ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags32m18 |
|---|---|
| Clone Library Name | barley_pub |
>RIHA_SALTY (Q8ZQY4) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 35.8 bits (81), Expect = 0.12 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = -3 Query: 656 FHGIFLHDPVSFTALVHPEYFTFKKGVVRVETQGICT-GHTLMDHGLKKWNSEN 498 F G LHDP + L+ PE FT + V VETQG T G T++D+ N N Sbjct: 234 FVGAPLHDPCTIAWLLKPEIFTTVERWVGVETQGKYTQGMTVVDYYFLTGNKPN 287
>RIHA_SALTI (Q8Z8H0) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 35.8 bits (81), Expect = 0.12 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = -3 Query: 656 FHGIFLHDPVSFTALVHPEYFTFKKGVVRVETQGICT-GHTLMDHGLKKWNSEN 498 F G LHDP + L+ PE FT + V VETQG T G T++D+ N N Sbjct: 234 FVGAPLHDPCTIAWLLKPEIFTTVERWVGVETQGKYTQGMTVVDYYFLTGNKPN 287
>RIHA_SALPA (Q5PM78) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 35.8 bits (81), Expect = 0.12 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = -3 Query: 656 FHGIFLHDPVSFTALVHPEYFTFKKGVVRVETQGICT-GHTLMDHGLKKWNSEN 498 F G LHDP + L+ PE FT + V VETQG T G T++D+ N N Sbjct: 234 FVGAPLHDPCTIAWLLKPEIFTTVERWVGVETQGKYTQGMTVVDYYFLTGNKPN 287
>RIHC_ECOL6 (P0C0W2) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 35.8 bits (81), Expect = 0.12 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = -3 Query: 674 HAKSDSFH-GIFLHDPVSFTALVHPEYFTFKKGVVRVETQG-ICTGHTLMD 528 H +S S G+ +HD + LV PE FT K V VETQG +G T++D Sbjct: 220 HYRSGSMQSGLRMHDLCAIAWLVRPELFTLKPCFVAVETQGEFTSGTTVVD 270
>RIHA_SHIFL (Q83LY1) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 35.4 bits (80), Expect = 0.16 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = -3 Query: 656 FHGIFLHDPVSFTALVHPEYFTFKKGVVRVETQGICT-GHTLMDHGLKKWNSEN 498 F G LHDP + L+ PE FT + V VETQG T G T++D+ N N Sbjct: 234 FVGAPLHDPCTIAWLLKPELFTTVERWVGVETQGKYTQGMTVVDYYYLTGNKPN 287
>RIHA_ECOLI (P41409) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 35.4 bits (80), Expect = 0.16 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = -3 Query: 656 FHGIFLHDPVSFTALVHPEYFTFKKGVVRVETQGICT-GHTLMDHGLKKWNSEN 498 F G LHDP + L+ PE FT + V VETQG T G T++D+ N N Sbjct: 234 FVGAPLHDPCTIAWLLKPELFTSVERWVGVETQGKYTQGMTVVDYYYLTGNKPN 287
>RIHA_ECOL6 (Q8FJY8) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 35.4 bits (80), Expect = 0.16 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = -3 Query: 656 FHGIFLHDPVSFTALVHPEYFTFKKGVVRVETQGICT-GHTLMDHGLKKWNSEN 498 F G LHDP + L+ PE FT + V VETQG T G T++D+ N N Sbjct: 234 FVGAPLHDPCTIAWLLKPELFTTVERWVGVETQGKYTQGMTVVDYYYLTGNKPN 287
>RIHA_ECO57 (Q8XBL8) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 35.4 bits (80), Expect = 0.16 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = -3 Query: 656 FHGIFLHDPVSFTALVHPEYFTFKKGVVRVETQGICT-GHTLMDHGLKKWNSEN 498 F G LHDP + L+ PE FT + V VETQG T G T++D+ N N Sbjct: 234 FVGAPLHDPCTIAWLLKPELFTTVERWVGVETQGKYTQGMTVVDYYYLTGNKPN 287
