ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32m05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF031231.1|AF031231 Triticum aestivum S222 (S222) mRNA, compl... 581 e-162
2ref|XM_466452.1| Oryza sativa (japonica cultivar-group), mRNA 66 2e-07
3ref|XM_506842.1| PREDICTED Oryza sativa (japonica cultivar-group... 66 2e-07
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
5dbj|AP005643.3| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
6dbj|AK100542.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 2e-07
7dbj|AK100170.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 2e-07
8gb|BT023994.1| Zea mays clone EL01N0408C01 mRNA sequence 60 1e-05
9gb|AY111758.1| Zea mays CL9639_1 mRNA sequence 58 4e-05
10ref|XM_472836.1| Oryza sativa (japonica cultivar-group), predic... 48 0.036
11emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4,... 48 0.036
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
13dbj|AK070339.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.036
14dbj|AK070336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.036
15gb|AC164568.1| Mus musculus BAC clone RP23-7A23 from chromosome ... 46 0.14
16gb|AC154664.2| Mus musculus BAC clone RP24-284G3 from chromosome... 46 0.14
17gb|AC005611.1| Homo sapiens chromosome 5, BAC clone 259m9 (LBNL ... 44 0.56
18gb|BC017066.1| Homo sapiens hypothetical protein MGC12103, mRNA ... 44 0.56
19emb|AJ515158.1|HSA515158 Homo sapiens mRNA for hypothetical prot... 44 0.56
20emb|AJ441110.3|HSA441110 Homo sapiens mRNA for hypothetical prot... 44 0.56
21emb|AJ515429.1|HSA515429 Homo sapiens mRNA for hypothetical prot... 44 0.56
22emb|AJ515428.1|HSA515428 Homo sapiens mRNA for hypothetical prot... 44 0.56
23emb|AJ496322.1|HSA496322 Homo sapiens partial mRNA for hypotheti... 44 0.56
24emb|AJ427339.1|HSA427339 Homo sapiens mRNA for hypothetical prot... 44 0.56
25emb|AL832600.2|HSM803910 Homo sapiens mRNA; cDNA DKFZp451C1217 (... 44 0.56
26gb|AC010424.9| Homo sapiens chromosome 5 clone CTD-2195M15, comp... 44 0.56
27dbj|AK057437.1| Homo sapiens cDNA FLJ32875 fis, clone TESTI2004031 44 0.56
28ref|NM_130809.2| Homo sapiens hypothetical protein MGC12103 (LOC... 44 0.56
29emb|AL832056.1|HSM803363 Homo sapiens mRNA; cDNA DKFZp313P0510 (... 44 0.56
30emb|AL831963.1|HSM803269 Homo sapiens mRNA; cDNA DKFZp451D162 (f... 44 0.56
31dbj|AK090486.1| Homo sapiens mRNA for FLJ00410 protein 44 0.56
32gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 42 2.2
33dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 2.2
34emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 42 2.2
35gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 2.2
36gb|AY842481.1| Homo sapiens growth associated protein 43 (GAP43)... 40 8.8
37gb|AE010334.1| Methanopyrus kandleri AV19 section 33 of 157 of t... 40 8.8
38gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.8
39gb|AC183547.2| Pan troglodytes BAC clone CH251-213F19 from chrom... 40 8.8
40gb|AF024498.1| Caenorhabditis elegans cosmid F40H7, complete seq... 40 8.8
41emb|AL450324.10| Human DNA sequence from clone RP11-307F22 on ch... 40 8.8
42emb|AL354735.14| Human DNA sequence from clone RP11-738I14 on ch... 40 8.8
43emb|AL844157.5| Mouse DNA sequence from clone RP24-313C24 on chr... 40 8.8
44gb|AC182636.3| Pan troglodytes BAC clone CH251-519F5 from chromo... 40 8.8
45gb|AC182427.3| Pan troglodytes BAC clone CH251-692F19 from chrom... 40 8.8
46gb|AC092468.9| Homo sapiens 3 BAC RP11-326J18 (Roswell Park Canc... 40 8.8
47gb|AC099501.2| Homo sapiens chromosome 5 clone RP11-20O13, compl... 40 8.8
48gb|AC096915.2| Homo sapiens chromosome 3 clone RP11-24H1, comple... 40 8.8
49dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
50gb|AC099778.2| Homo sapiens chromosome 3 clone RP11-708J19, comp... 40 8.8
51dbj|AK062293.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.8
52emb|AL139317.5|CNS01DXI Human chromosome 14 DNA sequence BAC R-5... 40 8.8
53emb|AL772326.5| Mouse DNA sequence from clone RP23-267E14 on chr... 40 8.8
54emb|AL663067.14| Mouse DNA sequence from clone RP23-23G3 on chro... 40 8.8
55gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 40 8.8
56gb|M58579.1|RABACE Rabbit angiotensin-converting enzyme (ACE-P) ... 40 8.8
57gb|L23202.1|RABANTENIS Rabbit angiotensin-converting isozyme gene 40 8.8 
>gb|AF031231.1|AF031231 Triticum aestivum S222 (S222) mRNA, complete cds
          Length = 1748

