ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33b21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC139170.2| Oryza sativa (japonica cultivar-group) chromosome... 86 2e-13
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
3dbj|AK120356.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 2e-13
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 86 2e-13
5gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome 42 2.1
6gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome 42 2.1
7emb|CT009558.5| M.truncatula DNA sequence from clone MTH2-72I11 ... 42 2.1
8emb|AL445427.23| Human DNA sequence from clone RP5-1091A7 on chr... 42 2.1
9gb|AC123903.2| Homo sapiens chromosome 3 clone RP11-182A24, comp... 42 2.1
10gb|AC183299.2| Pan troglodytes BAC clone CH251-263C8 from chromo... 42 2.1
11gb|AC091944.2| Homo sapiens chromosome 5 clone RP11-348M17, comp... 42 2.1
12emb|BX511120.8| Zebrafish DNA sequence from clone CH211-214C7 in... 42 2.1
13gb|AC034268.4| Homo sapiens chromosome 17, clone RP11-312B18, co... 42 2.1
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
15dbj|AP003516.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
16emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chr... 42 2.1
17gb|AF466200.2| Sorghum bicolor putative protein kinase gene, par... 42 2.1
18gb|AC115289.6| Mus musculus BAC clone RP23-57G16 from 13, comple... 42 2.1
19gb|AC154695.3| Mus musculus BAC clone RP24-341I23 from 13, compl... 42 2.1
20gb|AY110135.1| Zea mays CL28980_1 mRNA sequence 42 2.1
21gb|AF111710.1|AF111710 Oryza sativa subsp. indica putative dnaJ-... 42 2.1
22gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome 42 2.1
23gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 42 2.1
24ref|XM_634950.1| Dictyostelium discoideum hypothetical protein (... 40 8.3
25ref|XM_629259.1| Dictyostelium discoideum hypothetical protein (... 40 8.3
26gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
27gb|AC149035.2| X. tropicalis BAC clone ISB1-221I9 containing gen... 40 8.3
28ref|XM_706997.1| Candida albicans SC5314 putative mitochondrial ... 40 8.3
29ref|XM_706972.1| Candida albicans SC5314 putative mitochondrial ... 40 8.3
30gb|AC120411.9| Mus musculus chromosome 6, clone RP24-447O2, comp... 40 8.3
31gb|AC102257.5| Mus musculus chromosome 18, clone RP24-196N23, co... 40 8.3
32emb|AL954200.2| Pan troglodytes chromosome 22 clone PTB-419O23 m... 40 8.3
33gb|AC132242.2| Mus musculus BAC clone RP24-413O2 from chromosome... 40 8.3
34gb|AC130307.3| Homo sapiens chromosome 11, clone RP11-15D10, com... 40 8.3
35emb|AL807246.11| Human DNA sequence from clone RP11-461H3 on chr... 40 8.3
36emb|AL731573.8| Human DNA sequence from clone RP11-215C13 on chr... 40 8.3
37emb|AL596132.7| Human DNA sequence from clone RP11-30A1 on chrom... 40 8.3
38gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
39gb|AC080008.23| Homo sapiens 3 BAC RP11-615P1 (Roswell Park Canc... 40 8.3
40gb|AC160340.2| Mus musculus BAC clone RP23-436E24 from chromosom... 40 8.3
41emb|AL929185.14| Zebrafish DNA sequence from clone CH211-193L2 i... 40 8.3
42gb|AC151726.31| Medicago truncatula clone mth2-22e22, complete s... 40 8.3
43gb|AC093572.18| Pan troglodytes clone rp43-25g23, complete sequence 40 8.3
44gb|AC115082.3| Homo sapiens chromosome 11, clone CTD-2386P16, co... 40 8.3
45gb|AY039816.1| Fusarium oxysporum f. sp. ciceris transposon Fotc... 40 8.3
46gb|AY039815.1| Fusarium oxysporum f. sp. niveum transposon Fotci... 40 8.3
47dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
48gb|AC153986.8| Mus musculus 6 BAC RP24-105F24 (Roswell Park Canc... 40 8.3
49gb|AC078851.4| Homo sapiens BAC clone RP11-350N1 from 2, complet... 40 8.3
50dbj|BS000114.1| Pan troglodytes chromosome 22 clone:RP43-168A22,... 40 8.3
51gb|AC002994.2|AC002994 Homo sapiens chromosome 17, clone RP5-987... 40 8.3
52emb|CR848349.2| Xenopus tropicalis finished cDNA, clone TNeu085g12 40 8.3
53emb|CR926288.2| Xenopus tropicalis finished cDNA, clone TEgg143e20 40 8.3
54dbj|AP001712.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.3
55gb|AC097355.15| Mus musculus strain C57BL/6J chromosome 2 clone ... 40 8.3
56emb|AL929137.5| Mouse DNA sequence from clone RP23-412L18 on chr... 40 8.3
57dbj|AP000466.1| Homo sapiens genomic DNA, chromosome 21q22.1, cl... 40 8.3 
>gb|AC139170.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0058P12,
              complete sequence
          Length = 173073

