| Clone Name | rbags32m18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY588275.1| Zea mays putative inosine-uridine preferring nucleoside hydrolase mRNA, complete cds Length = 1458 Score = 270 bits (136), Expect = 6e-69 Identities = 241/276 (87%) Strand = Plus / Minus Query: 404 ctcagggtgccatcagcagcttctttacatatgcaaggacctttggcacattgactgtcc 463 |||| |||||||| ||||||||||||| | | | |||||||||||||| || |||| Sbjct: 1147 ctcatggtgccatgagcagcttctttataaagctgatgacctttggcacatcaaccgtcc 1088 Query: 464 atgcaactgaaattggtgcataacccgaccatggattttctgaattccactttttcaatc 523 ||||||||||||| ||| ||| || |||||||| || |||||||||||||||||||||| Sbjct: 1087 atgcaactgaaatcggtttataccctgaccatgggttctctgaattccactttttcaatc 1028 Query: 524 catgatccatcaaagtatggccggtgcaaatgccctgggtctcgactctcacaacaccct 583 | |||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||| Sbjct: 1027 cctgatccatcaaagtgtggccagtgcaaatgccctgggtctctactctcaccacaccct 968 Query: 584 tcttgaatgtgaagtactcgggatgaactaaggctgtaaagctcacaggatcatgtagga 643 ||||||||||||||||||| ||||||| || ||| || ||||||||||||||||| |||| Sbjct: 967 tcttgaatgtgaagtactctggatgaagtacggcagtgaagctcacaggatcatgaagga 908 Query: 644 aaatcccatgaaagctgtcagacttcgcatgccaat 679 |||| |||||||| | |||||||| |||||||||| Sbjct: 907 aaattccatgaaaaccatcagacttggcatgccaat 872
>ref|XM_483754.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1516 Score = 218 bits (110), Expect = 2e-53 Identities = 188/214 (87%) Strand = Plus / Minus Query: 445 tttggcacattgactgtccatgcaactgaaattggtgcataacccgaccatggattttct 504 |||||||||| ||||||||||||||||| ||||| || || ||||||||||| ||| Sbjct: 1071 tttggcacatcaactgtccatgcaactgagattggcttgtagccagaccatggattctct 1012 Query: 505 gaattccactttttcaatccatgatccatcaaagtatggccggtgcaaatgccctgggtc 564 |||||||||||||||||||| || ||||| ||||| || || ||||||||||||||||| Sbjct: 1011 gaattccactttttcaatccttggtccattaaagtgtgaccagtgcaaatgccctgggtt 952 Query: 565 tcgactctcacaacacccttcttgaatgtgaagtactcgggatgaactaaggctgtaaag 624 || ||||||||||||||||||||||| ||||||||||| || ||||||| ||| || ||| Sbjct: 951 tctactctcacaacacccttcttgaacgtgaagtactcagggtgaactagggcagtgaag 892 Query: 625 ctcacaggatcatgtaggaaaatcccatgaaagc 658 |||||||||||||| |||||||| |||||||||| Sbjct: 891 ctcacaggatcatggaggaaaattccatgaaagc 858
>dbj|AK065324.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P23, full insert sequence Length = 1517 Score = 218 bits (110), Expect = 2e-53 Identities = 188/214 (87%) Strand = Plus / Minus Query: 445 tttggcacattgactgtccatgcaactgaaattggtgcataacccgaccatggattttct 504 |||||||||| ||||||||||||||||| ||||| || || ||||||||||| ||| Sbjct: 1072 tttggcacatcaactgtccatgcaactgagattggcttgtagccagaccatggattctct 1013 Query: 505 gaattccactttttcaatccatgatccatcaaagtatggccggtgcaaatgccctgggtc 564 |||||||||||||||||||| || ||||| ||||| || || ||||||||||||||||| Sbjct: 1012 gaattccactttttcaatccttggtccattaaagtgtgaccagtgcaaatgccctgggtt 953 Query: 565 tcgactctcacaacacccttcttgaatgtgaagtactcgggatgaactaaggctgtaaag 624 || ||||||||||||||||||||||| ||||||||||| || ||||||| ||| || ||| Sbjct: 952 tctactctcacaacacccttcttgaacgtgaagtactcagggtgaactagggcagtgaag 893 Query: 625 ctcacaggatcatgtaggaaaatcccatgaaagc 658 |||||||||||||| |||||||| |||||||||| Sbjct: 892 ctcacaggatcatggaggaaaattccatgaaagc 859