 Score =  581 bits (293), Expect = e-162
 Identities = 381/409 (93%), Gaps = 1/409 (0%)
 Strand = Plus / Minus

                                                                        
Query: 238  ggcggcgtgggagggcgccggacctgtggtgttgctcacaggaggaaggggcggctccgc 297
            |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1488 ggcggcgtgggagggcgctggagctgtggtgttgctcacaggaggaaggggcggctccgc 1429

                                                                        
Query: 298  cacgtccgagtccgtcaacaccggcattggggccattgctggtggcaatgctgctttatc 357
            |||||| ||| | ||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 1428 cacgtcggagacagtcaacaccggctctggggccattgctggtggcaatgctgctttatc 1369

                                                                        
Query: 358  cggtatgaccccaaggaggccgccgcgctggggaggcagcatgtagtagggcgtcttgtc 417
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1368 ctgtatgaccccaaggaggccgccgcgctggggaggcagcatgtagtagggcgtcttgtc 1309

                                                                        
Query: 418  ccccatcttcctgcacgagttcagtttgtatctatgggccgtcccggggaaatcggtgat 477
            ||| || |||||||||||||||| ||||||||| || |||||||||||||||||||||||
Sbjct: 1308 ccc-atgttcctgcacgagttcaatttgtatctgtgagccgtcccggggaaatcggtgat 1250

                                                                        
Query: 478  gagtccatccactccccctccctctacacctttgtgcacaagggcattaatctgtgccgt 537
            ||||||||||||||| ||||||||| | ||||||||||||||||| || ||||||| |||
Sbjct: 1249 gagtccatccactccgcctccctctccccctttgtgcacaagggcgttgatctgtgacgt 1190

                                                                        
Query: 538  ggcatctgagaagaagtcatacggctgagaaaggaactcgttcatcagcagatagacata 597
            ||| |||||||||||||| ||||| ||||||| |||||||||| |||||||||| |||||
Sbjct: 1189 ggcgtctgagaagaagtcgtacggttgagaaaagaactcgttcctcagcagatacacata 1130

                                                             
Query: 598  gactggaaggccagcagactgcagggacttgacaagaggattcgtctgg 646
            ||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1129 gactggaagaccagcagactgcagggacttgacgagagggttcgtctgg 1081



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 84/97 (86%), Gaps = 6/97 (6%)
 Strand = Plus / Minus

                                                                        
Query: 49   atccaggcatgaatcatcattcaacctcaacgtccaccacccccaaatacttgtacagcc 108
            ||||||||||||||||||||| ||||||||| ||||||| ||||||||      | | ||
Sbjct: 1685 atccaggcatgaatcatcatttaacctcaacatccacca-ccccaaat-----gagaccc 1632