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                          
Query: 492    atattcaagtctttgtatctaagaggaagctcttgcattaggtagtgattatcagccttg 551
              |||||||||||||| |||||||  ||||  |||| |||||||||| |||||||||| |||
Sbjct: 157629 atattcaagtctttatatctaactggaaagtcttccattaggtagcgattatcagctttg 157570

                                                     
Query: 552    ggaagngataatggcaaggnctcntcatncacacaatct 590
              ||||| || |||||||||| ||| || | |||| |||||
Sbjct: 157569 ggaagtgacaatggcaaggtctcttcgtccacagaatct 157531



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                 
Query: 105    aaaaatcagataagctcaaattgcagcataactgcttgactgtctaaaaat 155
              ||||||||| |||||||||||||||||| |||||| |||||| ||||||||
Sbjct: 158012 aaaaatcaggtaagctcaaattgcagcacaactgcatgactgcctaaaaat 157962
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                           
Query: 492     atattcaagtctttgtatctaagaggaagctcttgcattaggtagtgattatcagccttg 551
               |||||||||||||| |||||||  ||||  |||| |||||||||| |||||||||| |||
Sbjct: 4837264 atattcaagtctttatatctaactggaaagtcttccattaggtagcgattatcagctttg 4837323

                                                      
Query: 552     ggaagngataatggcaaggnctcntcatncacacaatct 590
               ||||| || |||||||||| ||| || | |||| |||||
Sbjct: 4837324 ggaagtgacaatggcaaggtctcttcgtccacagaatct 4837362



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                                  
Query: 105     aaaaatcagataagctcaaattgcagcataactgcttgactgtctaaaaat 155
               ||||||||| |||||||||||||||||| |||||| |||||| ||||||||
Sbjct: 4836881 aaaaatcaggtaagctcaaattgcagcacaactgcatgactgcctaaaaat 4836931
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>dbj|AK120356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067B07, full
            insert sequence
          Length = 4790

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                        
Query: 492  atattcaagtctttgtatctaagaggaagctcttgcattaggtagtgattatcagccttg 551
            |||||||||||||| |||||||  ||||  |||| |||||||||| |||||||||| |||
Sbjct: 4270 atattcaagtctttatatctaactggaaagtcttccattaggtagcgattatcagctttg 4211

                                                   
Query: 552  ggaagngataatggcaaggnctcntcatncacacaatct 590
            ||||| || |||||||||| ||| || | |||| |||||
Sbjct: 4210 ggaagtgacaatggcaaggtctcttcgtccacagaatct 4172



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 105  aaaaatcagataagctcaaattgcagcataactgcttgactgtctaaaaat 155
            ||||||||| |||||||||||||||||| |||||| |||||| ||||||||
Sbjct: 4652 aaaaatcaggtaagctcaaattgcagcacaactgcatgactgcctaaaaat 4602
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                           
Query: 492     atattcaagtctttgtatctaagaggaagctcttgcattaggtagtgattatcagccttg 551
               |||||||||||||| |||||||  ||||  |||| |||||||||| |||||||||| |||
Sbjct: 4856048 atattcaagtctttatatctaactggaaagtcttccattaggtagcgattatcagctttg 4856107

                                                      
Query: 552     ggaagngataatggcaaggnctcntcatncacacaatct 590
               ||||| || |||||||||| ||| || | |||| |||||
Sbjct: 4856108 ggaagtgacaatggcaaggtctcttcgtccacagaatct 4856146



