ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32m11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016409.1| Zea mays clone Contig242 mRNA sequence 184 2e-43
2gb|AY106404.1| Zea mays PCO073866 mRNA sequence 143 8e-31
3dbj|AK065408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 7e-22
4dbj|AK058251.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 7e-22
5gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
6gb|AC146936.4| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
7gb|AC147426.2| Oryza sativa chromosome 3 B1377B10 genomic seque... 62 2e-06
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 62 2e-06
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
10gb|AY111458.1| Zea mays CL6657_1 mRNA sequence 52 0.002
11emb|Z99116.2|BSUB0013 Bacillus subtilis complete genome (section... 44 0.54
12dbj|D84432.1|BACJH642 Bacillus subtilis DNA, 283 Kb region conta... 44 0.54
13gb|M10082.1|BACSPO0AA B.subtilis spo0A (sporulation) gene, compl... 44 0.54
14ref|XM_862188.1| PREDICTED: Canis familiaris hypothetical protei... 42 2.1
15gb|AC124753.3| Mus musculus BAC clone RP23-284J4 from 9, complet... 42 2.1
16gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 42 2.1
17ref|NM_001017354.2| Xenopus tropicalis hypothetical protein LOC5... 40 8.4
18ref|XM_423657.1| PREDICTED: Gallus gallus similar to papillary r... 40 8.4
19gb|AC107740.17| Mus musculus chromosome 9, clone RP23-340D4, com... 40 8.4
20emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 8.4
21ref|XM_863390.1| PREDICTED: Canis familiaris similar to Pre-mRNA... 40 8.4
22ref|XM_863387.1| PREDICTED: Canis familiaris similar to Pre-mRNA... 40 8.4
23ref|XM_863384.1| PREDICTED: Canis familiaris similar to Pre-mRNA... 40 8.4
24ref|XM_863379.1| PREDICTED: Canis familiaris similar to Pre-mRNA... 40 8.4
25ref|XM_537770.2| PREDICTED: Canis familiaris similar to Pre-mRNA... 40 8.4
26ref|XM_863374.1| PREDICTED: Canis familiaris similar to Pre-mRNA... 40 8.4
27ref|XM_863371.1| PREDICTED: Canis familiaris similar to Pre-mRNA... 40 8.4
28ref|XM_863367.1| PREDICTED: Canis familiaris similar to Pre-mRNA... 40 8.4
29ref|XM_863362.1| PREDICTED: Canis familiaris similar to Pre-mRNA... 40 8.4
30ref|XM_863358.1| PREDICTED: Canis familiaris similar to Pre-mRNA... 40 8.4
31ref|XM_863355.1| PREDICTED: Canis familiaris similar to Pre-mRNA... 40 8.4
32ref|XM_863352.1| PREDICTED: Canis familiaris similar to Pre-mRNA... 40 8.4
33ref|XM_863350.1| PREDICTED: Canis familiaris similar to Pre-mRNA... 40 8.4
34ref|XM_863345.1| PREDICTED: Canis familiaris similar to Pre-mRNA... 40 8.4
35ref|XM_849291.1| PREDICTED: Canis familiaris similar to Pre-mRNA... 40 8.4
36gb|AC123921.3| Mus musculus BAC clone RP24-180J14 from chromosom... 40 8.4
37emb|AL356737.9| Human DNA sequence from clone RP11-118A1 on chro... 40 8.4
38emb|BX322662.12| Zebrafish DNA sequence from clone CH211-222C18 ... 40 8.4
39gb|AC012533.11| Homo sapiens, clone RP11-62E9, complete sequence 40 8.4
40ref|XM_695840.1| PREDICTED: Danio rerio similar to solute carrie... 40 8.4
41gb|AC008413.7| Homo sapiens chromosome 5 clone CTC-281M20, compl... 40 8.4
42gb|AC005713.8|AC005713 Drosophila melanogaster, chromosome 2R, r... 40 8.4
43ref|XM_392573.2| PREDICTED: Apis mellifera similar to ENSANGP000... 40 8.4
44gb|AC007520.8|AC007520 Drosophila melanogaster, chromosome 2R, r... 40 8.4
45gb|AC027316.3|AC027316 Homo sapiens chromosome 5 clone CTC-304C4... 40 8.4
46gb|AY854185.1| Cupressus sempervirens microsatellite cyp174 sequ... 40 8.4
47gb|AF180145.1|AF180145 Zymomonas mobilis GTP-binding protein Cgp... 40 8.4
48emb|CR848563.2| Xenopus tropicalis finished cDNA, clone TEgg110g07 40 8.4
49gb|AE003804.4| Drosophila melanogaster chromosome 2R, section 46... 40 8.4
50gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge... 40 8.4
51gb|AC156500.2| Mus musculus BAC clone RP24-126J12 from chromosom... 40 8.4 
>gb|BT016409.1| Zea mays clone Contig242 mRNA sequence
          Length = 994