                                                 
Query: 109  aaaccaaaaggaaaaatgaatcgctcgctacatagaa 145
            ||| |||||||||||| ||||||||||||||||||||
Sbjct: 1631 aaagcaaaaggaaaaacgaatcgctcgctacatagaa 1595



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 174  ctcagataagcagagaagcgcatagcaccagca 206
            |||||||||||||||||||||||||||| ||||
Sbjct: 1558 ctcagataagcagagaagcgcatagcactagca 1526
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>ref|XM_466452.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2783

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                        
Query: 527  atctgtgccgtggcatctgagaagaagtcatacggctgagaaaggaactcgttcatcagc 586
            |||||||  ||||| |||| ||||||||||| ||| || ||||  ||||||||||| |||
Sbjct: 2155 atctgtgttgtggcgtctgcgaagaagtcattcggttgcgaaacaaactcgttcatgagc 2096

                                                 
Query: 587  agatagacatagactggaaggccagcagactgcaggg 623
            |  || ||||| || ||||||||||| ||||||||||
Sbjct: 2095 acgtaaacataaacgggaaggccagcggactgcaggg 2059



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 293  tccgccacgtccgagtccgtcaacaccggcattggggccattgctggtggc 343
            ||||| ||||| ||||||||||| |  |||||||| |||||||||||||||
Sbjct: 2383 tccgcgacgtcggagtccgtcaagagaggcattggcgccattgctggtggc 2333



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 184  cagagaagcgcatagcaccagcagc 208
            |||||||||||||||||||||||||
Sbjct: 2501 cagagaagcgcatagcaccagcagc 2477
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>ref|XM_506842.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0046O12.21
            mRNA
          Length = 2827

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                        
Query: 527  atctgtgccgtggcatctgagaagaagtcatacggctgagaaaggaactcgttcatcagc 586
            |||||||  ||||| |||| ||||||||||| ||| || ||||  ||||||||||| |||
Sbjct: 2167 atctgtgttgtggcgtctgcgaagaagtcattcggttgcgaaacaaactcgttcatgagc 2108

                                                 
Query: 587  agatagacatagactggaaggccagcagactgcaggg 623
            |  || ||||| || ||||||||||| ||||||||||
Sbjct: 2107 acgtaaacataaacgggaaggccagcggactgcaggg 2071



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 293  tccgccacgtccgagtccgtcaacaccggcattggggccattgctggtggc 343
            ||||| ||||| ||||||||||| |  |||||||| |||||||||||||||
Sbjct: 2395 tccgcgacgtcggagtccgtcaagagaggcattggcgccattgctggtggc 2345



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 184  cagagaagcgcatagcaccagcagc 208
            |||||||||||||||||||||||||
Sbjct: 2513 cagagaagcgcatagcaccagcagc 2489
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                            
Query: 527      atctgtgccgtggcatctgagaagaagtcatacggctgagaaaggaactcgttcatcagc 586
                |||||||  ||||| |||| ||||||||||| ||| || ||||  ||||||||||| |||
Sbjct: 22710880 atctgtgttgtggcgtctgcgaagaagtcattcggttgcgaaacaaactcgttcatgagc 22710821

                                                     
Query: 587      agatagacatagactggaaggccagcagactgcaggg 623
                |  || ||||| || ||||||||||| ||||||||||
Sbjct: 22710820 acgtaaacataaacgggaaggccagcggactgcaggg 22710784



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                   
Query: 293      tccgccacgtccgagtccgtcaacaccggcattggggccattgctggtggc 343
                ||||| ||||| ||||||||||| |  |||||||| |||||||||||||||
Sbjct: 22711229 tccgcgacgtcggagtccgtcaagagaggcattggcgccattgctggtggc 22711179



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 184      cagagaagcgcatagcaccagcagc 208
                |||||||||||||||||||||||||
Sbjct: 22711347 cagagaagcgcatagcaccagcagc 22711323
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>dbj|AP005643.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0046O12
          Length = 128223

