>RS6B_ARATH (P51430) 40S ribosomal protein S6-2|
          Length = 249

 Score =  138 bits (348), Expect = 9e-33
 Identities = 70/98 (71%), Positives = 78/98 (79%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXX 365
           ++KLFNLGK+DDVR YVNTYRRTF NKKGKKVSKAPKIQRLVTPLTLQ            
Sbjct: 143 IRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKR 202

Query: 364 XXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 251
                S+AA+YQKLLA RLKEQRDRRSES+AK+RS+LS
Sbjct: 203 IAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLS 240

>RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6|
          Length = 251

 Score =  134 bits (337), Expect = 2e-31
 Identities = 70/98 (71%), Positives = 76/98 (77%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXX 365
           ++KLFNL K+DDVR YVNTYRRTF NKKGK  SKAPKIQRLVTPLTLQ            
Sbjct: 143 IRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCSKAPKIQRLVTPLTLQRKRARIAEKKKR 202

Query: 364 XXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 251
               KSEAAEYQKLLA RLKEQRDRRSES+AK+RS+LS
Sbjct: 203 VAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRLS 240

>RS6A_ARATH (O48549) 40S ribosomal protein S6-1|
          Length = 250

 Score =  132 bits (331), Expect = 8e-31
 Identities = 67/98 (68%), Positives = 77/98 (78%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXX 365
           ++KLFNL K+DDVR+YVNTYRR F NKKGK+VSKAPKIQRLVTPLTLQ            
Sbjct: 143 IRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKK 202

Query: 364 XXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 251
                S+AA+YQKLLA RLKEQRDRRSES+AK+RS+LS
Sbjct: 203 IAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLS 240

>RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment)|
          Length = 199

 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 55/90 (61%), Positives = 61/90 (67%)
 Frame = -1

Query: 520 KDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEA 341
           K+DDVR YVNT        KG   SKAPKIQRLVTPLTLQ                KSEA
Sbjct: 104 KEDDVRKYVNTTAEFTTKWKG---SKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEA 160

Query: 340 AEYQKLLAQRLKEQRDRRSESMAKRRSKLS 251
           AEYQKLLA RLKEQR++RSES+AK+RS+LS
Sbjct: 161 AEYQKLLASRLKEQREKRSESLAKKRSRLS 190

>RS6_RAT (P62755) 40S ribosomal protein S6|
          Length = 249

 Score = 86.3 bits (212), Expect = 5e-17
 Identities = 51/95 (53%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXX 368
           ++KLFNL K+DDVR YV    R  LNK+GKK  +KAPKIQRLVTP  LQ           
Sbjct: 141 IRKLFNLSKEDDVRQYVV---RKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQ 197

Query: 367 XXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR 263
                K EAAEY KLLA+R+KE +++R E +AKRR
Sbjct: 198 RTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232

>RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33)|
          Length = 249

 Score = 86.3 bits (212), Expect = 5e-17
 Identities = 51/95 (53%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXX 368
           ++KLFNL K+DDVR YV    R  LNK+GKK  +KAPKIQRLVTP  LQ           
Sbjct: 141 IRKLFNLSKEDDVRQYVV---RKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQ 197

Query: 367 XXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR 263
                K EAAEY KLLA+R+KE +++R E +AKRR
Sbjct: 198 RTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232

>RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33)|
          Length = 249

 Score = 86.3 bits (212), Expect = 5e-17
 Identities = 51/95 (53%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXX 368
           ++KLFNL K+DDVR YV    R  LNK+GKK  +KAPKIQRLVTP  LQ           
Sbjct: 141 IRKLFNLSKEDDVRQYVV---RKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQ 197

Query: 367 XXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR 263
                K EAAEY KLLA+R+KE +++R E +AKRR
Sbjct: 198 RTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232

>RS6_CHICK (P47838) 40S ribosomal protein S6|
          Length = 249

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 50/95 (52%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXX 368
           ++KLFNL K+DDVR YV    R  LNK+GKK  +KAPKIQRLVTP  LQ           
Sbjct: 141 IRKLFNLSKEDDVRQYVV---RKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQ 197

Query: 367 XXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR 263
                K EAA+Y KLLA+R+KE +++R E +AKRR
Sbjct: 198 RTQKNKEEAADYAKLLAKRMKEAKEKRQEQIAKRR 232

>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6|
          Length = 249

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 51/95 (53%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXX 368
           ++KLFNL K+DDVR YV    R  L K+GKK  +KAPKIQRLVTP  LQ           
Sbjct: 141 IRKLFNLSKEDDVRQYVV---RRPLTKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKRQ 197

Query: 367 XXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR 263
                K EAAEY KLLA+RLKE +++R E +AKRR
Sbjct: 198 RTQKNKDEAAEYAKLLAKRLKEAKEKRQEKIAKRR 232

