| Clone Name | rbags33b18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK106240.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-C10, full insert sequence Length = 1447 Score = 343 bits (173), Expect = 4e-91 Identities = 401/477 (84%) Strand = Plus / Minus Query: 75 tggaagctatatgaccctcccgatgcgggtatcaaccactgcaggctttgaaacttctga 134 |||| |||| |||||||| ||||| ||||||||||| |||| || |||||| | |||| Sbjct: 1353 tggaggctacatgaccctgccgatccgggtatcaacaactgttggttttgaaggtcctga 1294 Query: 135 gaactccaacgcgtgggccaacgttaacctacgattcttccaggcgtcttccgcccactc 194 || ||||| || | || || ||||| |||| |||| |||| || | ||| ||||| || Sbjct: 1293 aaattccaaggcttcagctaatgttaatctactattcctccaagcatgttctgcccattc 1234 Query: 195 cttcattcgctcgccttctgccttcctattcgactgaataagcaacagctctgcatactc 254 ||||| || || ||||| || | ||||| |||||||||||||||| ||||||||||| Sbjct: 1233 tttcatccgttcaccttcggctcttctatttgactgaataagcaacaattctgcatactc 1174 Query: 255 gcctctagcaagggagatgatgtctctccaatcgacctgccttcttgtgtcctcagaatt 314 ||||||||||||||||||||||| |||||||| | |||| | || ||||||| || Sbjct: 1173 tcctctagcaagggagatgatgtccctccaatccatctgcttgctcacaccctcagagtt 1114 Query: 315 gatggcaggtgctttcaatacttctagggccttcctgtatagcccctcctgaaccattat 374 |||||||| ||| | ||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1113 aatggcaggggctcttaatacttctagggccttcctgtataacccctcctgaaccattat 1054 Query: 375 tgaactagaaccttccgattttgctttcagtttgtacattctggctacacaggtcaatac 434 ||| ||||||||||| | |||||||||||||||||||||||| |||||||| |||||||| Sbjct: 1053 tgagctagaaccttctgcttttgctttcagtttgtacattctagctacacaagtcaatac 994 Query: 435 aataccaacctttgcgtgatttgaaccgaattgttcttcagccttctgtagtgctcttgt 494 ||| |||||||||| |||||||| || ||||| ||||||||||||| ||| || ||||| Sbjct: 993 aatgccaacctttgggtgatttgccccaaattgatcttcagccttctttagcgcccttgt 934 Query: 495 gagatagtcctctgcctcgtcgaacttcccagaatgagataaaagctggccgtatga 551 |||||| ||||||||||| ||||||||| ||||| |||||||||||||| ||||| Sbjct: 933 gagataatcctctgcctcactgaacttccctgaatgtgataaaagctggccatatga 877
>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence Length = 131860 Score = 141 bits (71), Expect = 3e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 359 cctcctgaaccattattgaactagaaccttccgattttgctttcagtttgtacattctgg 418 ||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| | Sbjct: 25894 cctcctgaaccattattgagctagaaccttctgcttttgctttcagtttgtacattctag 25953 Query: 419 ctacacaggtcaatacaataccaacctttgcgtgatttg 457 ||||||| ||||||||||| |||||||||| |||||||| Sbjct: 25954 ctacacaagtcaatacaatgccaacctttgggtgatttg 25992 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 305 cctcagaattgatggcaggtgctttcaatacttctagggccttcctgtatagcccct 361 ||||||| || |||||||| ||| | ||||||||||||||||||||||||| ||||| Sbjct: 25597 cctcagagttaatggcaggggctcttaatacttctagggccttcctgtataacccct 25653 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 458 aaccgaattgttcttcagccttctgtagtgctcttgtgagatagtcctctgcctc 512 |||| ||||| ||||||||||||| ||| || ||||||||||| ||||||||||| Sbjct: 26089 aaccaaattgatcttcagccttctttagcgcccttgtgagataatcctctgcctc 26143 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 256 cctctagcaagggagatgatgtctctccaatc 287 ||||||||||||||||||||||| |||||||| Sbjct: 25474 cctctagcaagggagatgatgtccctccaatc 25505 Score = 56.0 bits (28), Expect = 1e-04 Identities = 142/180 (78%) Strand = Plus / Plus Query: 75 tggaagctatatgaccctcccgatgcgggtatcaaccactgcaggctttgaaacttctga 134 |||| |||| |||||||| ||||| ||||||||||| |||| || |||||| | |||| Sbjct: 24678 tggaggctacatgaccctgccgatccgggtatcaacaactgttggttttgaaggtcctga 24737 Query: 135 gaactccaacgcgtgggccaacgttaacctacgattcttccaggcgtcttccgcccactc 194 || ||||| || | || || ||||| |||| |||| |||| || | ||| ||||| || Sbjct: 24738 aaattccaaggcttcagctaatgttaatctactattcctccaagcatgttctgcccattc 24797 Query: 195 cttcattcgctcgccttctgccttcctattcgactgaataagcaacagctctgcatactc 254 ||||| || || ||||| || | ||||| |||||||||||||||| ||||||||||| Sbjct: 24798 tttcatccgttcaccttcggctcttctatttgactgaataagcaacaattctgcatactc 24857