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                         
Query: 527   atctgtgccgtggcatctgagaagaagtcatacggctgagaaaggaactcgttcatcagc 586
             |||||||  ||||| |||| ||||||||||| ||| || ||||  ||||||||||| |||
Sbjct: 69676 atctgtgttgtggcgtctgcgaagaagtcattcggttgcgaaacaaactcgttcatgagc 69617

                                                  
Query: 587   agatagacatagactggaaggccagcagactgcaggg 623
             |  || ||||| || ||||||||||| ||||||||||
Sbjct: 69616 acgtaaacataaacgggaaggccagcggactgcaggg 69580



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                
Query: 293   tccgccacgtccgagtccgtcaacaccggcattggggccattgctggtggc 343
             ||||| ||||| ||||||||||| |  |||||||| |||||||||||||||
Sbjct: 70025 tccgcgacgtcggagtccgtcaagagaggcattggcgccattgctggtggc 69975



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 184   cagagaagcgcatagcaccagcagc 208
             |||||||||||||||||||||||||
Sbjct: 70143 cagagaagcgcatagcaccagcagc 70119
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>dbj|AK100542.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102L08, full
            insert sequence
          Length = 2782

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                        
Query: 527  atctgtgccgtggcatctgagaagaagtcatacggctgagaaaggaactcgttcatcagc 586
            |||||||  ||||| |||| ||||||||||| ||| || ||||  ||||||||||| |||
Sbjct: 2154 atctgtgttgtggcgtctgcgaagaagtcattcggttgcgaaacaaactcgttcatgagc 2095

                                                 
Query: 587  agatagacatagactggaaggccagcagactgcaggg 623
            |  || ||||| || ||||||||||| ||||||||||
Sbjct: 2094 acgtaaacataaacgggaaggccagcggactgcaggg 2058



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 293  tccgccacgtccgagtccgtcaacaccggcattggggccattgctggtggc 343
            ||||| ||||| ||||||||||| |  |||||||| |||||||||||||||
Sbjct: 2382 tccgcgacgtcggagtccgtcaagagaggcattggcgccattgctggtggc 2332



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 184  cagagaagcgcatagcaccagcagc 208
            |||||||||||||||||||||||||
Sbjct: 2500 cagagaagcgcatagcaccagcagc 2476
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>dbj|AK100170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025E23, full
            insert sequence
          Length = 2824

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                        
Query: 527  atctgtgccgtggcatctgagaagaagtcatacggctgagaaaggaactcgttcatcagc 586
            |||||||  ||||| |||| ||||||||||| ||| || ||||  ||||||||||| |||
Sbjct: 2164 atctgtgttgtggcgtctgcgaagaagtcattcggttgcgaaacaaactcgttcatgagc 2105

                                                 
Query: 587  agatagacatagactggaaggccagcagactgcaggg 623
            |  || ||||| || ||||||||||| ||||||||||
Sbjct: 2104 acgtaaacataaacgggaaggccagcggactgcaggg 2068



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 293  tccgccacgtccgagtccgtcaacaccggcattggggccattgctggtggc 343
            ||||| ||||| ||||||||||| |  |||||||| |||||||||||||||
Sbjct: 2392 tccgcgacgtcggagtccgtcaagagaggcattggcgccattgctggtggc 2342



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 184  cagagaagcgcatagcaccagcagc 208
            |||||||||||||||||||||||||
Sbjct: 2510 cagagaagcgcatagcaccagcagc 2486
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>gb|BT023994.1| Zea mays clone EL01N0408C01 mRNA sequence
          Length = 1673

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 94/114 (82%), Gaps = 1/114 (0%)
 Strand = Plus / Minus

                                                                        
Query: 520  ggcattaatctgtgccgtggcatctgagaagaagtcatacggctgagaaaggaactcgtt 579
            ||||||||||||||  ||||| |||| | ||||||||| |||||||||    ||||| ||
Sbjct: 1065 ggcattaatctgtgaagtggcgtctgcg-agaagtcattcggctgagatgcaaactcatt 1007