>RS6_ONCMY (Q9YGF2) 40S ribosomal protein S6|
          Length = 249

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 48/95 (50%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXX 368
           ++KLFNL K+DDVR YV    R  L K+GKK  +KAP+IQRLVTP  LQ           
Sbjct: 141 IRKLFNLAKEDDVRQYVV---RRPLTKEGKKPRTKAPRIQRLVTPRVLQHKRRRIALKKQ 197

Query: 367 XXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR 263
                K EA+EY KLLA+R+KE +++R E +AKRR
Sbjct: 198 RTQKNKEEASEYAKLLAKRMKEAKEKRQEQIAKRR 232

>RS6_XENLA (P39017) 40S ribosomal protein S6|
          Length = 249

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 49/95 (51%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXX 368
           ++KLFNL K+DDVR YV    R  L K+GKK  +KAPKIQRLVTP  LQ           
Sbjct: 141 IRKLFNLSKEDDVRQYVV---RKPLAKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQ 197

Query: 367 XXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR 263
                K EA+EY KLLA+R KE +++R E +AKRR
Sbjct: 198 RTQKNKEEASEYAKLLAKRSKEAKEKRQEQIAKRR 232

>RS6_APLCA (Q9BMX5) 40S ribosomal protein S6|
          Length = 247

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 47/98 (47%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXX 368
           ++KLFNL K+DDVR YV   RR    + GKK  SKAPKIQRLVTP+ LQ           
Sbjct: 141 IRKLFNLSKEDDVRQYV--VRRPLPERDGKKAKSKAPKIQRLVTPVVLQRKRARMALKKK 198

Query: 367 XXXXXKSEAAEYQKLLAQRLKEQRDRRSE-SMAKRRSK 257
                + + AEY KLLAQR+KE ++R+ E   +  RSK
Sbjct: 199 RVTKKREDHAEYTKLLAQRMKEAKERKMERKRSNSRSK 236

>RS6_MANSE (Q94624) 40S ribosomal protein S6|
          Length = 253

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 46/99 (46%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSK----APKIQRLVTPLTLQXXXXXXXX 377
           ++KLFNL K+DDVR YV   +     K+GK+ +K    APKIQRLVTP+ LQ        
Sbjct: 141 IRKLFNLSKEDDVRRYV--VKALLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLAL 198

Query: 376 XXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRS 260
                   KS  A+Y KLLAQR KE + RR E + +RRS
Sbjct: 199 KKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEIKRRRS 237

>RS6_SPOFR (Q95V32) 40S ribosomal protein S6|
          Length = 253

 Score = 72.8 bits (177), Expect = 6e-13
 Identities = 45/99 (45%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSK----APKIQRLVTPLTLQXXXXXXXX 377
           ++KLFNL K+DDVR YV   +R    K+GK+ +K    APKIQRLVTP+ LQ        
Sbjct: 141 IRKLFNLSKEDDVRRYV--VKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLAL 198

Query: 376 XXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRS 260
                   K    +Y KLLAQR KE + RR E + +RRS
Sbjct: 199 KKKRLAKRKQSENDYAKLLAQRKKESKVRRQEELKRRRS 237

>RS6_YARLI (Q6C169) 40S ribosomal protein S6|
          Length = 242

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 41/97 (42%), Positives = 54/97 (55%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXX 365
           ++KLF L K+DDVR YV   RR    K GK  +KAPKIQRL+TP  L             
Sbjct: 141 IRKLFALSKEDDVRQYV--IRREVTTKSGKTYTKAPKIQRLITPRRLAHKAQLREKKVKA 198

Query: 364 XXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKL 254
               K  AAEY +LLA+R+ E++  ++E   +R S L
Sbjct: 199 IQASKDAAAEYAQLLAKRVAEKKSEKAEEKKRRASSL 235

>RS6_BRAFL (O01727) 40S ribosomal protein S6|
          Length = 244

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 46/96 (47%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS-KAPKIQRLVTPLTLQXXXXXXXXXXX 368
           ++KLFNL K+DDVR YV   RR    K+GKK   K PKIQRL+TP  LQ           
Sbjct: 141 IRKLFNLNKEDDVRQYV--VRRPLPQKEGKKQKFKTPKIQRLITPQRLQRKRHMRAVKRR 198

Query: 367 XXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRS 260
                + E A Y KLLA+R KE+R    E+ AKRRS
Sbjct: 199 RYAKQREEEATYAKLLAKRKKEER----EAHAKRRS 230