 Score =  184 bits (93), Expect = 2e-43
 Identities = 207/245 (84%)
 Strand = Plus / Minus

                                                                       
Query: 344 aacataatctgcccctttggtcaactggaaaacatggacggcacagcgctctgcagctat 403
           ||||| ||||| |||||| || |||||||||||||| | ||| ||||| || ||||||| 
Sbjct: 630 aacattatctggccctttcgttaactggaaaacatgaagggcgcagcgttccgcagctag 571

                                                                       
Query: 404 acgtactggtgaactactatccttcaaagtatcaccaattgcagggcccaatatcgagat 463
           |||||| ||    |||   |||||||||| |||| ||||||| ||||||||||| |||  
Sbjct: 570 acgtacaggcatgctagagtccttcaaagcatcagcaattgccgggcccaatatagagtg 511

                                                                       
Query: 464 atgtgtagcaagagcggaatgatttatcttcgcagcagctttgatacaggacaatgatct 523
           ||||||||||||||| ||||||||| |||| ||||||||||||||||| ||||| |||||
Sbjct: 510 atgtgtagcaagagctgaatgatttgtctttgcagcagctttgatacacgacaaagatct 451

                                                                       
Query: 524 tctcctaacttcggttgagctatcacgcaaggccaagatgagcaattgaacaagttgcaa 583
           ||||||||||||  ||||   ||| |||||||||||||| ||||  ||||||||||||||
Sbjct: 450 tctcctaacttcacttgaatcatcgcgcaaggccaagataagcagctgaacaagttgcaa 391

                
Query: 584 ggtgc 588
           |||||
Sbjct: 390 ggtgc 386
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>gb|AY106404.1| Zea mays PCO073866 mRNA sequence
          Length = 717

 Score =  143 bits (72), Expect = 8e-31
 Identities = 162/192 (84%)
 Strand = Plus / Minus

                                                                       
Query: 344 aacataatctgcccctttggtcaactggaaaacatggacggcacagcgctctgcagctat 403
           ||||| ||||| |||||| || |||||||||||||| | ||| ||||| || ||||||| 
Sbjct: 213 aacattatctggccctttcgttaactggaaaacatgaagggcgcagcgttccgcagctag 154

                                                                       
Query: 404 acgtactggtgaactactatccttcaaagtatcaccaattgcagggcccaatatcgagat 463
           |||||| ||    |||   ||||||||||  ||| ||||||| ||||||||||| |||  
Sbjct: 153 acgtacaggcatgctagagtccttcaaagcttcagcaattgccgggcccaatatagagtg 94

                                                                       
Query: 464 atgtgtagcaagagcggaatgatttatcttcgcagcagctttgatacaggacaatgatct 523
           ||||||||||||||| ||||||||| |||| ||||||||||||||||| ||||| |||||
Sbjct: 93  atgtgtagcaagagctgaatgatttgtctttgcagcagctttgatacacgacaaagatct 34