                                                                  
Query: 580  catcagcagatagacatagactggaaggccagcagactgcagggacttgacaag 633
            ||| |||| |||||| || ||| | ||||| |||||||| |||||| |||||||
Sbjct: 1006 catgagcacatagacgtaaacttggaggcccgcagactgaagggacgtgacaag 953
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>gb|AY111758.1| Zea mays CL9639_1 mRNA sequence
          Length = 1119

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                       
Query: 521 gcattaatctgtgccgtggcatctgagaagaagtcatacggctgagaaaggaactcgttc 580
           |||||||||||||  ||||| |||| ||||||||||| |||||||||    ||||| |||
Sbjct: 581 gcattaatctgtgaagtggcgtctgcgaagaagtcattcggctgagatgcaaactcattc 640

                                                        
Query: 581 atcagcagatagacatagactggaaggccagcagactgcagggac 625
           || |||| |||||| || ||| | | ||| |||||||| ||||||
Sbjct: 641 atgagcacatagacgtaaacttggaagcccgcagactgaagggac 685
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>ref|XM_472836.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2223

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 287  ggcggctccgccacgtccgagtccgtca 314
            ||||||||||||||||||||| ||||||
Sbjct: 2111 ggcggctccgccacgtccgagcccgtca 2084



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 545  gagaagaagtcatacggctgagaaaggaactcgttcat 582
            ||||||||||| || |||||||||  ||||||||||||
Sbjct: 1868 gagaagaagtcgtatggctgagaagcgaactcgttcat 1831
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>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23,
             complete sequence
          Length = 130273

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 287   ggcggctccgccacgtccgagtccgtca 314
             ||||||||||||||||||||| ||||||
Sbjct: 28659 ggcggctccgccacgtccgagcccgtca 28632



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 545   gagaagaagtcatacggctgagaaaggaactcgttcat 582
             ||||||||||| || |||||||||  ||||||||||||
Sbjct: 28152 gagaagaagtcgtatggctgagaagcgaactcgttcat 28115
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 287      ggcggctccgccacgtccgagtccgtca 314
                ||||||||||||||||||||| ||||||
Sbjct: 23585978 ggcggctccgccacgtccgagcccgtca 23585951



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 545      gagaagaagtcatacggctgagaaaggaactcgttcat 582
                ||||||||||| || |||||||||  ||||||||||||
Sbjct: 23585471 gagaagaagtcgtatggctgagaagcgaactcgttcat 23585434
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>dbj|AK070339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048K03, full
            insert sequence
          Length = 2493

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 287  ggcggctccgccacgtccgagtccgtca 314
            ||||||||||||||||||||| ||||||
Sbjct: 2229 ggcggctccgccacgtccgagcccgtca 2202



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 545  gagaagaagtcatacggctgagaaaggaactcgttcat 582
            ||||||||||| || |||||||||  ||||||||||||
Sbjct: 1986 gagaagaagtcgtatggctgagaagcgaactcgttcat 1949
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>dbj|AK070336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047B14, full
            insert sequence
          Length = 1581

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 287  ggcggctccgccacgtccgagtccgtca 314
            ||||||||||||||||||||| ||||||
Sbjct: 1204 ggcggctccgccacgtccgagcccgtca 1177



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 545 gagaagaagtcatacggctgagaaaggaactcgttcat 582
           ||||||||||| || |||||||||  ||||||||||||
Sbjct: 961 gagaagaagtcgtatggctgagaagcgaactcgttcat 924
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>gb|AC164568.1| Mus musculus BAC clone RP23-7A23 from chromosome 14, complete sequence
          Length = 227675

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 152   gcagaaaagaatggtcctcagtc 174
             |||||||||||||||||||||||
Sbjct: 19829 gcagaaaagaatggtcctcagtc 19851
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>gb|AC154664.2| Mus musculus BAC clone RP24-284G3 from chromosome 14, complete sequence
          Length = 157658