>gb|AY109712.1| Zea mays CL31621_2 mRNA sequence Length = 877 Score = 184 bits (93), Expect = 3e-43 Identities = 144/161 (89%) Strand = Plus / Plus Query: 519 caatccatgatccatcaaagtatggccggtgcaaatgccctgggtctcgactctcacaac 578 |||||| |||||||||||||| ||||| |||||||||||||||||||| || ||||| || Sbjct: 644 caatccctgatccatcaaagtgtggccagtgcaaatgccctgggtctctaccctcaccac 703 Query: 579 acccttcttgaatgtgaagtactcgggatgaactaaggctgtaaagctcacaggatcatg 638 |||||||||||||||||||||||| ||||||| || ||| || ||||||||||||||||| Sbjct: 704 acccttcttgaatgtgaagtactctggatgaagtacggcagtgaagctcacaggatcatg 763 Query: 639 taggaaaatcccatgaaagctgtcagacttcgcatgccaat 679 |||||||| |||||||| | |||||||| |||||||||| Sbjct: 764 aaggaaaattccatgaaaaccatcagacttggcatgccaat 804 Score = 60.0 bits (30), Expect = 1e-05 Identities = 90/110 (81%) Strand = Plus / Plus Query: 404 ctcagggtgccatcagcagcttctttacatatgcaaggacctttggcacattgactgtcc 463 |||| |||||||| ||||||||||||| | | | |||||||| ||||| || |||| Sbjct: 313 ctcatggtgccataagcagcttctttataaagctgatgacctttgccacatcaaccgtcc 372 Query: 464 atgcaactgaaattggtgcataacccgaccatggattttctgaattccac 513 ||||||||||||| ||| ||| || |||||||| || |||||||||||| Sbjct: 373 atgcaactgaaatcggtttataccctgaccatgggttctctgaattccac 422
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 151 bits (76), Expect = 4e-33 Identities = 121/136 (88%) Strand = Plus / Plus Query: 512 actttttcaatccatgatccatcaaagtatggccggtgcaaatgccctgggtctcgactc 571 ||||||||||||| || ||||| ||||| || || ||||||||||||||||| || |||| Sbjct: 27916254 actttttcaatccttggtccattaaagtgtgaccagtgcaaatgccctgggtttctactc 27916313 Query: 572 tcacaacacccttcttgaatgtgaagtactcgggatgaactaaggctgtaaagctcacag 631 ||||||||||||||||||| ||||||||||| || ||||||| ||| || |||||||||| Sbjct: 27916314 tcacaacacccttcttgaacgtgaagtactcagggtgaactagggcagtgaagctcacag 27916373 Query: 632 gatcatgtaggaaaat 647 ||||||| |||||||| Sbjct: 27916374 gatcatggaggaaaat 27916389 Score = 58.0 bits (29), Expect = 4e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 445 tttggcacattgactgtccatgcaactgaaattggtgcataacccgaccatggattttct 504 |||||||||| ||||||||||||||||| ||||| || || ||||||||||| ||| Sbjct: 27916050 tttggcacatcaactgtccatgcaactgagattggcttgtagccagaccatggattctct 27916109 Query: 505 gaattccac 513 ||||||||| Sbjct: 27916110 gaattccac 27916118
>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1150_A11 Length = 142010 Score = 151 bits (76), Expect = 4e-33 Identities = 121/136 (88%) Strand = Plus / Plus Query: 512 actttttcaatccatgatccatcaaagtatggccggtgcaaatgccctgggtctcgactc 571 ||||||||||||| || ||||| ||||| || || ||||||||||||||||| || |||| Sbjct: 124332 actttttcaatccttggtccattaaagtgtgaccagtgcaaatgccctgggtttctactc 124391 Query: 572 tcacaacacccttcttgaatgtgaagtactcgggatgaactaaggctgtaaagctcacag 631 ||||||||||||||||||| ||||||||||| || ||||||| ||| || |||||||||| Sbjct: 124392 tcacaacacccttcttgaacgtgaagtactcagggtgaactagggcagtgaagctcacag 124451 Query: 632 gatcatgtaggaaaat 647 ||||||| |||||||| Sbjct: 124452 gatcatggaggaaaat 124467 Score = 58.0 bits (29), Expect = 4e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 445 tttggcacattgactgtccatgcaactgaaattggtgcataacccgaccatggattttct 504 |||||||||| ||||||||||||||||| ||||| || || ||||||||||| ||| Sbjct: 124128 tttggcacatcaactgtccatgcaactgagattggcttgtagccagaccatggattctct 124187 Query: 505 gaattccac 513 ||||||||| Sbjct: 124188 gaattccac 124196
