPFFEQLSRVDDVYSVL 254
>TIM50_YEAST (Q02776) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 476 Score = 74.7 bits (182), Expect = 1e-13 Identities = 41/94 (43%), Positives = 56/94 (59%), Gaps = 2/94 (2%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 ++LDP + F E CV+ + + KDL+ + DL+KV IID P ++LQ N IP+ Sbjct: 250 EKLDPIHAFVSYNLFKEHCVYKDGVHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPM 309 Query: 305 ESWYNDPFDEGLSQLIPFLETLAV--ADDVRPII 210 E W N D+ L +LIPFLE LA DVRPI+ Sbjct: 310 EPW-NGEADDKLVRLIPFLEYLATQQTKDVRPIL 342
>CTDS2_HUMAN (O14595) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 2 (EC 3.1.3.16) (Small CTD phosphatase 2) (SCP2) (Nuclear LIM interactor-interacting factor 2) (NLI-interacting factor 2) (Protein OS-4) Length = 271 Score = 74.3 bits (181), Expect = 2e-13 Identities = 35/80 (43%), Positives = 49/80 (61%) Frame = -2 Query: 461 LF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYNDPF 282 +F R F ESCVF + Y KDL+ +G DL K I+DN+P + N +P++SW++D Sbjct: 182 VFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMA 241 Query: 281 DEGLSQLIPFLETLAVADDV 222 D L LIP E L+ A+DV Sbjct: 242 DTELLNLIPIFEELSGAEDV 261
>CTDS2_MOUSE (Q8BX07) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 2 (EC 3.1.3.16) Length = 270 Score = 73.2 bits (178), Expect = 4e-13 Identities = 34/80 (42%), Positives = 48/80 (60%) Frame = -2 Query: 461 LF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYNDPF 282 +F R F E+CVF + Y KDL+ +G DL K I+DN+P + N +P++SW++D Sbjct: 181 VFRARLFREACVFHQGCYVKDLSRLGRDLRKTVILDNSPASYIFHPENAVPVQSWFDDMA 240 Query: 281 DEGLSQLIPFLETLAVADDV 222 D L LIP E L+ DDV Sbjct: 241 DTELLNLIPVFEELSGTDDV 260
>TIM50_CANGA (Q6FRX4) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 485 Score = 67.8 bits (164), Expect = 1e-11 Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 2/94 (2%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 +++DP + F E CV+ + + KDL+ + DL KV IID ++LQ N IP+ Sbjct: 256 EKMDPIHAFISYNLFKEHCVYKDGVHIKDLSKLNRDLKKVMIIDTDENSYKLQPENAIPM 315 Query: 305 ESWYNDPFDEGLSQLIPFLETLAV--ADDVRPII 210 + W + D+ L +LIPFLE +A +DVRPI+ Sbjct: 316 DPW-DGKADDKLLRLIPFLEYMATQQVEDVRPIL 348
>YHG4_YEAST (P38757) Hypothetical 50.6 kDa protein in RPL14B-GPA1 intergenic| region Length = 446 Score = 67.0 bits (162), Expect = 3e-11 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 11/99 (11%) Frame = -2 Query: 458 F*XRFFXESCVFTES-GYTKDLTVI----------GVDLAKVAIIDNTPQVFQLQVNNGI 312 F R++ CV + GY KDL+++ L V IIDN+P + + V+N I Sbjct: 341 FSKRYYRSDCVLRDGVGYIKDLSIVKDSEENGKGSSSSLDDVIIIDNSPVSYAMNVDNAI 400 Query: 311 PIESWYNDPFDEGLSQLIPFLETLAVADDVRPIIAKRFG 195 +E W +DP D L L+PFLE + + DVR I+A + G Sbjct: 401 QVEGWISDPTDTDLLNLLPFLEAMRYSTDVRNILALKHG 439
>YA22_SCHPO (Q09695) Hypothetical protein C2F7.02c in chromosome I| Length = 325 Score = 67.0 bits (162), Expect = 3e-11 Identities = 33/80 (41%), Positives = 46/80 (57%) Frame = -2 Query: 449 RFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYNDPFDEGL 270 R F E+C E + KDL+ +G +L IIDN+P + ++ +PI SW+ND D L Sbjct: 242 RLFREACCNYEGNFVKDLSQLGRNLEDSIIIDNSPSSYIFHPSHAVPISSWFNDMHDMEL 301 Query: 269 SQLIPFLETLAVADDVRPII 210 LIPFLE LA DV ++ Sbjct: 302 IDLIPFLEHLARVPDVSTVL 321