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                                  
Query: 105     aaaaatcagataagctcaaattgcagcataactgcttgactgtctaaaaat 155
               ||||||||| |||||||||||||||||| |||||| |||||| ||||||||
Sbjct: 4855665 aaaaatcaggtaagctcaaattgcagcacaactgcatgactgcctaaaaat 4855715
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>gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome
          Length = 920079

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 147    tctaaaaatggagaaaaaatg 167
              |||||||||||||||||||||
Sbjct: 599628 tctaaaaatggagaaaaaatg 599648
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>gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome
          Length = 897405

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 147    tctaaaaatggagaaaaaatg 167
              |||||||||||||||||||||
Sbjct: 576351 tctaaaaatggagaaaaaatg 576371
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>emb|CT009558.5| M.truncatula DNA sequence from clone MTH2-72I11 on chromosome 3,
             complete sequence
          Length = 145085

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 160   aaaaaatggtataataataaa 180
             |||||||||||||||||||||
Sbjct: 60655 aaaaaatggtataataataaa 60635
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>emb|AL445427.23| Human DNA sequence from clone RP5-1091A7 on chromosome 1p22.2-31.1
             Contains the 5' end of the COL24A1 gene for collagen type
             XXIV alpha 1 and two CpG islands, complete sequence
          Length = 111132

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 149   taaaaatggagaaaaaatggt 169
             |||||||||||||||||||||
Sbjct: 44936 taaaaatggagaaaaaatggt 44916
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>gb|AC123903.2| Homo sapiens chromosome 3 clone RP11-182A24, complete sequence
          Length = 162351

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 345    aatactatcaacttataattt 365
              |||||||||||||||||||||
Sbjct: 124703 aatactatcaacttataattt 124683
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>gb|AC183299.2| Pan troglodytes BAC clone CH251-263C8 from chromosome 17, complete
             sequence
          Length = 170313

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 103   taaaaaatcagataagctcaaattg 127
             ||||||||||||||| |||||||||
Sbjct: 32213 taaaaaatcagataaactcaaattg 32189
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>gb|AC091944.2| Homo sapiens chromosome 5 clone RP11-348M17, complete sequence
          Length = 194624

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 264   atgtttgacagcatccctcat 284
             |||||||||||||||||||||
Sbjct: 70954 atgtttgacagcatccctcat 70934
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>emb|BX511120.8| Zebrafish DNA sequence from clone CH211-214C7 in linkage group 1,
             complete sequence
          Length = 204893

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   atggtataataataaatgatg 185
             |||||||||||||||||||||
Sbjct: 73151 atggtataataataaatgatg 73131
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>gb|AC034268.4| Homo sapiens chromosome 17, clone RP11-312B18, complete sequence
          Length = 198935

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 103    taaaaaatcagataagctcaaattg 127
              ||||||||||||||| |||||||||
Sbjct: 131369 taaaaaatcagataaactcaaattg 131393
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 257      tgaactcatgtttgacagcat 277
                |||||||||||||||||||||
Sbjct: 19852335 tgaactcatgtttgacagcat 19852315
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>dbj|AP003516.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0047D12
          Length = 145981

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 257   tgaactcatgtttgacagcat 277
             |||||||||||||||||||||
Sbjct: 75293 tgaactcatgtttgacagcat 75273
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>emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chromosome 2, complete
             sequence
          Length = 238545

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 505   tgtatctaagaggaagctctt 525
             |||||||||||||||||||||
Sbjct: 91365 tgtatctaagaggaagctctt 91385
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>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2,
              fertilization-independent endosperm proteins, hypothetical
              protein, putative non-LTR retroelement reverse
              transcriptase, OCL5 protein, tryptophan synthase
              beta-subunit, hypothetical proteins, putative AP
              endonuclease, putative RNA polymerase II complex component
              SRB7, putative beta-1,3-glucanase, hypothetical protein,
              TNP2-like protein, hypothetical protein, putative
              phosphate/phosphoenolpyruvate translocator, putative
              protein, hypothetical proteins, putative
              galactosyltransferase family, hypothetical protein,
              putative cytochrome P450 family, putative lipid transfer
              protein, putative photoreceptor-interacting protein, and
              hypothetical protein genes, complete cds; and hypothetical
              protein gene, partial cds
          Length = 202197