>dbj|AK061415.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D09, full insert sequence Length = 1329 Score = 91.7 bits (46), Expect = 3e-15 Identities = 117/138 (84%), Gaps = 2/138 (1%) Strand = Plus / Minus Query: 502 tctgaattccactttttcaatcc-atgatccatcaaagtatggccggtgcaaatgccctg 560 |||||||||||||| |||| ||| ||| ||||| ||||||| || |||| |||||||| Sbjct: 1002 tctgaattccacttcttcagtcccatg-tccatggaagtatgccccttgcagatgccctg 944 Query: 561 ggtctcgactctcacaacacccttcttgaatgtgaagtactcgggatgaactaaggctgt 620 |||||| || ||||| || ||||||||||| |||||||||||||| ||||||| || || Sbjct: 943 ggtctcaaccctcaccacgcccttcttgaacgtgaagtactcggggtgaactagcgcggt 884 Query: 621 aaagctcacaggatcatg 638 || |||||||||||||| Sbjct: 883 gaaactcacaggatcatg 866
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Plus Query: 548 tgcaaatgccctgggtctcgactctcacaacacccttcttgaatgtgaagtactcgggat 607 |||| |||||||||||||| || ||||| || ||||||||||| |||||||||||||| | Sbjct: 22376643 tgcagatgccctgggtctcaaccctcaccacgcccttcttgaacgtgaagtactcggggt 22376702 Query: 608 gaactaaggctgtaaagctcacaggatcatg 638 |||||| || || || |||||||||||||| Sbjct: 22376703 gaactagcgcggtgaaactcacaggatcatg 22376733
>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1155_H10 Length = 140475 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Plus Query: 548 tgcaaatgccctgggtctcgactctcacaacacccttcttgaatgtgaagtactcgggat 607 |||| |||||||||||||| || ||||| || ||||||||||| |||||||||||||| | Sbjct: 138651 tgcagatgccctgggtctcaaccctcaccacgcccttcttgaacgtgaagtactcggggt 138710 Query: 608 gaactaaggctgtaaagctcacaggatcatg 638 |||||| || || || |||||||||||||| Sbjct: 138711 gaactagcgcggtgaaactcacaggatcatg 138741
>dbj|AP005546.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1003_C09 Length = 124746 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Plus Query: 548 tgcaaatgccctgggtctcgactctcacaacacccttcttgaatgtgaagtactcgggat 607 |||| |||||||||||||| || ||||| || ||||||||||| |||||||||||||| | Sbjct: 13132 tgcagatgccctgggtctcaaccctcaccacgcccttcttgaacgtgaagtactcggggt 13191 Query: 608 gaactaaggctgtaaagctcacaggatcatg 638 |||||| || || || |||||||||||||| Sbjct: 13192 gaactagcgcggtgaaactcacaggatcatg 13222
>emb|CR759947.5| Gorilla DNA sequence from clone CH255-315F17, complete sequence Length = 97153 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 494 atggattttctgaattccactttttca 520 ||||| ||||||||||||||||||||| Sbjct: 39828 atggactttctgaattccactttttca 39802
>gb|AC008746.10| Homo sapiens chromosome 19 clone CTD-2587H19, complete sequence Length = 200070 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 494 atggattttctgaattccactttttca 520 ||||| ||||||||||||||||||||| Sbjct: 144209 atggactttctgaattccactttttca 144183
>emb|X07277.1|GGNCAD Chicken mRNA for N-cadherin Length = 3203 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 316 aaaacagaaaaatatactttgg 337 |||||||||||||||||||||| Sbjct: 243 aaaacagaaaaatatactttgg 264
>gb|AC012365.6| Homo sapiens BAC clone RP11-459C22 from 2, complete sequence Length = 187848 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 193 atgtagttgtatatataaatgt 214 |||||||||||||||||||||| Sbjct: 117162 atgtagttgtatatataaatgt 117183
>gb|AC175466.2| Gallus gallus BAC clone CH261-8A20 from chromosome ul, complete sequence Length = 233533 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 316 aaaacagaaaaatatactttgg 337 |||||||||||||||||||||| Sbjct: 175808 aaaacagaaaaatatactttgg 175787
>ref|NM_001001615.1| Gallus gallus cadherin 2, type 1, N-cadherin (neuronal) (CDH2), mRNA Length = 3203 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 316 aaaacagaaaaatatactttgg 337 |||||||||||||||||||||| Sbjct: 243 aaaacagaaaaatatactttgg 264