>TIM50_KLULA (Q6CM45) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 480 Score = 66.6 bits (161), Expect = 3e-11 Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 2/94 (2%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 ++LDP + F E C++ + + KDL+ + DL KV IID F+LQ N I + Sbjct: 253 EKLDPIHAFITYNLFKEHCLYKDGVHIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYL 312 Query: 305 ESWYNDPFDEGLSQLIPFLETLAV--ADDVRPII 210 E W + D+ L +LIPFLE LA DVRPI+ Sbjct: 313 EPW-DGKADDRLLRLIPFLEYLATQQVSDVRPIL 345
>TIM50_CRYNE (Q5KNV7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 516 Score = 66.2 bits (160), Expect = 4e-11 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 2/94 (2%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 +++DP R F ES + KD++ + D +KV ++D P+ LQ NGI + Sbjct: 294 EKIDPYQAFMPYRLFRESTRSVKGKVVKDISFLNRDPSKVIVLDVNPEHVALQPENGIVL 353 Query: 305 ESWYNDPFDEGLSQLIPFLETLAVAD--DVRPII 210 + W P D+GL +IPFLE++ + + DVRPI+ Sbjct: 354 QPWNGSPGDKGLVDMIPFLESIGIFNPADVRPIL 387
>PSR2_YEAST (Q07949) Probable phosphatase PSR2 (EC 3.1.3.-) (Plasma membrane| sodium response protein 2) Length = 397 Score = 64.3 bits (155), Expect = 2e-10 Identities = 32/83 (38%), Positives = 47/83 (56%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 D LDP T+ R F E+C E Y K+L+ IG L++ I+DN+P + + +PI Sbjct: 301 DTLDPNGTIH-HRLFREACYNYEGNYIKNLSQIGRPLSETIILDNSPASYIFHPQHAVPI 359 Query: 305 ESWYNDPFDEGLSQLIPFLETLA 237 SW++D D L +IP LE L+ Sbjct: 360 SSWFSDTHDNELLDIIPLLEDLS 382
>TIM50_USTMA (Q4PEW9) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 493 Score = 62.8 bits (151), Expect = 5e-10 Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 ++LDP F ESC + KDL + DL+KV ++D P F L NGI + Sbjct: 279 EKLDPDRRFITYTLFRESCRTVDGKLVKDLNHLNRDLSKVVVVDTNPDSFHLHPENGILV 338 Query: 305 ESWYNDPFDEGLSQLIPFLETLAV--ADDVRPII 210 + W + D L LIPF E + + DDVR I Sbjct: 339 KPWKGEREDRELIGLIPFFEAIGIYNIDDVRNTI 372
>TIM50_DEBHA (Q6BVY9) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 471 Score = 62.4 bits (150), Expect = 6e-10 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 2/93 (2%) Frame = -2 Query: 482 RLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIE 303 +LDP + F E+C + + KDL+++ DL K +ID + +Q +N IP++ Sbjct: 249 KLDPFHAYVSYALFREACRYKDGKLVKDLSLLNRDLGKTVLIDVEEDSWSMQPDNAIPMK 308 Query: 302 SWYNDPFDEGLSQLIPFLETLAV--ADDVRPII 210 W + +D+ L +LIPFLE LA DVRPI+ Sbjct: 309 PW-DGSYDDTLVKLIPFLEYLATQPVKDVRPIL 340
>TIM50_ASPFU (Q4WI16) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 501 Score = 62.0 bits (149), Expect = 8e-10 Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 2/80 (2%) Frame = -2 Query: 443 FXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYNDPFDEGLSQ 264 F E+ + + Y KDL+ + DL+KV +ID + +LQ N I ++ W DP D+ L Sbjct: 294 FREATRYKDGEYIKDLSYLNRDLSKVILIDTKEEHARLQPENAIILDKWLGDPKDKNLVA 353 Query: 263 LIPFLETLA--VADDVRPII 210 LIPFLE +A +DVRP++ Sbjct: 354 LIPFLEYIAGMGVEDVRPVL 373