>RIHC_SALTY (Q8ZRY7) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 306 Score = 35.0 bits (79), Expect = 0.21 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = -3 Query: 674 HAKSDSFH-GIFLHDPVSFTALVHPEYFTFKKGVVRVETQGICT-GHTLMD 528 H +S S G+ +HD + LV PE FT + V VETQG T G T++D Sbjct: 222 HYRSGSMRTGVRMHDLCAIAWLVRPELFTLQSCFVAVETQGQYTAGTTVVD 272
>RIHC_SALTI (Q8Z9M9) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 306 Score = 35.0 bits (79), Expect = 0.21 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = -3 Query: 674 HAKSDSFH-GIFLHDPVSFTALVHPEYFTFKKGVVRVETQGICT-GHTLMD 528 H +S S G+ +HD + LV PE FT + V VETQG T G T++D Sbjct: 222 HYRSGSMRTGVRMHDLCAIAWLVRPELFTLQSCFVAVETQGEYTAGTTVVD 272
>RIHC_SALCH (Q57TL0) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 306 Score = 35.0 bits (79), Expect = 0.21 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = -3 Query: 674 HAKSDSFH-GIFLHDPVSFTALVHPEYFTFKKGVVRVETQGICT-GHTLMD 528 H +S S G+ +HD + LV PE FT + V VETQG T G T++D Sbjct: 222 HYRSGSMRTGVRMHDLCAIAWLVRPELFTLQSCFVAVETQGEYTAGTTVVD 272
>RIHC_SALPA (Q5PKI2) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 35.0 bits (79), Expect = 0.21 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = -3 Query: 674 HAKSDSFH-GIFLHDPVSFTALVHPEYFTFKKGVVRVETQGICT-GHTLMD 528 H +S S G+ +HD + LV PE FT + V VETQG T G T++D Sbjct: 222 HYRSGSMRTGVRMHDLCAIAWLVRPELFTLQSCFVAVETQGEYTAGTTVVD 272
>RIHC_SHISS (Q3Z5Y0) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 34.7 bits (78), Expect = 0.27 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = -3 Query: 674 HAKSDSFH-GIFLHDPVSFTALVHPEYFTFKKGVVRVETQG-ICTGHTLMD 528 H +S S G+ +HD + LV P+ FT K V VETQG +G T++D Sbjct: 220 HYRSGSMQSGLRMHDLCAIAWLVRPDLFTLKPCFVAVETQGEFTSGTTVVD 270
>RIHC_SHIFL (Q83MH0) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 34.7 bits (78), Expect = 0.27 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = -3 Query: 674 HAKSDSFH-GIFLHDPVSFTALVHPEYFTFKKGVVRVETQG-ICTGHTLMD 528 H +S S G+ +HD + LV P+ FT K V VETQG +G T++D Sbjct: 220 HYRSGSMQSGLRMHDLCAIAWLVRPDLFTLKPCFVAVETQGEFTSGTTVVD 270
>RIHC_ECOLI (P22564) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 34.7 bits (78), Expect = 0.27 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = -3 Query: 674 HAKSDSFH-GIFLHDPVSFTALVHPEYFTFKKGVVRVETQG-ICTGHTLMD 528 H +S S G+ +HD + LV P+ FT K V VETQG +G T++D Sbjct: 220 HYRSGSMQSGLRMHDLCAIAWLVRPDLFTLKPCFVAVETQGEFTSGTTVVD 270
>RIHC_ECO57 (Q8XA41) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 34.7 bits (78), Expect = 0.27 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = -3 Query: 674 HAKSDSFH-GIFLHDPVSFTALVHPEYFTFKKGVVRVETQG-ICTGHTLMD 528 H +S S G+ +HD + LV P+ FT K V VETQG +G T++D Sbjct: 220 HYRSGSMQSGLRMHDLCAIAWLVRPDLFTLKPCFVAVETQGEFTSGTTVVD 270
>RIHA_SHISS (Q3Z4E1) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 34.3 bits (77), Expect = 0.36 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = -3 Query: 656 FHGIFLHDPVSFTALVHPEYFTFKKGVVRVETQG-ICTGHTLMDHGLKKWNSEN 498 F G LHDP + L+ PE FT + V VETQG G T++D+ N N Sbjct: 234 FVGAPLHDPCTIAWLLKPELFTTVERWVGVETQGKYSQGMTVVDYYYLTGNKPN 287