                       
Query: 524 tctcctaacttc 535
           ||||||||||||
Sbjct: 33  tctcctaacttc 22
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>dbj|AK065408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013005O01, full
            insert sequence
          Length = 4034

 Score =  113 bits (57), Expect = 7e-22
 Identities = 215/267 (80%), Gaps = 3/267 (1%)
 Strand = Plus / Minus

                                                                        
Query: 241  tgtcatcgtcactgctttcactgtcgtcactctccacaggaagctttgcgagtcttctta 300
            |||||||||||||||| |||||| | ||||||||| | ||||| ||||| | | | ||||
Sbjct: 3776 tgtcatcgtcactgctctcactgccatcactctcctctggaagttttgcaattttcctta 3717

                                                                        
Query: 301  cttctaagcctgtcatgttggtgagatgcttttgcgcagtggcaacataatctgcccctt 360
            |||| || ||||||||||   | || |||||||| ||| | | |||||  ||||| ||||
Sbjct: 3716 cttccaaacctgtcatgt---tcaggtgcttttgagcaattgtaacattgtctgctcctt 3660

                                                                        
Query: 361  tggtcaactggaaaacatggacggcacagcgctctgcagctatacgtactggtgaactac 420
            | ||||||||||||||||| | |||||| |||||||| |||| ||| || || |   |  
Sbjct: 3659 ttgtcaactggaaaacatgaagggcacaacgctctgctgctacacgcacaggcgtgttcg 3600

                                                                        
Query: 421  tatccttcaaagtatcaccaattgcagggcccaatatcgagatatgtgtagcaagagcgg 480
            ||||||||||||  ||| | ||||| ||||||||||| |||| ||| |||||||| || |
Sbjct: 3599 tatccttcaaagcttcagctattgctgggcccaatattgagagatgcgtagcaagggctg 3540

                                       
Query: 481  aatgatttatcttcgcagcagctttga 507
              | ||||||||| |||||||||||||
Sbjct: 3539 ggttatttatctttgcagcagctttga 3513



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 83   tactgtatgttgtcaaaaaacggtgttt 110
            |||||||| ||||||||||| |||||||
Sbjct: 3937 tactgtattttgtcaaaaaagggtgttt 3910
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>dbj|AK058251.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-C02, full
            insert sequence
          Length = 1343

 Score =  113 bits (57), Expect = 7e-22
 Identities = 215/267 (80%), Gaps = 3/267 (1%)
 Strand = Plus / Minus

                                                                        
Query: 241  tgtcatcgtcactgctttcactgtcgtcactctccacaggaagctttgcgagtcttctta 300
            |||||||||||||||| |||||| | ||||||||| | ||||| ||||| | | | ||||
Sbjct: 1085 tgtcatcgtcactgctctcactgccatcactctcctctggaagttttgcaattttcctta 1026

                                                                        
Query: 301  cttctaagcctgtcatgttggtgagatgcttttgcgcagtggcaacataatctgcccctt 360
            |||| || ||||||||||   | || |||||||| ||| | | |||||  ||||| ||||
Sbjct: 1025 cttccaaacctgtcatgt---tcaggtgcttttgagcaattgtaacattgtctgctcctt 969

                                                                        
Query: 361  tggtcaactggaaaacatggacggcacagcgctctgcagctatacgtactggtgaactac 420
            | ||||||||||||||||| | |||||| |||||||| |||| ||| || || |   |  
Sbjct: 968  ttgtcaactggaaaacatgaagggcacaacgctctgctgctacacgcacaggcgtgttcg 909

                                                                        
Query: 421  tatccttcaaagtatcaccaattgcagggcccaatatcgagatatgtgtagcaagagcgg 480
            ||||||||||||  ||| | ||||| ||||||||||| |||| ||| |||||||| || |
Sbjct: 908  tatccttcaaagcttcagctattgctgggcccaatattgagagatgcgtagcaagggctg 849