>TIM50_ASHGO (Q75A73) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 476 Score = 61.6 bits (148), Expect = 1e-09 Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 2/94 (2%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 ++LDP F + CV+ + + KDL+ + DL K IID P +LQ+ N I Sbjct: 249 EKLDPIRAFITYNLFKDHCVYKDGIHIKDLSHLNRDLGKTLIIDTDPNSVKLQMENAILA 308 Query: 305 ESWYNDPFDEGLSQLIPFLETLAV--ADDVRPII 210 E W + D+ L + IPFLE L +DVRPI+ Sbjct: 309 EPW-DGKADDALLRYIPFLEYLVTQPINDVRPIL 341
>PSR1_YEAST (Q07800) Phosphatase PSR1 (EC 3.1.3.-) (Plasma membrane sodium| response protein 1) Length = 427 Score = 61.2 bits (147), Expect = 1e-09 Identities = 29/72 (40%), Positives = 42/72 (58%) Frame = -2 Query: 449 RFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYNDPFDEGL 270 R F E+C E Y K+L+ IG L+ + I+DN+P + + IPI SW++D D L Sbjct: 342 RLFREACYNYEGNYIKNLSQIGRPLSDIIILDNSPASYIFHPQHAIPISSWFSDTHDNEL 401 Query: 269 SQLIPFLETLAV 234 +IP LE L+V Sbjct: 402 LDIIPLLEDLSV 413
>TIM50_SCHPO (O13636) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 452 Score = 60.1 bits (144), Expect = 3e-09 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 2/94 (2%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 D++DP + ES + + KDL+ + DL++V +ID P+ + Q +N I + Sbjct: 235 DKIDPYHVSISAVLTRESSKYEKGKVIKDLSYLNRDLSRVIMIDTNPESWSKQPDNAIAM 294 Query: 305 ESWYNDPFDEGLSQLIPFLETLAVAD--DVRPII 210 W +P D+ L LIP LE +A+ D DVRP++ Sbjct: 295 APWTGNPKDKELVGLIPLLEFIAIMDIKDVRPVL 328
>TIM50_CANAL (Q59W44) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 469 Score = 60.1 bits (144), Expect = 3e-09 Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 2/94 (2%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 ++LDP + F E+C + + KDL+++ DL K +ID LQ N I + Sbjct: 246 NKLDPYHAYISYALFREACRYKDGKLIKDLSLLNRDLGKTVMIDVDEDSAALQPENSIIV 305 Query: 305 ESWYNDPFDEGLSQLIPFLETLAV--ADDVRPII 210 + W P DE L LIPFLE LA DVRPI+ Sbjct: 306 KKWEGQP-DEYLISLIPFLEYLATQPVKDVRPIL 338
>TIM50_YARLI (Q6CDV7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 466 Score = 59.7 bits (143), Expect = 4e-09 Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Frame = -2 Query: 482 RLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIE 303 +LDP + F E + + KDL+++ D+ K+ IID Q N IPIE Sbjct: 252 KLDPYHAWFSHVLTREHTTYEDGKLVKDLSLMNRDMGKIIIIDPDTGCTMKQPENSIPIE 311 Query: 302 SWYNDPFDEGLSQLIPFLETLAV--ADDVRPII 210 W P D+ L +LIPFLE L +DVRPI+ Sbjct: 312 PWKGTPGDKELVKLIPFLEWLVSQNVNDVRPIL 344
>TIM50_EMENI (Q5B4P0) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 532 Score = 58.2 bits (139), Expect = 1e-08 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 2/80 (2%) Frame = -2 Query: 443 FXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYNDPFDEGLSQ 264 F E+ + + Y KDL+ + DL+KV +ID + +LQ N I ++ W +P D+ L Sbjct: 323 FREATRYKDGEYIKDLSYLNRDLSKVILIDTKEEHARLQPENAIILDKWNGNPKDKTLVA 382 Query: 263 LIPFLETLA--VADDVRPII 210 LIPFLE LA DDVR ++ Sbjct: 383 LIPFLEYLAGMGVDDVRTVL 402