>RIHA_PHOPR (Q6LQG2) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 310 Score = 32.0 bits (71), Expect = 1.8 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = -3 Query: 656 FHGIFLHDPVSFTALVHPEYFTFKKGVVRVETQGICT-GHTLMD 528 F G LHDP + L+ PE F V +ETQG T G T++D Sbjct: 234 FEGAPLHDPCTIAWLLEPELFASINCWVGIETQGSHTLGMTVVD 277
>CATB_MOUSE (P10605) Cathepsin B precursor (EC 3.4.22.1) (Cathepsin B1)| [Contains: Cathepsin B light chain; Cathepsin B heavy chain] Length = 339 Score = 31.6 bits (70), Expect = 2.3 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = -3 Query: 647 IFLHDPVSFTALVHPEYFTFKKGVVRVETQGICTGHTL------MDHGLKKWNSENPWS 489 I+ + PV V ++ T+K GV + E + GH + +++G+ W + N W+ Sbjct: 243 IYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDMMGGHAIRILGWGVENGVPYWLAANSWN 301
>HMCS2_PIG (O02734) Hydroxymethylglutaryl-CoA synthase, mitochondrial| precursor (EC 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 508 Score = 31.6 bits (70), Expect = 2.3 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +2 Query: 185 NLKCSCIYKCLESMLSQCCLSCAEFTPIGCFALGS 289 N+ S +Y CL S+LSQC + IG F+ GS Sbjct: 380 NMYTSSLYGCLASLLSQCSAQDLAGSRIGAFSYGS 414
>RIHA_SALCH (Q57RR6) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 31.2 bits (69), Expect = 3.0 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = -3 Query: 656 FHGIFLHDPVSFTALVHPEYFTFKKGVVRVETQGICT-GHTLMDHGLKKWNSEN 498 F G LH P + L+ PE FT + V VET+G T G T++D+ N N Sbjct: 234 FVGAPLHAPCTIAWLLKPEIFTTVERWVGVETKGKYTQGMTVVDYYFLTGNKPN 287
>CATB_RAT (P00787) Cathepsin B precursor (EC 3.4.22.1) (Cathepsin B1) (RSG-2)| [Contains: Cathepsin B light chain; Cathepsin B heavy chain] Length = 339 Score = 31.2 bits (69), Expect = 3.0 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Frame = -3 Query: 647 IFLHDPVSFTALVHPEYFTFKKGVVRVETQGICTGHTL------MDHGLKKWNSENPWS 489 I+ + PV V ++ T+K GV + E + GH + +++G+ W N W+ Sbjct: 243 IYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWN 301
>DNA2_SCHPO (Q9URU2) DNA replication ATP-dependent helicase dna2 (EC 3.6.1.-)| Length = 1398 Score = 30.4 bits (67), Expect = 5.2 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -2 Query: 621 YSLSSSRVLHIQEGCCESRDPGHLHRPYFDGSWIEKVEFRKSMV 490 +SL+ ++HIQ+ C E R LH P+ + +F+K+ V Sbjct: 817 WSLAKGHIVHIQDSCIEVRTRHRLHIPWLK---MPNFDFKKNQV 857
>LAMA1_HUMAN (P25391) Laminin alpha-1 chain precursor (Laminin A chain)| Length = 3075 Score = 30.4 bits (67), Expect = 5.2 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Frame = -2 Query: 471 SCMDSQCAKGPCICKEAADGTL--RIEPEVYSESLSRSVMVQVNSHGQSIFFCF 316 S D C GPC+CKE +G R +P Y+ + + N G S FCF Sbjct: 461 SASDEPCT-GPCVCKENVEGKACDRCKPGFYN-------LKEKNPRGCSECFCF 506 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,690,602 Number of Sequences: 219361 Number of extensions: 2099076 Number of successful extensions: 4796 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4554 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4793 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