>ref|XM_713002.1| Candida albicans SC5314 putative ABC family transporter (CaO19_5759), mRNA Length = 4488 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 535 aaagtatggccggtgcaaatgccctgggt 563 ||||||| ||||||||||||||| ||||| Sbjct: 1913 aaagtattgccggtgcaaatgccatgggt 1941
>ref|XM_712936.1| Candida albicans SC5314 putative ABC family transporter (CaO19_13182), mRNA Length = 4488 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 535 aaagtatggccggtgcaaatgccctgggt 563 ||||||| ||||||||||||||| ||||| Sbjct: 1913 aaagtattgccggtgcaaatgccatgggt 1941
>gb|AC133330.3| Homo sapiens chromosome 8 clone RP11-134N2, complete sequence Length = 164916 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 atcatgtaggaaaatcccatgaaag 657 ||||||||||| ||||||||||||| Sbjct: 119035 atcatgtaggagaatcccatgaaag 119011
>gb|AC172242.3| Gallus gallus BAC clone CH261-162M6 from chromosome ul, complete sequence Length = 252782 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 498 attttctgaattccacttttt 518 ||||||||||||||||||||| Sbjct: 191830 attttctgaattccacttttt 191810
>gb|AC123946.4| Mus musculus BAC clone RP23-97L17 from chromosome 12, complete sequence Length = 193610 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 ttttttccaaatttgaaatgt 196 ||||||||||||||||||||| Sbjct: 149918 ttttttccaaatttgaaatgt 149898
>gb|AC091660.2| Bos taurus clone RP42-354B6, complete sequence Length = 173068 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 tttttccaaatttgaaatgta 197 ||||||||||||||||||||| Sbjct: 136262 tttttccaaatttgaaatgta 136242
>emb|AL513320.30| Human DNA sequence from clone RP11-46F15 on chromosome 1 Contains the 5' end of the EGFL3 gene for EGF-like-domain multiple 3, a novel gene, the gene for a novel protein (FLJ39108, FLJ21756 and FLJ21811), the 3' end of the WDR8 gene for WD repeat domain 8 and five CpG islands, complete sequence Length = 130141 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 catggattttctgaattccactttt 517 |||||||| |||||||||||||||| Sbjct: 88235 catggattctctgaattccactttt 88211
>emb|AL158064.16| Human DNA sequence from clone RP11-470M1 on chromosome 13, complete sequence Length = 160587 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 619 gtaaagctcacaggatcatgt 639 ||||||||||||||||||||| Sbjct: 156332 gtaaagctcacaggatcatgt 156352
>gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome 12, complete sequence Length = 201524 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 ttttttccaaatttgaaatgt 196 ||||||||||||||||||||| Sbjct: 45112 ttttttccaaatttgaaatgt 45092
>gb|AC090505.10| Homo sapiens 3 BAC RP11-152D21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 86560 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 ttttccaaatttgaaatgtag 198 ||||||||||||||||||||| Sbjct: 80762 ttttccaaatttgaaatgtag 80742
>gb|AC021305.9| Homo sapiens chromosome 8, clone RP11-140B16, complete sequence Length = 164916 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 atcatgtaggaaaatcccatgaaag 657 ||||||||||| ||||||||||||| Sbjct: 119035 atcatgtaggagaatcccatgaaag 119011
>gb|AC079762.7| Homo sapiens BAC clone RP11-150F12 from 2, complete sequence Length = 163408 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 cttgcttctaaaaacagaaaa 326 ||||||||||||||||||||| Sbjct: 137100 cttgcttctaaaaacagaaaa 137120