>TIM50_NEUCR (Q874C1) Import inner membrane translocase subunit tim-50,| mitochondrial precursor Length = 540 Score = 53.9 bits (128), Expect = 2e-07 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Frame = -2 Query: 443 FXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYNDPFDEGLSQ 264 F E+ + + KDL+ + DL+KV IID P+ + Q N I + W DP D L Sbjct: 320 FREATKYKDGEIVKDLSYLNRDLSKVIIIDTDPKHVRAQPENAIVLPKWKGDPKDTELVS 379 Query: 263 LIPFLETLAVAD--DVRPII 210 L+PFLE + + DVR ++ Sbjct: 380 LVPFLEFIHTMNFPDVRKVL 399
>TIM50_GIBZE (Q4I099) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 525 Score = 51.2 bits (121), Expect = 1e-06 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Frame = -2 Query: 482 RLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIE 303 +LDP + + E+ F + KDL+ + DL+KV IID + + Q +N I ++ Sbjct: 297 KLDPFRLIL-WPLYREATKFEDGEIVKDLSYLNRDLSKVIIIDTKAKHVRNQPDNAIILD 355 Query: 302 SWYNDPFDEGLSQLIPFLETLAVA--DDVRPII 210 W D D+ L LIPFLE + DVR +I Sbjct: 356 PWKGDKDDKNLVNLIPFLEYIHTMQYSDVRKVI 388
>TIM50_MOUSE (Q9D880) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 51.2 bits (121), Expect = 1e-06 Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 D +DP + R F ++ + E + KD++ + D A+V ++D + F+LQ NG+ + Sbjct: 206 DSVDPHGFIS-YRLFRDATRYMEGHHVKDISCLNRDPARVVVVDCKKEAFRLQPFNGVAL 264 Query: 305 ESWYNDPFDEGLSQLIPFLETLAV--ADDVRPII 210 W + D L L FL+T+A+ +DVR ++ Sbjct: 265 RPWDGNSDDRVLLDLSAFLKTIALNQVEDVRTVL 298
>TIM50_BOVIN (Q3SZB3) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 355 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 D +DP + R F ++ + + + KD++ + D A+V ++D + F+LQ NG+ + Sbjct: 208 DSVDPHGFIS-YRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVAL 266 Query: 305 ESWYNDPFDEGLSQLIPFLETLAV--ADDVRPII 210 W + D L L FL+T+A+ +DVR ++ Sbjct: 267 RPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 300
>TIM50_PONPY (Q5RAJ8) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 D +DP + R F ++ + + + KD++ + D A+V ++D + F+LQ NG+ + Sbjct: 206 DSVDPHGFIS-YRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVAL 264 Query: 305 ESWYNDPFDEGLSQLIPFLETLAV--ADDVRPII 210 W + D L L FL+T+A+ +DVR ++ Sbjct: 265 RPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 298
>TIM50_HUMAN (Q3ZCQ8) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 D +DP + R F ++ + + + KD++ + D A+V ++D + F+LQ NG+ + Sbjct: 206 DSVDPHGFIS-YRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVAL 264 Query: 305 ESWYNDPFDEGLSQLIPFLETLAV--ADDVRPII 210 W + D L L FL+T+A+ +DVR ++ Sbjct: 265 RPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 298