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 152   gcagaaaagaatggtcctcagtc 174
             |||||||||||||||||||||||
Sbjct: 38640 gcagaaaagaatggtcctcagtc 38618
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>gb|AC005611.1| Homo sapiens chromosome 5, BAC clone 259m9 (LBNL H193), complete
             sequence
          Length = 107190

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 272   ctcacaggaggaaggggcggct 293
             ||||||||||||||||||||||
Sbjct: 33192 ctcacaggaggaaggggcggct 33171
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>gb|BC017066.1| Homo sapiens hypothetical protein MGC12103, mRNA (cDNA clone
           MGC:9628 IMAGE:3913311), complete cds
          Length = 1702

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ctcacaggaggaaggggcggct 293
           ||||||||||||||||||||||
Sbjct: 325 ctcacaggaggaaggggcggct 304
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>emb|AJ515158.1|HSA515158 Homo sapiens mRNA for hypothetical protein (ORF1), splice variant 4
          Length = 2750

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ctcacaggaggaaggggcggct 293
           ||||||||||||||||||||||
Sbjct: 341 ctcacaggaggaaggggcggct 320
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>emb|AJ441110.3|HSA441110 Homo sapiens mRNA for hypothetical protein, splice variant 1
          Length = 2724

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ctcacaggaggaaggggcggct 293
           ||||||||||||||||||||||
Sbjct: 341 ctcacaggaggaaggggcggct 320
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>emb|AJ515429.1|HSA515429 Homo sapiens mRNA for hypothetical protein (ORF1), splice variant 6
          Length = 4732

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ctcacaggaggaaggggcggct 293
           ||||||||||||||||||||||
Sbjct: 341 ctcacaggaggaaggggcggct 320
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>emb|AJ515428.1|HSA515428 Homo sapiens mRNA for hypothetical protein (ORF1), splice variant 5
          Length = 4685

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ctcacaggaggaaggggcggct 293
           ||||||||||||||||||||||
Sbjct: 341 ctcacaggaggaaggggcggct 320
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>emb|AJ496322.1|HSA496322 Homo sapiens partial mRNA for hypothetical protein, splice variant
           2
          Length = 1189

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ctcacaggaggaaggggcggct 293
           ||||||||||||||||||||||
Sbjct: 341 ctcacaggaggaaggggcggct 320
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>emb|AJ427339.1|HSA427339 Homo sapiens mRNA for hypothetical protein, splice variant 3
          Length = 1895

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ctcacaggaggaaggggcggct 293
           ||||||||||||||||||||||
Sbjct: 341 ctcacaggaggaaggggcggct 320
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>emb|AL832600.2|HSM803910 Homo sapiens mRNA; cDNA DKFZp451C1217 (from clone DKFZp451C1217)
          Length = 5502

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ctcacaggaggaaggggcggct 293
           ||||||||||||||||||||||
Sbjct: 347 ctcacaggaggaaggggcggct 326
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>gb|AC010424.9| Homo sapiens chromosome 5 clone CTD-2195M15, complete sequence
          Length = 192282

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 272   ctcacaggaggaaggggcggct 293
             ||||||||||||||||||||||
Sbjct: 93545 ctcacaggaggaaggggcggct 93524
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>dbj|AK057437.1| Homo sapiens cDNA FLJ32875 fis, clone TESTI2004031
          Length = 1687

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ctcacaggaggaaggggcggct 293
           ||||||||||||||||||||||
Sbjct: 325 ctcacaggaggaaggggcggct 304
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>ref|NM_130809.2| Homo sapiens hypothetical protein MGC12103 (LOC133619), mRNA
          Length = 4732

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ctcacaggaggaaggggcggct 293
           ||||||||||||||||||||||
Sbjct: 341 ctcacaggaggaaggggcggct 320
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>emb|AL832056.1|HSM803363 Homo sapiens mRNA; cDNA DKFZp313P0510 (from clone DKFZp313P0510)
          Length = 4689