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 141 bits (71), Expect = 3e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 359 cctcctgaaccattattgaactagaaccttccgattttgctttcagtttgtacattctgg 418 ||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| | Sbjct: 22324259 cctcctgaaccattattgagctagaaccttctgcttttgctttcagtttgtacattctag 22324318 Query: 419 ctacacaggtcaatacaataccaacctttgcgtgatttg 457 ||||||| ||||||||||| |||||||||| |||||||| Sbjct: 22324319 ctacacaagtcaatacaatgccaacctttgggtgatttg 22324357 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 305 cctcagaattgatggcaggtgctttcaatacttctagggccttcctgtatagcccct 361 ||||||| || |||||||| ||| | ||||||||||||||||||||||||| ||||| Sbjct: 22323962 cctcagagttaatggcaggggctcttaatacttctagggccttcctgtataacccct 22324018 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 458 aaccgaattgttcttcagccttctgtagtgctcttgtgagatagtcctctgcctc 512 |||| ||||| ||||||||||||| ||| || ||||||||||| ||||||||||| Sbjct: 22324454 aaccaaattgatcttcagccttctttagcgcccttgtgagataatcctctgcctc 22324508 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 256 cctctagcaagggagatgatgtctctccaatc 287 ||||||||||||||||||||||| |||||||| Sbjct: 22323839 cctctagcaagggagatgatgtccctccaatc 22323870 Score = 56.0 bits (28), Expect = 1e-04 Identities = 142/180 (78%) Strand = Plus / Plus Query: 75 tggaagctatatgaccctcccgatgcgggtatcaaccactgcaggctttgaaacttctga 134 |||| |||| |||||||| ||||| ||||||||||| |||| || |||||| | |||| Sbjct: 22323043 tggaggctacatgaccctgccgatccgggtatcaacaactgttggttttgaaggtcctga 22323102 Query: 135 gaactccaacgcgtgggccaacgttaacctacgattcttccaggcgtcttccgcccactc 194 || ||||| || | || || ||||| |||| |||| |||| || | ||| ||||| || Sbjct: 22323103 aaattccaaggcttcagctaatgttaatctactattcctccaagcatgttctgcccattc 22323162 Query: 195 cttcattcgctcgccttctgccttcctattcgactgaataagcaacagctctgcatactc 254 ||||| || || ||||| || | ||||| |||||||||||||||| ||||||||||| Sbjct: 22323163 tttcatccgttcaccttcggctcttctatttgactgaataagcaacaattctgcatactc 22323222
>gb|AC132120.3| Mus musculus BAC clone RP23-479B19 from chromosome 8, complete sequence Length = 173226 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 311 aattgatggcaggtgctttcaa 332 |||||||||||||||||||||| Sbjct: 124287 aattgatggcaggtgctttcaa 124308
>gb|AC152115.2| Pichia stipitis clone JGIAHYZ-21P12, complete sequence Length = 39461 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 452 gatttgaaccgaattgttctt 472 ||||||||||||||||||||| Sbjct: 30834 gatttgaaccgaattgttctt 30814
>gb|AF121781.1| Homo sapiens chromosome 21q22.3 PAC 1031P17, complete sequence, containing part of SH3BGR gene and an unknown gene Length = 89421 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 gaattgttcttcagccttctg 482 ||||||||||||||||||||| Sbjct: 67991 gaattgttcttcagccttctg 68011
>gb|AC122355.4| Mus musculus BAC clone RP23-401L7 from chromosome 14, complete sequence Length = 198831 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 cctctagcaagggagatgatg 276 ||||||||||||||||||||| Sbjct: 139059 cctctagcaagggagatgatg 139079
>emb|AL163279.2|HS21C079 Homo sapiens chromosome 21 segment HS21C079 Length = 340000 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 gaattgttcttcagccttctg 482 ||||||||||||||||||||| Sbjct: 315801 gaattgttcttcagccttctg 315821
>ref|XM_971384.1| PREDICTED: Tribolium castaneum hypothetical protein LOC664207 (LOC664207), mRNA Length = 1194 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 attttgctttcagtttgtaca 412 ||||||||||||||||||||| Sbjct: 1092 attttgctttcagtttgtaca 1072
>emb|AL954226.2|PTB126M21 Pan troglodytes chromosome 22 BAC PTB-126M21, complete sequence Length = 188320 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 gaattgttcttcagccttctg 482 ||||||||||||||||||||| Sbjct: 21494 gaattgttcttcagccttctg 21514
>emb|AL954225.2|PTB448G23 Pan troglodytes chromosome 22 BAC PTB-448G23, complete sequence Length = 173384 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 gaattgttcttcagccttctg 482 ||||||||||||||||||||| Sbjct: 170283 gaattgttcttcagccttctg 170303
>ref|XM_742971.1| Aspergillus fumigatus Af293 nicotinamide nucleotide transhydrogenase (Afu5g02780) partial mRNA Length = 3267 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 aacctacgattcttccaggc 179 |||||||||||||||||||| Sbjct: 2321 aacctacgattcttccaggc 2340
>gb|AC124576.4| Mus musculus BAC clone RP23-162H6 from chromosome 16, complete sequence Length = 233527 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 ttgctttcagtttgtacatt 414 |||||||||||||||||||| Sbjct: 136854 ttgctttcagtttgtacatt 136873