>TIM50_BRARE (Q6NWD4) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 387 Score = 49.7 bits (117), Expect = 4e-06 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 2/94 (2%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 D +DP + R F ++ + E + KD++ + D +KV ++D + F LQ NG+ + Sbjct: 241 DSIDPQGFVM-YRLFRDATRYMEGHHVKDVSCLNRDTSKVIVVDCKREAFGLQPFNGLAL 299 Query: 305 ESWYNDPFDEGLSQLIPFLETLAVA--DDVRPII 210 W + D L L FL+T+A + +DVR ++ Sbjct: 300 CKWDGNSEDRTLYDLAAFLKTIATSGVEDVRSVL 333
>TIM50_PHYIN (Q5S7T7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor (NIF domain protein 3) Length = 409 Score = 49.7 bits (117), Expect = 4e-06 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 4/78 (5%) Frame = -2 Query: 425 FTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYN--DPFDEGLSQLIPF 252 + + KDL+ + DL +V I+D+ P +QLQ N IP+ + N D D L LIPF Sbjct: 244 YLNGAHVKDLSNLNRDLRQVVILDDDPAAYQLQPENAIPVTPFTNGRDRDDHELKDLIPF 303 Query: 251 LETLAV--ADDVRPIIAK 204 L+ LA D R +I + Sbjct: 304 LKALASERVPDFRQVIGE 321
>TI50C_DROME (Q9W4V8) Import inner membrane translocase subunit TIM50-C,| mitochondrial precursor Length = 428 Score = 41.2 bits (95), Expect = 0.001 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 D LDP + R ++ F + + K+L + DL KV ++D ++ +N + Sbjct: 287 DALDPNGYIM-YRLVRDATHFVDGHHVKNLDNLNRDLKKVIVVDWDANATKMHPDNTFGL 345 Query: 305 ESWYNDPFDEGLSQLIPFLETLAV--ADDVRPII 210 W+ + D L LI FL+ +A DDVR ++ Sbjct: 346 ARWHGNDDDGQLLDLIAFLKIIAQNNVDDVREVL 379
>TI50A_DROME (Q9V9P3) Import inner membrane translocase subunit TIM50-A,| mitochondrial precursor Length = 343 Score = 40.0 bits (92), Expect = 0.003 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 2/94 (2%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 D LDP + R + E +TK+L + DL++V ++D P L +N + + Sbjct: 198 DALDPYGYIK-YRLVRGATDLVEGQHTKNLDYLNRDLSRVIVVDCDPYTTPLHPDNSLVL 256 Query: 305 ESWYNDPFDEGLSQLIPFLETLA--VADDVRPII 210 W + D L L FL+ +A +DVR ++ Sbjct: 257 TKWLGNDDDVQLFDLTAFLQLIAEHQVNDVREVL 290
>TIM50_ARATH (Q8VYE2) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 376 Score = 38.1 bits (87), Expect = 0.013 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Frame = -2 Query: 485 DRLDPXNTLF*XRFFXESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPI 306 ++LDP N + + + + +DL+ + D K+ + LQ N +PI Sbjct: 249 EKLDP-NGYIRYKLARGATKYENGKHYRDLSKLNRDPKKILFVSANAFESTLQPENSVPI 307 Query: 305 ESWYNDPFDEGLSQLIPFLETLA--VADDVRPIIA 207 + + + D L LIPFLE +A D+RP++A Sbjct: 308 KPYKLEADDTALVDLIPFLEYVARNSPADIRPVLA 342
>BRCA1_MOUSE (P48754) Breast cancer type 1 susceptibility protein homolog| Length = 1812 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 54 PM*IKLRKRQVSTSSVNVSCKFLSLYVSNQQTLPNTC 164 P+ ++L K VST ++ CKF L + NQ+ P+ C Sbjct: 25 PICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQC 61
>BRCA1_BOVIN (Q864U1) Breast cancer type 1 susceptibility protein homolog| Length = 1849 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 54 PM*IKLRKRQVSTSSVNVSCKFLSLYVSNQQTLPNTC 164 P+ ++L K VST ++ CKF L + NQ+ P+ C Sbjct: 25 PICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQC 61