>gb|AC079248.5| Homo sapiens BAC clone RP11-24J11 from 2, complete sequence Length = 128535 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 102 tcttttctcatttgtctaaacatgt 126 ||||||||| ||||||||||||||| Sbjct: 25554 tcttttctcctttgtctaaacatgt 25530
>gb|AF267168.3| Homo sapiens chromosome 8 clone RP11-134N2, complete sequence Length = 180957 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 atcatgtaggaaaatcccatgaaag 657 ||||||||||| ||||||||||||| Sbjct: 135056 atcatgtaggagaatcccatgaaag 135032
>gb|AF254981.4| Homo sapiens chromosome 8 clone RP11-429D14 map 8q24.2, complete sequence Length = 202142 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 atcatgtaggaaaatcccatgaaag 657 ||||||||||| ||||||||||||| Sbjct: 73220 atcatgtaggagaatcccatgaaag 73196
>gb|AY106135.1| Zea mays PCO154542 mRNA sequence Length = 944 Score = 42.1 bits (21), Expect = 2.3 Identities = 51/61 (83%) Strand = Plus / Minus Query: 536 aagtatggccggtgcaaatgccctgggtctcgactctcacaacacccttcttgaatgtga 595 ||||||| ||| ||| |||||||| ||||| || ||||| || ||||||||||| |||| Sbjct: 650 aagtatgcccgacgcagatgccctgcgtctccaccctcaccacgcccttcttgaacgtga 591 Query: 596 a 596 | Sbjct: 590 a 590
>emb|AL808017.4| Mouse DNA sequence from clone RP23-145G21 on chromosome X, complete sequence Length = 183291 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 gctgtcacaatgctgtctgtc 246 ||||||||||||||||||||| Sbjct: 145223 gctgtcacaatgctgtctgtc 145243
>gb|AC137117.15| Mus musculus chromosome 15, clone RP23-242E20, complete sequence Length = 202147 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 aaaacagaaaaatatacttt 335 |||||||||||||||||||| Sbjct: 80023 aaaacagaaaaatatacttt 80004
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 tgcagaatttacccccattg 269 |||||||||||||||||||| Sbjct: 449776 tgcagaatttacccccattg 449757
>ref|XM_640143.1| Dictyostelium discoideum hypothetical protein (DDB0216999), partial mRNA Length = 7347 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 taaatgtttggaatcaatgc 227 |||||||||||||||||||| Sbjct: 6980 taaatgtttggaatcaatgc 6999
>gb|AC095018.2| Drosophila melanogaster clone BACR24L18, complete sequence Length = 163116 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 aaaaacagaaaaatatactt 334 |||||||||||||||||||| Sbjct: 12756 aaaaacagaaaaatatactt 12775
>ref|XM_426559.1| PREDICTED: Gallus gallus similar to transmembrane protein with EGF-like and two follistatin-like domains 2 (LOC429002), mRNA Length = 4818 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 acaatgctgtctgtcatgtgcaga 255 |||||||| ||||||||||||||| Sbjct: 3904 acaatgctatctgtcatgtgcaga 3927
>gb|AC183274.3| Pan troglodytes BAC clone CH251-156F5 from chromosome 7, complete sequence Length = 163934 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 tttgaaatgtagttgtatat 206 |||||||||||||||||||| Sbjct: 157798 tttgaaatgtagttgtatat 157779
>gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence Length = 257109 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 taaatgtttggaatcaatgc 227 |||||||||||||||||||| Sbjct: 38997 taaatgtttggaatcaatgc 39016
>gb|AC134906.3| Mus musculus BAC clone RP23-361K7 from chromosome 19, complete sequence Length = 192484 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 tctgtcatgtgcagaattta 260 |||||||||||||||||||| Sbjct: 24277 tctgtcatgtgcagaattta 24258
>gb|AC121940.3| Mus musculus BAC clone RP24-209B21 from chromosome 19, complete sequence Length = 203390 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 tctgtcatgtgcagaattta 260 |||||||||||||||||||| Sbjct: 113091 tctgtcatgtgcagaattta 113072
