ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32m16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRPG_HAEIN (P71381) Anthranilate synthase component II (EC 4.1.3... 31 2.7
2SEMG2_HYLLA (Q5U7N1) Semenogelin-2 precursor (Semenogelin II) (S... 30 6.1
3NEUV_BUFJA (P08163) Vasotocin-neurophysin VT precursor (VT) [Con... 30 6.1
4SEMG2_MACFA (Q5U7N0) Semenogelin-2 precursor (Semenogelin II) (S... 30 8.0
5SEMG2_COLGU (Q5U7M8) Semenogelin-2 precursor (Semenogelin II) (S... 30 8.0
6SEMG2_MACMU (Q95196) Semenogelin-2 precursor (Semenogelin II) (S... 30 8.0

>TRPG_HAEIN (P71381) Anthranilate synthase component II (EC 4.1.3.27)|
           (Glutamine amido-transferase)
          Length = 193

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 433 NDCTGSSLIQITRNVTNTNLDM---PGTGSVATIHLRLVAMYKDTVELVGI 576
           NDC    L++   N  +T L +   PGT S A I L L+   K+ V ++G+
Sbjct: 33  NDCDLEKLVETALNTPDTILALSPGPGTPSEAGILLPLIERLKNQVPIIGV 83



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>SEMG2_HYLLA (Q5U7N1) Semenogelin-2 precursor (Semenogelin II) (SGII)|
          Length = 582

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 270 PSSPEEHGDEPTKQSVRSSSSPTQERYIGTSSIS*GRNQNSVS 142
           PS  +EHG +  K S +SSS+  +    G   I  G ++ S+S
Sbjct: 393 PSQAQEHGHKENKMSYQSSSTEERRLNCGEKGIHKGVSKGSIS 435



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>NEUV_BUFJA (P08163) Vasotocin-neurophysin VT precursor (VT) [Contains:|
           Hydrin-2 (Hydrin II); Vasotocin; Neurophysin VT;
           Glycoprotein] (Fragment)
          Length = 159

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 20/52 (38%), Positives = 22/52 (42%)
 Frame = +2

Query: 185 PIYLSWVGELELLTDCLVGSSPCSSGLEGVRKGMPPEKKSVLCAYQTCFVDS 340
           P  L  V E  L + C  G  PCSSG      G       V C+  TC VDS
Sbjct: 68  PETLRCVEETYLPSPCEAGGKPCSSGGRCAAPG-------VCCSDDTCVVDS 112



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>SEMG2_MACFA (Q5U7N0) Semenogelin-2 precursor (Semenogelin II) (SGII)|
          Length = 582

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 270 PSSPEEHGDEPTKQSVRSSSSPTQERYIGTSSIS*GRNQNSVS 142
           PS  +EHG +  K S +SSS+  ++   G   I  G ++ S+S
Sbjct: 393 PSQDQEHGHKENKISYQSSSAEERQLNSGEKGIQKGVSKGSIS 435



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>SEMG2_COLGU (Q5U7M8) Semenogelin-2 precursor (Semenogelin II) (SGII)|
          Length = 582

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 270 PSSPEEHGDEPTKQSVRSSSSPTQERYIGTSSIS*GRNQNSVS 142
           PS  +EHG +  K S +SSS+  ++   G  SI    +Q+S+S
Sbjct: 453 PSQDQEHGHKENKISYQSSSTEERQLNYGGKSIQKDVSQSSLS 495



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>SEMG2_MACMU (Q95196) Semenogelin-2 precursor (Semenogelin II) (SGII)|
          Length = 706

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 270 PSSPEEHGDEPTKQSVRSSSSPTQERYIGTSSIS*GRNQNSVS 142
           PS  +EHG +  K S +SSS+  ++   G   I  G ++ S+S
Sbjct: 517 PSQDQEHGHKENKISYQSSSAEERQLNSGEKGIQKGVSKGSIS 559


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,742,418
Number of Sequences: 219361
Number of extensions: 1989429
Number of successful extensions: 5272
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5269
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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