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ctcacaggaggaaggggcggct 293
           ||||||||||||||||||||||
Sbjct: 351 ctcacaggaggaaggggcggct 330
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>emb|AL831963.1|HSM803269 Homo sapiens mRNA; cDNA DKFZp451D162 (from clone DKFZp451D162);
           complete cds
          Length = 4723

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ctcacaggaggaaggggcggct 293
           ||||||||||||||||||||||
Sbjct: 350 ctcacaggaggaaggggcggct 329
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>dbj|AK090486.1| Homo sapiens mRNA for FLJ00410 protein
          Length = 4515

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ctcacaggaggaaggggcggct 293
           ||||||||||||||||||||||
Sbjct: 214 ctcacaggaggaaggggcggct 193
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 203   agcagcatcacgccggcgtccgtgc 227
             ||||||||||||||| |||||||||
Sbjct: 94277 agcagcatcacgccgtcgtccgtgc 94301
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 197     agcaccagcagcatcacgccg 217
               |||||||||||||||||||||
Sbjct: 4214913 agcaccagcagcatcacgccg 4214893
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 199     caccagcagcatcacgccggc 219
               |||||||||||||||||||||
Sbjct: 1756855 caccagcagcatcacgccggc 1756875
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 201     ccagcagcatcacgccggcgt 221
               |||||||||||||||||||||
Sbjct: 2767004 ccagcagcatcacgccggcgt 2767024
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>gb|AY842481.1| Homo sapiens growth associated protein 43 (GAP43) gene, complete cds
          Length = 100848

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   aaccaaaaggaaaaatgaat 129
             ||||||||||||||||||||
Sbjct: 11075 aaccaaaaggaaaaatgaat 11056
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>gb|AE010334.1| Methanopyrus kandleri AV19 section 33 of 157 of the complete genome
          Length = 7181

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 372  ggaggccgccgcgctgggga 391
            ||||||||||||||||||||
Sbjct: 4547 ggaggccgccgcgctgggga 4528
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>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06,
             complete sequence
          Length = 142068

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   gaggcggcgtgggagggcgc 255
             ||||||||||||||||||||
Sbjct: 78914 gaggcggcgtgggagggcgc 78933
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>gb|AC183547.2| Pan troglodytes BAC clone CH251-213F19 from chromosome 6, complete
             sequence
          Length = 190731

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   aaaccaaaaggaaaaatgaa 128
             ||||||||||||||||||||
Sbjct: 53820 aaaccaaaaggaaaaatgaa 53801
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>gb|AF024498.1| Caenorhabditis elegans cosmid F40H7, complete sequence
          Length = 22795

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  caaaccaaaaggaaaaatga 127
            ||||||||||||||||||||
Sbjct: 4284 caaaccaaaaggaaaaatga 4265
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>emb|AL450324.10| Human DNA sequence from clone RP11-307F22 on chromosome 6, complete
             sequence
          Length = 101846

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   aaaccaaaaggaaaaatgaa 128
             ||||||||||||||||||||
Sbjct: 72119 aaaccaaaaggaaaaatgaa 72100
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>emb|AL354735.14| Human DNA sequence from clone RP11-738I14 on chromosome 9 Contains the 3'
              end of the DDX31 gene for DEAD/H box polypeptide 31, the
              BARHL1 gene for BarH-like 1 (Drosophila) protein, two novel
              genes and three CpG islands, complete sequence
          Length = 189821

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    gcgtgggagggcgccggacc 261
              ||||||||||||||||||||
Sbjct: 104620 gcgtgggagggcgccggacc 104639
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>emb|AL844157.5| Mouse DNA sequence from clone RP24-313C24 on chromosome 4 Contains a
             novel peudogene and a CpG island, complete sequence
          Length = 156075

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 474   tgatgagtccatccactccc 493
             ||||||||||||||||||||
Sbjct: 28028 tgatgagtccatccactccc 28047
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>gb|AC182636.3| Pan troglodytes BAC clone CH251-519F5 from chromosome 6, complete
             sequence
          Length = 197430