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 409    ccaagttcagttcctcatcaa 429
              |||||||||||||||||||||
Sbjct: 134990 ccaagttcagttcctcatcaa 134970
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>gb|AC115289.6| Mus musculus BAC clone RP23-57G16 from 13, complete sequence
          Length = 210109

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 342   gataatactatcaacttataatttc 366
             |||||||||| ||||||||||||||
Sbjct: 44480 gataatactagcaacttataatttc 44456
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>gb|AC154695.3| Mus musculus BAC clone RP24-341I23 from 13, complete sequence
          Length = 149545

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 342    gataatactatcaacttataatttc 366
              |||||||||| ||||||||||||||
Sbjct: 108444 gataatactagcaacttataatttc 108420
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>gb|AY110135.1| Zea mays CL28980_1 mRNA sequence
          Length = 941

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 77/97 (79%)
 Strand = Plus / Plus

                                                                       
Query: 504 ttgtatctaagaggaagctcttgcattaggtagtgattatcagccttgggaagngataat 563
           |||||||||||| ||  ||||| | |||||||   ||| ||| |||||||||| ||||| 
Sbjct: 524 ttgtatctaagaagatactcttcctttaggtaaccattttcaaccttgggaagtgataac 583

                                                
Query: 564 ggcaaggnctcntcatncacacaatcttgatatttta 600
           | ||||| ||| ||||  | | |||||||| ||||||
Sbjct: 584 gtcaaggtctcgtcatctatataatcttgacatttta 620
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>gb|AF111710.1|AF111710 Oryza sativa subsp. indica putative dnaJ-like protein, putative
           myb-related protein, putative farnesyl pyrophosphate
           synthase, and hypothetical protein genes, complete cds
          Length = 43422

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 257 tgaactcatgtttgacagcat 277
           |||||||||||||||||||||
Sbjct: 151 tgaactcatgtttgacagcat 171
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>gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome
          Length = 892758

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 147    tctaaaaatggagaaaaaatg 167
              |||||||||||||||||||||
Sbjct: 564531 tctaaaaatggagaaaaaatg 564551
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 158     agaaaaaatggtataataataaatg 182
               |||||| ||||||||||||||||||
Sbjct: 2907957 agaaaagatggtataataataaatg 2907981
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>ref|XM_634950.1| Dictyostelium discoideum hypothetical protein (DDB0204231), partial
           mRNA
          Length = 2844

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 49  tacaagtaaaaataataaca 68
           ||||||||||||||||||||
Sbjct: 285 tacaagtaaaaataataaca 304
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>ref|XM_629259.1| Dictyostelium discoideum hypothetical protein (DDB0220643), partial
            mRNA
          Length = 9216

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 352  tcaacttataatttccataa 371
            ||||||||||||||||||||
Sbjct: 5389 tcaacttataatttccataa 5408
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>gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1007D10,
             complete sequence
          Length = 153366

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 147   tctaaaaatggagaaaaaatggtataat 174
             ||||||| |||| |||||||||||||||
Sbjct: 86852 tctaaaagtggataaaaaatggtataat 86879
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>gb|AC149035.2| X. tropicalis BAC clone ISB1-221I9 containing gene for isl1, complete
             sequence
          Length = 59325

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 472   aaaggaatatccattaggtcatat 495
             ||||||||||||||||||| ||||
Sbjct: 50899 aaaggaatatccattaggtgatat 50922
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>ref|XM_706997.1| Candida albicans SC5314 putative mitochondrial ABC transporter
            (CaO19.1077), mRNA
          Length = 2253

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  gaaatcatcatccctcgttc 321
            ||||||||||||||||||||
Sbjct: 1811 gaaatcatcatccctcgttc 1792
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>ref|XM_706972.1| Candida albicans SC5314 putative mitochondrial ABC transporter
            (CaO19.8678), mRNA
          Length = 1869

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  gaaatcatcatccctcgttc 321
            ||||||||||||||||||||
Sbjct: 1796 gaaatcatcatccctcgttc 1777
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>gb|AC120411.9| Mus musculus chromosome 6, clone RP24-447O2, complete sequence
          Length = 202938