                                       
Query: 481  aatgatttatcttcgcagcagctttga 507
              | ||||||||| |||||||||||||
Sbjct: 848  ggttatttatctttgcagcagctttga 822



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 83   tactgtatgttgtcaaaaaacggtgttt 110
            |||||||| ||||||||||| |||||||
Sbjct: 1246 tactgtattttgtcaaaaaagggtgttt 1219
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>gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone
             OSJNBa0031O09, complete sequence
          Length = 161339

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Minus

                                                                         
Query: 357   cctttggtcaactggaaaacatggacggcacagcgctctgcagctatacgtactggtgaa 416
             ||||| ||||||||||||||||| | |||||| |||||||| |||| ||| || || |  
Sbjct: 18060 ccttttgtcaactggaaaacatgaagggcacaacgctctgctgctacacgcacaggcgtg 18001

                                                                        
Query: 417   ctactatccttcaaagtatcaccaattgcagggcccaatatcgagatatgtgtagcaag 475
              |  ||||||||||||  ||| | ||||| ||||||||||| |||| ||| ||||||||
Sbjct: 18000 ttcgtatccttcaaagcttcagctattgctgggcccaatattgagagatgcgtagcaag 17942



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 83    tactgtatgttgtcaaaaaacggtgttt 110
             |||||||| ||||||||||| |||||||
Sbjct: 18634 tactgtattttgtcaaaaaagggtgttt 18607
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>gb|AC146936.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1154F06 map
              near C10769, complete sequence
          Length = 194856

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Plus

                                                                          
Query: 357    cctttggtcaactggaaaacatggacggcacagcgctctgcagctatacgtactggtgaa 416
              ||||| ||||||||||||||||| | |||||| |||||||| |||| ||| || || |  
Sbjct: 161372 ccttttgtcaactggaaaacatgaagggcacaacgctctgctgctacacgcacaggcgtg 161431

                                                                         
Query: 417    ctactatccttcaaagtatcaccaattgcagggcccaatatcgagatatgtgtagcaag 475
               |  ||||||||||||  ||| | ||||| ||||||||||| |||| ||| ||||||||
Sbjct: 161432 ttcgtatccttcaaagcttcagctattgctgggcccaatattgagagatgcgtagcaag 161490



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 83     tactgtatgttgtcaaaaaacggtgttt 110
              |||||||| ||||||||||| |||||||
Sbjct: 160798 tactgtattttgtcaaaaaagggtgttt 160825
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>gb|AC147426.2| Oryza sativa chromosome 3  B1377B10 genomic sequence, complete sequence
          Length = 184366

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Minus

                                                                          
Query: 357    cctttggtcaactggaaaacatggacggcacagcgctctgcagctatacgtactggtgaa 416
              ||||| ||||||||||||||||| | |||||| |||||||| |||| ||| || || |  
Sbjct: 161214 ccttttgtcaactggaaaacatgaagggcacaacgctctgctgctacacgcacaggcgtg 161155

                                                                         
Query: 417    ctactatccttcaaagtatcaccaattgcagggcccaatatcgagatatgtgtagcaag 475
               |  ||||||||||||  ||| | ||||| ||||||||||| |||| ||| ||||||||
Sbjct: 161154 ttcgtatccttcaaagcttcagctattgctgggcccaatattgagagatgcgtagcaag 161096



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 83     tactgtatgttgtcaaaaaacggtgttt 110
              |||||||| ||||||||||| |||||||
Sbjct: 161788 tactgtattttgtcaaaaaagggtgttt 161761
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Minus

                                                                            
Query: 357      cctttggtcaactggaaaacatggacggcacagcgctctgcagctatacgtactggtgaa 416
                ||||| ||||||||||||||||| | |||||| |||||||| |||| ||| || || |  
Sbjct: 28977919 ccttttgtcaactggaaaacatgaagggcacaacgctctgctgctacacgcacaggcgtg 28977860