>BRCA1_RAT (O54952) Breast cancer type 1 susceptibility protein homolog| Length = 1817 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 54 PM*IKLRKRQVSTSSVNVSCKFLSLYVSNQQTLPNTC 164 P+ ++L K VST ++ CKF L + NQ+ P+ C Sbjct: 25 PICLELIKEPVSTQCDHIFCKFCMLKLLNQKKGPSQC 61
>BRCA1_CANFA (Q95153) Breast cancer type 1 susceptibility protein homolog| Length = 1878 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 54 PM*IKLRKRQVSTSSVNVSCKFLSLYVSNQQTLPNTC 164 P+ ++L K VST ++ CKF L + NQ+ P+ C Sbjct: 25 PICLELIKEPVSTKCDHIFCKFCMLKLLNQRKGPSQC 61
>BRCA1_PONPY (Q6J6J0) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 54 PM*IKLRKRQVSTSSVNVSCKFLSLYVSNQQTLPNTC 164 P+ ++L K VST ++ CKF L + NQ+ P+ C Sbjct: 25 PICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQC 61
>BRCA1_PANTR (Q9GKK8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 54 PM*IKLRKRQVSTSSVNVSCKFLSLYVSNQQTLPNTC 164 P+ ++L K VST ++ CKF L + NQ+ P+ C Sbjct: 25 PICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQC 61
>BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein (RING finger| protein 53) Length = 1863 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 54 PM*IKLRKRQVSTSSVNVSCKFLSLYVSNQQTLPNTC 164 P+ ++L K VST ++ CKF L + NQ+ P+ C Sbjct: 25 PICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQC 61
>BRCA1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 54 PM*IKLRKRQVSTSSVNVSCKFLSLYVSNQQTLPNTC 164 P+ ++L K VST ++ CKF L + NQ+ P+ C Sbjct: 25 PICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQC 61
>TRMU_RICTY (Q68X66) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 358 Score = 29.3 bits (64), Expect = 5.8 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%) Frame = +2 Query: 242 VSPGMESAEIIP--HQRGHYTS--SLWVYHYSLATGKPAECC 355 +S G++S+ + H++GH+ +L +Y Y +A GK CC Sbjct: 8 MSGGVDSSAVAAMLHEQGHHVIGITLQLYDYGIAVGKKNACC 49
>ECR_AEDAE (P49880) Ecdysone receptor (Ecdysteroid receptor)| (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH) Length = 675 Score = 29.3 bits (64), Expect = 5.8 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +2 Query: 248 PGMESAEIIPHQRGHYTSSLWVYHYSLATGKP 343 PG+E AE++ H + +Y +L +Y + G P Sbjct: 492 PGLEQAELVEHIQSYYIDTLRIYILNRHAGDP 523
>Y252_DROME (Q9W4C5) Hypothetical sodium-dependent transporter CG3252| Length = 641 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +3 Query: 273 SLIKGVIIPALYGYTIIHLQLENLRSVVNYG 365 SL+ G+ I A+ G +LQ+EN+R VV G Sbjct: 350 SLLGGITIFAILGNLAHNLQIENIRDVVRSG 380
>BRCA1_MACMU (Q6J6I9) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +3 Query: 54 PM*IKLRKRQVSTSSVNVSCKFLSLYVSNQQTLPNTC 164 P+ ++L K VST ++ C+F L + NQ+ P+ C Sbjct: 25 PICLELIKEPVSTKCDHIFCRFCMLKLLNQKKGPSQC 61 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,353,809 Number of Sequences: 219361 Number of extensions: 1351289 Number of successful extensions: 3031 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 2967 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3026 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