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   gttttctagaacttgttggt 232
             ||||||||||||||||||||
Sbjct: 12659 gttttctagaacttgttggt 12640
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>gb|AC102257.5| Mus musculus chromosome 18, clone RP24-196N23, complete sequence
          Length = 194837

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 393   agatgagataaaacctccaa 412
             ||||||||||||||||||||
Sbjct: 24698 agatgagataaaacctccaa 24717
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>emb|AL954200.2| Pan troglodytes chromosome 22 clone PTB-419O23 map q21.1, complete
             sequence
          Length = 139459

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 490   tcatattcaagtctttgtat 509
             ||||||||||||||||||||
Sbjct: 51802 tcatattcaagtctttgtat 51783
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>gb|AC132242.2| Mus musculus BAC clone RP24-413O2 from chromosome 18, complete sequence
          Length = 177442

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 393    agatgagataaaacctccaa 412
              ||||||||||||||||||||
Sbjct: 151837 agatgagataaaacctccaa 151856
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>gb|AC130307.3| Homo sapiens chromosome 11, clone RP11-15D10, complete sequence
          Length = 159817

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     aatttatgaggtaggtacaa 53
              ||||||||||||||||||||
Sbjct: 127363 aatttatgaggtaggtacaa 127344
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>emb|AL807246.11| Human DNA sequence from clone RP11-461H3 on chromosome 6 Contains the
             5' end of the UST gene for uronyl-2-sulfotransferase, a
             laminin receptor 1 (ribosomal protein SA, 67 kDa) (LAMR1)
             pseudogene and a CpG island, complete sequence
          Length = 124214

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   ctgtctaaaaatggagaaaa 163
             ||||||||||||||||||||
Sbjct: 49272 ctgtctaaaaatggagaaaa 49291
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>emb|AL731573.8| Human DNA sequence from clone RP11-215C13 on chromosome 10, complete
             sequence
          Length = 131465

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    aaaataataacagaatgaag 76
             ||||||||||||||||||||
Sbjct: 71037 aaaataataacagaatgaag 71056
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>emb|AL596132.7| Human DNA sequence from clone RP11-30A1 on chromosome 9 Contains part
             of the NTRK2 gene for Neurotrophic tyrosine kinase,
             receptor, type 2 (TRKB), complete sequence
          Length = 124156

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    taaaaataataacagaatga 74
             ||||||||||||||||||||
Sbjct: 91979 taaaaataataacagaatga 91960
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>gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_A10,
             complete sequence
          Length = 102275

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 147   tctaaaaatggagaaaaaatggtataat 174
             ||||||| |||| |||||||||||||||
Sbjct: 85692 tctaaaagtggataaaaaatggtataat 85719
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>gb|AC080008.23| Homo sapiens 3 BAC RP11-615P1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 197883

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   cagcatccctcatttctcct 291
             ||||||||||||||||||||
Sbjct: 38666 cagcatccctcatttctcct 38685
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>gb|AC160340.2| Mus musculus BAC clone RP23-436E24 from chromosome 12, complete
             sequence
          Length = 209911

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    acaagtaaaaataataacag 69
             ||||||||||||||||||||
Sbjct: 94681 acaagtaaaaataataacag 94700
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>emb|AL929185.14| Zebrafish DNA sequence from clone CH211-193L2 in linkage group 11,
             complete sequence
          Length = 141071

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    taggtacaagtaaaaataataaca 68
             ||||||||||| ||||||||||||
Sbjct: 66777 taggtacaagttaaaataataaca 66800
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>gb|AC151726.31| Medicago truncatula clone mth2-22e22, complete sequence
          Length = 127018

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 492   atattcaagtctttgtatct 511
             ||||||||||||||||||||
Sbjct: 31726 atattcaagtctttgtatct 31745
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>gb|AC093572.18| Pan troglodytes clone rp43-25g23, complete sequence
          Length = 195652

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 160  aaaaaatggtataataataa 179
            ||||||||||||||||||||
Sbjct: 9468 aaaaaatggtataataataa 9487
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>gb|AC115082.3| Homo sapiens chromosome 11, clone CTD-2386P16, complete sequence
          Length = 99781