>RS6_DEBHA (Q6BXH8) 40S ribosomal protein S6|
          Length = 236

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 44/97 (45%), Positives = 56/97 (57%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXX 365
           ++K F L K+DDVR +V   RR  + K  KK +KAPKIQRLVTP TLQ            
Sbjct: 141 IRKFFGLTKEDDVRQFV--VRREVV-KGDKKYTKAPKIQRLVTPQTLQRKRALKAQKVKN 197

Query: 364 XXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKL 254
               +  AAEY +LLAQRL E++  R+E   +R S L
Sbjct: 198 AQQQRDAAAEYAQLLAQRLHERKAERAEIKKRRASSL 234

>RS6_DROME (P29327) 40S ribosomal protein S6|
          Length = 248

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXX 368
           ++KL+NL K+DDVR +V   RR    K  KK  SKAPKIQRL+TP+ LQ           
Sbjct: 141 IRKLYNLSKEDDVRRFV--VRRPLPAKDNKKATSKAPKIQRLITPVVLQRKHRRIALKKK 198

Query: 367 XXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKL 254
                K  +A+Y KLL QR KE + +R E+  +R + +
Sbjct: 199 RQIASKEASADYAKLLVQRKKESKAKREEAKRRRSASI 236

>RS6A_SCHPO (P05752) 40S ribosomal protein S6-A|
          Length = 239

 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKK-VSKAPKIQRLVTPLTLQXXXXXXXXXXX 368
           +++ FNL K+DDVR +V   R     K+GKK  +KAPKIQRLVTP TLQ           
Sbjct: 141 IRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRR 199

Query: 367 XXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKL 254
                + EAAE+ +L+A+R+ E + +R    A+R S L
Sbjct: 200 QAEKNREEAAEFAQLMAKRVAEAKQKREVVKARRASSL 237

>RS6B_SCHPO (Q9C0Z7) 40S ribosomal protein S6-B|
          Length = 239

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKK-VSKAPKIQRLVTPLTLQXXXXXXXXXXX 368
           +++ FNL K+DDVR +V   R     K+GKK  +KAPKIQRLVTP TLQ           
Sbjct: 141 IRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRR 199

Query: 367 XXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKL 254
                + EAAE+ +L+A+R+ E + ++    A+R S +
Sbjct: 200 QAEKNREEAAEFAQLMAKRVAEAKQKKEVVKARRASSM 237

>RS6_KLULA (Q6CM04) 40S ribosomal protein S6|
          Length = 236

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 40/97 (41%), Positives = 53/97 (54%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXX 365
           ++K F L K+DDVR YV    R  + K  K  +KAPKIQRLVTP  LQ            
Sbjct: 141 IRKFFGLTKEDDVRDYVI---RREVTKGDKSYTKAPKIQRLVTPQRLQRKRQQKSLKIKN 197

Query: 364 XXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKL 254
               +  AAEY +LLA+RL E++  ++E   +R S L
Sbjct: 198 AQAQREAAAEYAQLLAKRLSERKAEKAEVRKRRASSL 234

>RS6_ASHGO (Q74ZK3) 40S ribosomal protein S6|
          Length = 236

 Score = 65.9 bits (159), Expect = 7e-11
 Identities = 41/97 (42%), Positives = 54/97 (55%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXX 365
           ++K F L KDDDVR +V   RR  + K  K  +KAPKIQRLVTP  LQ            
Sbjct: 141 IRKFFGLTKDDDVRDFV--IRREVV-KGDKTYTKAPKIQRLVTPQRLQRKRHQRALKVRN 197

Query: 364 XXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKL 254
               +  AAEY +LLA+RL E++  ++E   +R S L
Sbjct: 198 AQAQREAAAEYAQLLAKRLTEKKAEKAEERKRRASSL 234

>RS6_AEDAL (Q9U762) 40S ribosomal protein S6|
          Length = 349

 Score = 65.5 bits (158), Expect = 9e-11
 Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXX 368
           ++KL+NL K+DDVR YV   +R    K GKK  +KAPKIQRL+TP+ LQ           
Sbjct: 141 IRKLYNLTKEDDVRQYV--VKRPLPEKDGKKPRTKAPKIQRLITPVVLQRKRHRLAIKKR 198

Query: 367 XXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 251
                K   AEY K+L  R +++R RR   ++  R   S
Sbjct: 199 RVESRKEAEAEYMKILHLRRRQERIRRRSRLSSMRDSRS 237

>RS6_YEAST (P02365) 40S ribosomal protein S6 (S10) (YS4) (RP9)|
          Length = 236

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 39/97 (40%), Positives = 53/97 (54%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXX 365
           ++K F L K+DDVR +V    R  + K  K  +KAPKIQRLVTP  LQ            
Sbjct: 141 IRKFFGLSKEDDVRDFVI---RREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRN 197

Query: 364 XXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKL 254
               +  AAEY +LLA+RL E++  ++E   +R S L
Sbjct: 198 AQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASSL 234