                                                                           
Query: 417      ctactatccttcaaagtatcaccaattgcagggcccaatatcgagatatgtgtagcaag 475
                 |  ||||||||||||  ||| | ||||| ||||||||||| |||| ||| ||||||||
Sbjct: 28977859 ttcgtatccttcaaagcttcagctattgctgggcccaatattgagagatgcgtagcaag 28977801



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 83       tactgtatgttgtcaaaaaacggtgttt 110
                |||||||| ||||||||||| |||||||
Sbjct: 28978493 tactgtattttgtcaaaaaagggtgttt 28978466
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Minus

                                                                            
Query: 357      cctttggtcaactggaaaacatggacggcacagcgctctgcagctatacgtactggtgaa 416
                ||||| ||||||||||||||||| | |||||| |||||||| |||| ||| || || |  
Sbjct: 29069341 ccttttgtcaactggaaaacatgaagggcacaacgctctgctgctacacgcacaggcgtg 29069282

                                                                           
Query: 417      ctactatccttcaaagtatcaccaattgcagggcccaatatcgagatatgtgtagcaag 475
                 |  ||||||||||||  ||| | ||||| ||||||||||| |||| ||| ||||||||
Sbjct: 29069281 ttcgtatccttcaaagcttcagctattgctgggcccaatattgagagatgcgtagcaag 29069223



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 83       tactgtatgttgtcaaaaaacggtgttt 110
                |||||||| ||||||||||| |||||||
Sbjct: 29069915 tactgtattttgtcaaaaaagggtgttt 29069888
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>gb|AY111458.1| Zea mays CL6657_1 mRNA sequence
          Length = 449

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                       
Query: 344 aacataatctgcccctttggtcaactggaaaacatggacggcacagcgctctgcagctat 403
           ||||| ||||| |||||| ||||||||||||||||| | |||||| || || || |||| 
Sbjct: 368 aacattatctggccctttagtcaactggaaaacatgaagggcacaccgttccgctgctag 427

                 
Query: 404 acgtac 409
           ||||||
Sbjct: 428 acgtac 433
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>emb|Z99116.2|BSUB0013 Bacillus subtilis complete genome (section 13 of 21): from 2409151 to
              2613687
          Length = 204537

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 164    cctataagatgtatgaatggac 185
              ||||||||||||||||||||||
Sbjct: 107901 cctataagatgtatgaatggac 107922
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>dbj|D84432.1|BACJH642 Bacillus subtilis DNA, 283 Kb region containing skin element
          Length = 282700

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 164    cctataagatgtatgaatggac 185
              ||||||||||||||||||||||
Sbjct: 201786 cctataagatgtatgaatggac 201765
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>gb|M10082.1|BACSPO0AA B.subtilis spo0A (sporulation) gene, complete cds
          Length = 1353

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 164  cctataagatgtatgaatggac 185
            ||||||||||||||||||||||
Sbjct: 1318 cctataagatgtatgaatggac 1297
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>ref|XM_862188.1| PREDICTED: Canis familiaris hypothetical protein LOC610743
           (LOC610743), mRNA
          Length = 603

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 216 tggctgggcagtgtctatgtc 236
           |||||||||||||||||||||
Sbjct: 577 tggctgggcagtgtctatgtc 557
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>gb|AC124753.3| Mus musculus BAC clone RP23-284J4 from 9, complete sequence
          Length = 177378

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 309   cctgtcatgttggtgagatgc 329
             |||||||||||||||||||||
Sbjct: 99145 cctgtcatgttggtgagatgc 99125
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 167     ataagatgtatgaatggacag 187
               |||||||||||||||||||||
Sbjct: 3586826 ataagatgtatgaatggacag 3586846
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>ref|NM_001017354.2| Xenopus tropicalis hypothetical protein LOC550108 (LOC550108), mRNA
          Length = 460