>gb|AY194049.1| HIV-1 isolate UGANC1 from Uganda nonfunctional tat protein gene, partial sequence Length = 261 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 542 ggccggtgcaaatgccctgggtct 565 ||||||||| |||||||||||||| Sbjct: 250 ggccggtgctaatgccctgggtct 227
>gb|AY194048.1| HIV-1 isolate UG3 from Uganda nonfunctional tat protein gene, partial sequence Length = 261 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 542 ggccggtgcaaatgccctgggtct 565 ||||||||| |||||||||||||| Sbjct: 250 ggccggtgctaatgccctgggtct 227
>gb|AY194034.1| HIV-1 isolate UGMED2 from Uganda tat protein (tat) gene, partial cds Length = 258 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 542 ggccggtgcaaatgccctgggtct 565 ||||||||| |||||||||||||| Sbjct: 250 ggccggtgctaatgccctgggtct 227
>gb|AC142351.1| Pan troglodytes BAC clone RP43-21J15 from 7, complete sequence Length = 159635 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 tgcttctaaaaacagaaaaatata 331 |||||||||||||||||| ||||| Sbjct: 14073 tgcttctaaaaacagaaatatata 14096
>emb|AL359257.9| Human DNA sequence from clone RP11-226E21 on chromosome 13 Contains part of a novel gene (KIAA0916)amd two novel genes, complete sequence Length = 97477 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 ttgtatatataaatgtttgg 218 |||||||||||||||||||| Sbjct: 75204 ttgtatatataaatgtttgg 75185
>emb|AL356583.28| Human DNA sequence from clone RP11-690C23 on chromosome 1 Contains the 5' end of the SMYD3 gene for SET and MYND domain containing 3, an ubiquitin specific protease 6 (Tre-2 oncogene) (USP6) pseudogene, a novel gene, a pseudogene similar to part of tumor necrosis factor receptor superfamily member 13B (TNFRSF13B), a pseudogene similar to part of carboxypeptidase D (CPD), the TFB2M gene for mitochondrial transcription factor B2, the 5' end of the gene for a novel protein (FLJ32001, DKFZp451A152, DKFZp451B077, FLJ00215) and two CpG islands, complete sequence Length = 207486 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ttttccaaatttgaaatgta 197 |||||||||||||||||||| Sbjct: 178110 ttttccaaatttgaaatgta 178129
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 tatgcttgcttctaaaaaca 321 |||||||||||||||||||| Sbjct: 1777862 tatgcttgcttctaaaaaca 1777843
>emb|BX510945.13| Zebrafish DNA sequence from clone CH211-59D17 in linkage group 21, complete sequence Length = 202152 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 tatatataaatgtttggaat 221 |||||||||||||||||||| Sbjct: 84106 tatatataaatgtttggaat 84125
>gb|AC036111.7| Homo sapiens chromosome 2, clone RP11-738O11, complete sequence Length = 184570 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 aatttgaaatgtagttgtat 204 |||||||||||||||||||| Sbjct: 150391 aatttgaaatgtagttgtat 150372
>gb|AC010009.7| Drosophila melanogaster 3L BAC RP98-23D16 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 195757 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 512 actttttcaatccatgatccatca 535 |||||||| ||||||||||||||| Sbjct: 178843 actttttctatccatgatccatca 178866
>gb|AC103949.6| Homo sapiens chromosome 18, clone RP11-671P2, complete sequence Length = 177301 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 tgcttctaaaaacagaaaaatata 331 |||||||||||||||||| ||||| Sbjct: 27244 tgcttctaaaaacagaaatatata 27267