>RS6_CANGA (Q6FJH3) 40S ribosomal protein S6|
          Length = 236

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 39/97 (40%), Positives = 54/97 (55%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXX 365
           ++K F L K+DDVR +V    R  + K  K  +KAPKIQRLVTP  LQ            
Sbjct: 141 IRKFFGLTKEDDVRDFVI---RREVTKGEKTYTKAPKIQRLVTPQRLQRKRYQRNLKVRN 197

Query: 364 XXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKL 254
               +  AAEY +LLA+RL E++  ++E+  +R S L
Sbjct: 198 AQAQREAAAEYAQLLAKRLAERKAEKAETRKRRASSL 234

>RS6_AEDAE (Q9U761) 40S ribosomal protein S6|
          Length = 346

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXX 368
           ++KL+NL K+DDVR +V   +R    K GKK  +KAPKIQRL+TP+ LQ           
Sbjct: 141 IRKLYNLTKEDDVRQFV--VKRPLPEKDGKKARTKAPKIQRLITPVVLQRKRHRLAIKKR 198

Query: 367 XXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 251
                K   AEY K+L  R +++R RR   ++  R   S
Sbjct: 199 RVESRKEAEAEYMKILHLRRRQERIRRRSRLSSMRDSRS 237

>RS6_CAEEL (Q9NEN6) 40S ribosomal protein S6|
          Length = 246

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 39/98 (39%), Positives = 54/98 (55%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXX 365
           ++KLFNL K DDV  YV T+ +TF +   K +  APKIQRL+TP  +             
Sbjct: 141 IRKLFNLTKHDDVTKYVITHDKTFPDGVTKTI--APKIQRLITPARIARKKYLLRQKRNQ 198

Query: 364 XXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 251
               + +AA Y KLLA+  KE+ D +   +A+RRS  S
Sbjct: 199 KIKMRDDAAAYHKLLAKYSKEEHDAK---IARRRSSAS 233

>RS6_KLUMA (P41798) 40S ribosomal protein S6 (Ribosomal protein S10)|
          Length = 235

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 41/97 (42%), Positives = 52/97 (53%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXX 365
           ++K F L K+DDVR YV    R  + K  K  +KAPKIQRLVTP  LQ            
Sbjct: 141 IRKFFGLTKEDDVRDYVI---RREVTKGEKTYTKAPKIQRLVTPQRLQRKRQQKALKIKN 197

Query: 364 XXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKL 254
               +  AAEY +LLA+RL E   R++E   +R S L
Sbjct: 198 AQAQREAAAEYAQLLAKRLAE---RKAEVRKRRASSL 231

>RS6_LEIMA (Q9NE83) 40S ribosomal protein S6|
          Length = 249

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXX 365
           ++KLFNL + +DVR YV   RR  +    K   KAPKIQRL+TP                
Sbjct: 144 IRKLFNLSRTEDVRKYV--VRRRVVKSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAK 201

Query: 364 XXXXKSEAAEYQKLLA--QRLKEQRDRRSESMAK 269
                +E  EY +L+A  +R   QRD   +   K
Sbjct: 202 VRASAAERREYLRLIASNRRALRQRDHSKKHTRK 235

>RS6_LEIIN (O44012) 40S ribosomal protein S6|
          Length = 249

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
 Frame = -1

Query: 544 VKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXX 365
           ++KLFNL + +DVR YV   RR  +    K   KAPKIQRL+TP                
Sbjct: 144 IRKLFNLSRTEDVRKYV--VRRRVVKSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAK 201

Query: 364 XXXXKSEAAEYQKLLA--QRLKEQRDRRSESMAK 269
                +E  EY +L+A  +R   QRD   +   K
Sbjct: 202 VRASAAERREYLRLIASNRRALRQRDHSKKHTQK 235

>COX3_CHOCR (P48872) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide III)
          Length = 272

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 175 ATFSFLGLVIDAVLREHGYFIVGSFVTGVAFLCLYLMQFT 56
           A+       I  V+  H Y + GSF+  ++F CL L+ FT
Sbjct: 28  ASLCAFSCAIGGVMYMHAY-VNGSFILSISFFCLLLVMFT 66

>R1AB_PEDV7 (Q91AV2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
           [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
           [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
           proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown
           protein 1; 3C-like
          Length = 6781

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 502 SYVNTYRRTFLNKKGKKVSKAPKIQRLV 419
           +Y +TY  TFL+    KV++ PKI++ V
Sbjct: 179 TYCSTYEHTFLDGTAMKVARTPKIKKNV 206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,773,388
Number of Sequences: 219361
Number of extensions: 821162
Number of successful extensions: 2479
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 2394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2449
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)