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 365 caactggaaaacatggacgg 384
           ||||||||||||||||||||
Sbjct: 157 caactggaaaacatggacgg 138
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>ref|XM_423657.1| PREDICTED: Gallus gallus similar to papillary renal cell
           carcinoma-associated protein (LOC425977), mRNA
          Length = 1192

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 490 tcttcgcagcagctttgata 509
           ||||||||||||||||||||
Sbjct: 319 tcttcgcagcagctttgata 300
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>gb|AC107740.17| Mus musculus chromosome 9, clone RP23-340D4, complete sequence
          Length = 223066

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 270    ctctccacaggaagctttgc 289
              ||||||||||||||||||||
Sbjct: 156470 ctctccacaggaagctttgc 156489
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 576     agttgcaaggtgctgccccc 595
               ||||||||||||||||||||
Sbjct: 2405565 agttgcaaggtgctgccccc 2405546
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>ref|XM_863390.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing
            factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa
            U5 snRNP-specific protein) (p220), transcript variant 16
            (LOC480651), mRNA
          Length = 7275

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 551  caaggccaagatgagcaatt 570
            ||||||||||||||||||||
Sbjct: 2619 caaggccaagatgagcaatt 2600
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>ref|XM_863387.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing
            factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa
            U5 snRNP-specific protein) (p220), transcript variant 15
            (LOC480651), mRNA
          Length = 7293

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 551  caaggccaagatgagcaatt 570
            ||||||||||||||||||||
Sbjct: 2637 caaggccaagatgagcaatt 2618
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>ref|XM_863384.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing
            factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa
            U5 snRNP-specific protein) (p220), transcript variant 14
            (LOC480651), mRNA
          Length = 7320

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 551  caaggccaagatgagcaatt 570
            ||||||||||||||||||||
Sbjct: 2664 caaggccaagatgagcaatt 2645
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>ref|XM_863379.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing
            factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa
            U5 snRNP-specific protein) (p220), transcript variant 13
            (LOC480651), mRNA
          Length = 7365

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 551  caaggccaagatgagcaatt 570
            ||||||||||||||||||||
Sbjct: 2709 caaggccaagatgagcaatt 2690
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>ref|XM_537770.2| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing
            factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa
            U5 snRNP-specific protein) (p220), transcript variant 1
            (LOC480651), mRNA
          Length = 7329

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 551  caaggccaagatgagcaatt 570
            ||||||||||||||||||||
Sbjct: 2673 caaggccaagatgagcaatt 2654
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>ref|XM_863374.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing
            factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa
            U5 snRNP-specific protein) (p220), transcript variant 12
            (LOC480651), mRNA
          Length = 7281

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 551  caaggccaagatgagcaatt 570
            ||||||||||||||||||||
Sbjct: 2625 caaggccaagatgagcaatt 2606
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>ref|XM_863371.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing
            factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa
            U5 snRNP-specific protein) (p220), transcript variant 11
            (LOC480651), mRNA
          Length = 7284

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 551  caaggccaagatgagcaatt 570
            ||||||||||||||||||||
Sbjct: 2628 caaggccaagatgagcaatt 2609
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>ref|XM_863367.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing
            factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa
            U5 snRNP-specific protein) (p220), transcript variant 10
            (LOC480651), mRNA
          Length = 7260

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 551  caaggccaagatgagcaatt 570
            ||||||||||||||||||||
Sbjct: 2604 caaggccaagatgagcaatt 2585
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>ref|XM_863362.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing
            factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa
            U5 snRNP-specific protein) (p220), transcript variant 9
            (LOC480651), mRNA
          Length = 7287