>emb|BX510315.6| Zebrafish DNA sequence from clone CH211-59I18 in linkage group 24, complete sequence Length = 202562 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 tcacaatgctgtctgtcatg 249 |||||||||||||||||||| Sbjct: 121065 tcacaatgctgtctgtcatg 121084
>gb|AC010011.5| Drosophila melanogaster 3L BAC RP98-17D14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167026 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 512 actttttcaatccatgatccatca 535 |||||||| ||||||||||||||| Sbjct: 147339 actttttctatccatgatccatca 147316
>gb|AC026839.7| Homo sapiens chromosome 5, clone RP11-186B13, complete sequence Length = 156721 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 tgcttctaaaaacagaaaaatata 331 |||||||||||||||||| ||||| Sbjct: 115300 tgcttctaaaaacagaaatatata 115277
>gb|AC011586.9| Homo sapiens, clone RP11-13N12, complete sequence Length = 167475 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 cttctaaaaacagaaaaata 329 |||||||||||||||||||| Sbjct: 138966 cttctaaaaacagaaaaata 138947
>gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3, complete sequence Length = 174133 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 ttctaaaaacagaaaaatat 330 |||||||||||||||||||| Sbjct: 35042 ttctaaaaacagaaaaatat 35061
>gb|AC148298.3| Pan troglodytes BAC clone CH251-136E8 from chromosome 7, complete sequence Length = 168496 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tttgaaatgtagttgtatat 206 |||||||||||||||||||| Sbjct: 109278 tttgaaatgtagttgtatat 109297
>gb|AC048341.22| Homo sapiens 12 BAC RP11-631N16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 67400 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 aaaacagaaaaatatacttt 335 |||||||||||||||||||| Sbjct: 7910 aaaacagaaaaatatacttt 7891
>gb|AC091636.1|AC091636 Drosophila melanogaster, chromosome 3R, region 89E-89E, BAC clone BACR03M20, complete sequence Length = 175335 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 aaaaacagaaaaatatactt 334 |||||||||||||||||||| Sbjct: 49729 aaaaacagaaaaatatactt 49710
>gb|AC007771.7|AC007771 Drosophila melanogaster, chromosome 3R, region 92E-92F, BAC clone BACR26M03, complete sequence Length = 197071 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tgtatatataaatgtttgga 219 |||||||||||||||||||| Sbjct: 107803 tgtatatataaatgtttgga 107822
>gb|AC009501.4| Homo sapiens BAC clone RP11-511I11 from 2, complete sequence Length = 157173 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 ttcctcctatgcttgcttctaaaa 318 |||||||||||||| ||||||||| Sbjct: 151564 ttcctcctatgctttcttctaaaa 151587
>gb|AC007684.3| Homo sapiens BAC clone RP11-449G16 from 2, complete sequence Length = 196848 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 aactgaaattggtgcataac 487 |||||||||||||||||||| Sbjct: 135335 aactgaaattggtgcataac 135354
>emb|AL929240.18| Mouse DNA sequence from clone RP23-245A10 on chromosome 2, complete sequence Length = 180092 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 ctgaattccactttttcaat 522 |||||||||||||||||||| Sbjct: 175632 ctgaattccactttttcaat 175651
>gb|BC094158.1| Xenopus laevis cDNA clone MGC:115288 IMAGE:6861103, complete cds Length = 4580 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ttctcagggtgccatcagca 421 |||||||||||||||||||| Sbjct: 2650 ttctcagggtgccatcagca 2669
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 ccgaccatggattttctgaa 507 |||||||||||||||||||| Sbjct: 2055750 ccgaccatggattttctgaa 2055769