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aatttatgaggtaggtacaa 53
             ||||||||||||||||||||
Sbjct: 58405 aatttatgaggtaggtacaa 58424
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>gb|AY039816.1| Fusarium oxysporum f. sp. ciceris transposon Fotci putative
            transposase gene, complete cds
          Length = 1935

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 148  ctaaaaatggagaaaaaatggtat 171
            ||||||||| ||||||||||||||
Sbjct: 1825 ctaaaaatgcagaaaaaatggtat 1802
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>gb|AY039815.1| Fusarium oxysporum f. sp. niveum transposon Fotci putative
            transposase gene, complete cds
          Length = 1923

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 148  ctaaaaatggagaaaaaatggtat 171
            ||||||||| ||||||||||||||
Sbjct: 1813 ctaaaaatgcagaaaaaatggtat 1790
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 147     tctaaaaatggagaaaaaatggtataat 174
               ||||||| |||| |||||||||||||||
Sbjct: 5400178 tctaaaagtggataaaaaatggtataat 5400205
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>gb|AC153986.8| Mus musculus 6 BAC RP24-105F24 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 162415

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  gttttctagaacttgttggt 232
            ||||||||||||||||||||
Sbjct: 8147 gttttctagaacttgttggt 8166
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>gb|AC078851.4| Homo sapiens BAC clone RP11-350N1 from 2, complete sequence
          Length = 201303

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 286    tctccttataaaaggtgaaa 305
              ||||||||||||||||||||
Sbjct: 177364 tctccttataaaaggtgaaa 177345
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>dbj|BS000114.1| Pan troglodytes chromosome 22 clone:RP43-168A22, map 22, complete
              sequences
          Length = 173403

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 490    tcatattcaagtctttgtat 509
              ||||||||||||||||||||
Sbjct: 166972 tcatattcaagtctttgtat 166953
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>gb|AC002994.2|AC002994 Homo sapiens chromosome 17, clone RP5-987K16, complete sequence
          Length = 143813

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 90    tataacaccttcctaaaaaatcag 113
             |||||||||||||| |||||||||
Sbjct: 88502 tataacaccttcctcaaaaatcag 88479
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>emb|CR848349.2| Xenopus tropicalis finished cDNA, clone TNeu085g12
          Length = 2936

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 142  gactgtctaaaaatggagaaaaaa 165
            ||||||||||||| ||||||||||
Sbjct: 2807 gactgtctaaaaagggagaaaaaa 2830
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>emb|CR926288.2| Xenopus tropicalis finished cDNA, clone TEgg143e20
          Length = 2054

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 142  gactgtctaaaaatggagaaaaaa 165
            ||||||||||||| ||||||||||
Sbjct: 1924 gactgtctaaaaagggagaaaaaa 1947
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>dbj|AP001712.1| Homo sapiens genomic DNA, chromosome 21q, section 56/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 490    tcatattcaagtctttgtat 509
              ||||||||||||||||||||
Sbjct: 128720 tcatattcaagtctttgtat 128701
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>gb|AC097355.15| Mus musculus strain C57BL/6J chromosome 2 clone rp23-304j8, complete
             sequence
          Length = 163774

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   tgtatgtaagtacacttcat 209
             ||||||||||||||||||||
Sbjct: 32422 tgtatgtaagtacacttcat 32441
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>emb|AL929137.5| Mouse DNA sequence from clone RP23-412L18 on chromosome 2, complete
              sequence
          Length = 221534

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    tgtatgtaagtacacttcat 209
              ||||||||||||||||||||
Sbjct: 117963 tgtatgtaagtacacttcat 117982
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>dbj|AP000466.1| Homo sapiens genomic DNA, chromosome 21q22.1, clone:B140B9, complete
             sequence
          Length = 119580

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 490   tcatattcaagtctttgtat 509
             ||||||||||||||||||||
Sbjct: 72007 tcatattcaagtctttgtat 71988


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,971,895
Number of Sequences: 3902068
Number of extensions: 6971895
Number of successful extensions: 208368
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 207961
Number of HSP's gapped (non-prelim): 407
length of query: 612
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 589
effective length of database: 17,143,297,704
effective search space: 10097402347656
effective search space used: 10097402347656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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