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 551  caaggccaagatgagcaatt 570
            ||||||||||||||||||||
Sbjct: 2631 caaggccaagatgagcaatt 2612
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>ref|XM_863358.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing
            factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa
            U5 snRNP-specific protein) (p220), transcript variant 8
            (LOC480651), mRNA
          Length = 6884

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 551  caaggccaagatgagcaatt 570
            ||||||||||||||||||||
Sbjct: 2625 caaggccaagatgagcaatt 2606
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>ref|XM_863355.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing
            factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa
            U5 snRNP-specific protein) (p220), transcript variant 7
            (LOC480651), mRNA
          Length = 6153

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 551  caaggccaagatgagcaatt 570
            ||||||||||||||||||||
Sbjct: 2625 caaggccaagatgagcaatt 2606
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>ref|XM_863352.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing
            factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa
            U5 snRNP-specific protein) (p220), transcript variant 6
            (LOC480651), mRNA
          Length = 6429

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 551  caaggccaagatgagcaatt 570
            ||||||||||||||||||||
Sbjct: 2625 caaggccaagatgagcaatt 2606
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>ref|XM_863350.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing
            factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa
            U5 snRNP-specific protein) (p220), transcript variant 5
            (LOC480651), mRNA
          Length = 4774

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 551  caaggccaagatgagcaatt 570
            ||||||||||||||||||||
Sbjct: 2625 caaggccaagatgagcaatt 2606
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>ref|XM_863345.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing
            factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa
            U5 snRNP-specific protein) (p220), transcript variant 3
            (LOC480651), mRNA
          Length = 6993

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 551  caaggccaagatgagcaatt 570
            ||||||||||||||||||||
Sbjct: 2625 caaggccaagatgagcaatt 2606
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>ref|XM_849291.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing
            factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa
            U5 snRNP-specific protein) (p220), transcript variant 2
            (LOC480651), mRNA
          Length = 7281

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 551  caaggccaagatgagcaatt 570
            ||||||||||||||||||||
Sbjct: 2625 caaggccaagatgagcaatt 2606
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>gb|AC123921.3| Mus musculus BAC clone RP24-180J14 from chromosome 8, complete sequence
          Length = 183936

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   gctgtggctgggcagtgtct 231
             ||||||||||||||||||||
Sbjct: 94689 gctgtggctgggcagtgtct 94670
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>emb|AL356737.9| Human DNA sequence from clone RP11-118A1 on chromosome 13 Contains 2
              novel genes, complete sequence
          Length = 120269

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 558    aagatgagcaattgaacaag 577
              ||||||||||||||||||||
Sbjct: 114246 aagatgagcaattgaacaag 114265
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>emb|BX322662.12| Zebrafish DNA sequence from clone CH211-222C18 in linkage group 23,
             complete sequence
          Length = 209409

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 374   aacatggacggcacagcgct 393
             ||||||||||||||||||||
Sbjct: 93773 aacatggacggcacagcgct 93792
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>gb|AC012533.11| Homo sapiens, clone RP11-62E9, complete sequence
          Length = 191358

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 572   aacaagttgcaaggtgctgc 591
             ||||||||||||||||||||
Sbjct: 61384 aacaagttgcaaggtgctgc 61403
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>ref|XM_695840.1| PREDICTED: Danio rerio similar to solute carrier family 1
           (glutamate transporter), member 7 (LOC572156), mRNA
          Length = 1032

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 374 aacatggacggcacagcgct 393
           ||||||||||||||||||||
Sbjct: 748 aacatggacggcacagcgct 767
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>gb|AC008413.7| Homo sapiens chromosome 5 clone CTC-281M20, complete sequence
          Length = 143200

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   atcaccaattgcagggccca 453
             ||||||||||||||||||||
Sbjct: 10654 atcaccaattgcagggccca 10673
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>gb|AC005713.8|AC005713 Drosophila melanogaster, chromosome 2R, region 54A1-54B2, BAC clone
             BACR48A11, complete sequence
          Length = 157507