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   aaaccaaaaggaaaaatgaa 128
             ||||||||||||||||||||
Sbjct: 86415 aaaccaaaaggaaaaatgaa 86396
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>gb|AC182427.3| Pan troglodytes BAC clone CH251-692F19 from chromosome 6, complete
              sequence
          Length = 168190

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    aaaccaaaaggaaaaatgaa 128
              ||||||||||||||||||||
Sbjct: 158669 aaaccaaaaggaaaaatgaa 158650
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>gb|AC092468.9| Homo sapiens 3 BAC RP11-326J18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114428

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   aaccaaaaggaaaaatgaat 129
             ||||||||||||||||||||
Sbjct: 42351 aaccaaaaggaaaaatgaat 42370
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>gb|AC099501.2| Homo sapiens chromosome 5 clone RP11-20O13, complete sequence
          Length = 43953

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   cgtcttgtcccccatcttcc 428
             ||||||||||||||||||||
Sbjct: 32535 cgtcttgtcccccatcttcc 32516
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>gb|AC096915.2| Homo sapiens chromosome 3 clone RP11-24H1, complete sequence
          Length = 170162

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 330    ccattgctggtggcaatgctgctt 353
              ||||| ||||||||||||||||||
Sbjct: 108452 ccatttctggtggcaatgctgctt 108429
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 236      gaggcggcgtgggagggcgc 255
                ||||||||||||||||||||
Sbjct: 25344310 gaggcggcgtgggagggcgc 25344329
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>gb|AC099778.2| Homo sapiens chromosome 3 clone RP11-708J19, complete sequence
          Length = 212775

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 97    acttgtacagccaaaccaaaagga 120
             ||||||||||||||||| ||||||
Sbjct: 84681 acttgtacagccaaacccaaagga 84658
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>dbj|AK062293.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F01, full
            insert sequence
          Length = 2395

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 236  gaggcggcgtgggagggcgc 255
            ||||||||||||||||||||
Sbjct: 1316 gaggcggcgtgggagggcgc 1335
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>emb|AL139317.5|CNS01DXI Human chromosome 14 DNA sequence BAC R-589M4 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 190648

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     tccaccacccccaaatactt 100
              ||||||||||||||||||||
Sbjct: 133014 tccaccacccccaaatactt 133033
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>emb|AL772326.5| Mouse DNA sequence from clone RP23-267E14 on chromosome 4, complete
             sequence
          Length = 165398

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 565   agaaaggaactcgttcatca 584
             ||||||||||||||||||||
Sbjct: 48190 agaaaggaactcgttcatca 48171
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>emb|AL663067.14| Mouse DNA sequence from clone RP23-23G3 on chromosome 2, complete
            sequence
          Length = 193057

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 264  tggtgttgctcacaggagga 283
            ||||||||||||||||||||
Sbjct: 6173 tggtgttgctcacaggagga 6192
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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 547     gaagaagtcatacggctgag 566
               ||||||||||||||||||||
Sbjct: 1264773 gaagaagtcatacggctgag 1264792
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>gb|M58579.1|RABACE Rabbit angiotensin-converting enzyme (ACE-P) gene, 5' end
          Length = 583

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 274 cacaggaggaaggggcggct 293
           ||||||||||||||||||||
Sbjct: 97  cacaggaggaaggggcggct 116
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>gb|L23202.1|RABANTENIS Rabbit angiotensin-converting isozyme gene
          Length = 1232

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 274  cacaggaggaaggggcggct 293
            ||||||||||||||||||||
Sbjct: 1008 cacaggaggaaggggcggct 1027


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,921,731
Number of Sequences: 3902068
Number of extensions: 5921731
Number of successful extensions: 116913
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 116433
Number of HSP's gapped (non-prelim): 480
length of query: 646
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 623
effective length of database: 17,143,297,704
effective search space: 10680274469592
effective search space used: 10680274469592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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