>gb|AC127246.3| Mus musculus BAC clone RP24-424L20 from chromosome 16, complete sequence Length = 181475 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 ttgctttcagtttgtacatt 414 |||||||||||||||||||| Sbjct: 165644 ttgctttcagtttgtacatt 165625
>gb|AC129315.3| Mus musculus BAC clone RP23-407E2 from chromosome 18, complete sequence Length = 183462 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 291 ctgccttcttgtgtcctcagaatt 314 |||||||||| ||||||||||||| Sbjct: 172297 ctgccttcttatgtcctcagaatt 172320
>gb|AC121886.2| Mus musculus BAC clone RP24-141K3 from 18, complete sequence Length = 140819 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 291 ctgccttcttgtgtcctcagaatt 314 |||||||||| ||||||||||||| Sbjct: 16698 ctgccttcttatgtcctcagaatt 16721
>gb|AC012526.35| Mus musculus strain 129S6/SvEvTac clone rp21-671i11 map 16, complete sequence Length = 186272 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 agggccttcctgtatagccc 359 |||||||||||||||||||| Sbjct: 143105 agggccttcctgtatagccc 143124
>gb|AC012399.40| Mus musculus strain 129S6/SvEvTac clone rp21-184c17 map 16, complete sequence Length = 146040 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 agggccttcctgtatagccc 359 |||||||||||||||||||| Sbjct: 118231 agggccttcctgtatagccc 118212
>emb|AL357872.23| Human DNA sequence from clone RP11-308P9 on chromosome 9 Contains a CpG island, complete sequence Length = 93172 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 391 gattttgctttcagtttgtacatt 414 |||||||||||||||||| ||||| Sbjct: 13546 gattttgctttcagtttgaacatt 13523
>dbj|AK091304.1| Homo sapiens cDNA FLJ33985 fis, clone DFNES2005766, weakly similar to GRAVE'S DISEASE CARRIER PROTEIN Length = 2699 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 aataagcaacagctctgcat 250 |||||||||||||||||||| Sbjct: 728 aataagcaacagctctgcat 709
>gb|AC003060.1| Mus musculus Chromosome 16 BAC Clone 72k21 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 118235 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 agggccttcctgtatagccc 359 |||||||||||||||||||| Sbjct: 100821 agggccttcctgtatagccc 100840
>gb|AC084822.36| Mus musculus strain C57BL/6J clone rp23-47o21 map 16, complete sequence Length = 195335 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 agggccttcctgtatagccc 359 |||||||||||||||||||| Sbjct: 133996 agggccttcctgtatagccc 134015
>dbj|AK035477.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530053J19 product:unclassifiable, full insert sequence Length = 2029 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 agggccttcctgtatagccc 359 |||||||||||||||||||| Sbjct: 165 agggccttcctgtatagccc 146
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 cctcagaattgatggcaggt 324 |||||||||||||||||||| Sbjct: 8064503 cctcagaattgatggcaggt 8064484
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 agggccttcctgtatagccc 359 |||||||||||||||||||| Sbjct: 157481 agggccttcctgtatagccc 157462
>dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0592E11 Length = 153734 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 cctcagaattgatggcaggt 324 |||||||||||||||||||| Sbjct: 88272 cctcagaattgatggcaggt 88253
>emb|CR846636.1| Takifugu rubripes DNA, highly conserved vertebrate non-coding sequence, element ID CNE532 Length = 222 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 tcctcagaattgatggcagg 323 |||||||||||||||||||| Sbjct: 14 tcctcagaattgatggcagg 33
>dbj|AP001006.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-687I9, complete sequence Length = 193999 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 ctgccttcttgtgtcctcag 310 |||||||||||||||||||| Sbjct: 105228 ctgccttcttgtgtcctcag 105209 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,273,553 Number of Sequences: 3902068 Number of extensions: 4273553 Number of successful extensions: 72175 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72082 Number of HSP's gapped (non-prelim): 93 length of query: 574 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 551 effective length of database: 17,143,297,704 effective search space: 9445957034904 effective search space used: 9445957034904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)