>gb|AC022077.20| Homo sapiens 3 BAC RP11-34I16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158176 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 ttacatatgcaaggaccttt 447 |||||||||||||||||||| Sbjct: 97439 ttacatatgcaaggaccttt 97420
>emb|BX510368.7| Zebrafish DNA sequence from clone DKEY-190P19 in linkage group 20, complete sequence Length = 84687 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 aaatgtagttgtatatataaatgt 214 |||||||||||||||| ||||||| Sbjct: 79248 aaatgtagttgtatatttaaatgt 79225
>emb|AL954739.9| Zebrafish DNA sequence from clone CH211-192K9 in linkage group 20, complete sequence Length = 154604 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 aaatgtagttgtatatataaatgt 214 |||||||||||||||| ||||||| Sbjct: 66333 aaatgtagttgtatatttaaatgt 66356
>emb|AL772314.9| Zebrafish DNA sequence from clone DKEY-89B17 in linkage group 19, complete sequence Length = 185640 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 ggaagttttttccaaatttg 190 |||||||||||||||||||| Sbjct: 98670 ggaagttttttccaaatttg 98689
>gb|AE003731.3| Drosophila melanogaster chromosome 3R, section 69 of 118 of the complete sequence Length = 230001 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tgtatatataaatgtttgga 219 |||||||||||||||||||| Sbjct: 174018 tgtatatataaatgtttgga 174037
>gb|AE003715.4| Drosophila melanogaster chromosome 3R, section 53 of 118 of the complete sequence Length = 228547 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 aaaaacagaaaaatatactt 334 |||||||||||||||||||| Sbjct: 144938 aaaaacagaaaaatatactt 144919
>gb|AE003596.5| Drosophila melanogaster chromosome 3L, section 77 of 83 of the complete sequence Length = 249021 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 512 actttttcaatccatgatccatca 535 |||||||| ||||||||||||||| Sbjct: 209706 actttttctatccatgatccatca 209683
>gb|AC148246.3| Saimiri boliviensis boliviensis clone CH254-471K13, complete sequence Length = 177755 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 tgcttctaaaaacagaaaaatata 331 ||||||||||||| |||||||||| Sbjct: 95895 tgcttctaaaaacggaaaaatata 95918
>emb|AL929382.9| Mouse DNA sequence from clone RP23-136C24 on chromosome X, complete sequence Length = 201060 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ttgcttctaaaaacagaaaa 326 |||||||||||||||||||| Sbjct: 35139 ttgcttctaaaaacagaaaa 35158
>gb|U31961.1|DMU31961 Drosophila melanogaster bithorax complex (BX-C), complete sequence Length = 338234 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 aaaaacagaaaaatatactt 334 |||||||||||||||||||| Sbjct: 38780 aaaaacagaaaaatatactt 38799
>gb|L07835.1|DROABDB Drosophila melanogaster (clone DS07696) Abd-B gene Length = 80423 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 aaaaacagaaaaatatactt 334 |||||||||||||||||||| Sbjct: 38780 aaaaacagaaaaatatactt 38799 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,037,344 Number of Sequences: 3902068 Number of extensions: 7037344 Number of successful extensions: 146278 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 145995 Number of HSP's gapped (non-prelim): 278 length of query: 679 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 656 effective length of database: 17,143,297,704 effective search space: 11246003293824 effective search space used: 11246003293824 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)