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    tactgtatgttgtcaaaaaa 102
             ||||||||||||||||||||
Sbjct: 26172 tactgtatgttgtcaaaaaa 26191
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>ref|XM_392573.2| PREDICTED: Apis mellifera similar to ENSANGP00000027066 (LOC409045),
            mRNA
          Length = 3576

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 243  tcatcgtcactgctttcact 262
            ||||||||||||||||||||
Sbjct: 1844 tcatcgtcactgctttcact 1825
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>gb|AC007520.8|AC007520 Drosophila melanogaster, chromosome 2R, region 53D-54A, BAC clone
             BACR11M15, complete sequence
          Length = 170994

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    tactgtatgttgtcaaaaaa 102
             ||||||||||||||||||||
Sbjct: 98810 tactgtatgttgtcaaaaaa 98829
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>gb|AC027316.3|AC027316 Homo sapiens chromosome 5 clone CTC-304C4, complete sequence
          Length = 112361

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   atcaccaattgcagggccca 453
             ||||||||||||||||||||
Sbjct: 53474 atcaccaattgcagggccca 53493
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>gb|AY854185.1| Cupressus sempervirens microsatellite cyp174 sequence
          Length = 208

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 241 tgtcatcgtcactgctttca 260
           ||||||||||||||||||||
Sbjct: 200 tgtcatcgtcactgctttca 181
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>gb|AF180145.1|AF180145 Zymomonas mobilis GTP-binding protein CgpA (cgpA), 60KD inner-membrane
             protein yidC (yidC), hypothetical protein,
             glutamine-pyruvate aminotransferase gltB (gltB), glutamate
             synthase small subunit gltS (gltS), undecaprenol kinase
             udk (udk), hypothetical protein, NADH dehydrogenase,
             hypothetical protein; zm12orf5, hypothetical protein,
             aspartate aminotransferase A, beta-hydroxysteroid
             dehydrogenase, phosphomannomutase pmm (pmm),
             thiamine-phosphate pyrophosphorylase, hypothetical
             protein, hypothetical protein, elongation factor P efp
             (efp), cystathionine-gamma-lyase, hypothetical protein,
             isoleucyl-tRNA synthetase, riboflavin kinase ribF (ribF),
             and dihydrofolate reductase typeIII genes, complete cds;
             tRNA-Pro gene, complete sequence; 3-oxoacyl-(acyl carrier
             ptn) reductase gene, partial cds; and unknown genes
          Length = 38691

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 342   gcaacataatctgccccttt 361
             ||||||||||||||||||||
Sbjct: 25748 gcaacataatctgccccttt 25729
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>emb|CR848563.2| Xenopus tropicalis finished cDNA, clone TEgg110g07
          Length = 460

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 365 caactggaaaacatggacgg 384
           ||||||||||||||||||||
Sbjct: 157 caactggaaaacatggacgg 138
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>gb|AE003804.4| Drosophila melanogaster chromosome 2R, section 46 of 73 of the complete
              sequence
          Length = 260337

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     tactgtatgttgtcaaaaaa 102
              ||||||||||||||||||||
Sbjct: 161935 tactgtatgttgtcaaaaaa 161954
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>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    gcaacataatctgccccttt 361
              ||||||||||||||||||||
Sbjct: 329346 gcaacataatctgccccttt 329365
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>gb|AC156500.2| Mus musculus BAC clone RP24-126J12 from chromosome 9, complete sequence
          Length = 152842

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   ctctccacaggaagctttgc 289
             ||||||||||||||||||||
Sbjct: 77943 ctctccacaggaagctttgc 77924


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,611,091
Number of Sequences: 3902068
Number of extensions: 4611091
Number of successful extensions: 93419
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93207
Number of HSP's gapped (non-prelim): 210
length of query: 620
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 597
effective length of database: 17,143,297,704
effective search space: 10234548729288
effective search space used: 10234548729288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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