ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CALX_SOYBN (Q39817) Calnexin homolog precursor 73 7e-13
2CALX_PEA (O82709) Calnexin homolog precursor 71 2e-12
3CALX2_ARATH (Q38798) Calnexin homolog 2 precursor 67 5e-11
4CALX_HELTU (Q39994) Calnexin homolog precursor 56 9e-08
5CALX1_ARATH (P29402) Calnexin homolog 1 precursor 54 4e-07
6SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precurs... 32 1.9
7KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-ass... 31 3.2
8ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1) 30 4.2

>CALX_SOYBN (Q39817) Calnexin homolog precursor|
          Length = 546

 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 39/72 (54%), Positives = 49/72 (68%)
 Frame = -3

Query: 601 AAAESEDLSEFQKKIFSVLYKNRRTFRSWNHTRSKIIDLIEKGEKQPNITISILASVAVI 422
           AA  S+ +S FQKK+F +LYK         H +SKI DLIEK EKQPN+TI IL +V V+
Sbjct: 427 AATGSDGISGFQKKVFDLLYKIADIPFLSEH-KSKIFDLIEKAEKQPNLTIGILVAVVVV 485

Query: 421 LVTVLFRTIFGG 386
            V++ FR IFGG
Sbjct: 486 FVSIFFRLIFGG 497



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>CALX_PEA (O82709) Calnexin homolog precursor|
          Length = 551

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 36/73 (49%), Positives = 50/73 (68%)
 Frame = -3

Query: 604 AAAAESEDLSEFQKKIFSVLYKNRRTFRSWNHTRSKIIDLIEKGEKQPNITISILASVAV 425
           AA +ESE ++  QKK F +LYK        +  + KII++IEKGEKQPN+TI I+ SV +
Sbjct: 431 AARSESEGIAGIQKKAFDLLYKIA-DIAFLSGQKEKIIEIIEKGEKQPNLTIGIIVSVVI 489

Query: 424 ILVTVLFRTIFGG 386
           + V++ FR IFGG
Sbjct: 490 VFVSIFFRLIFGG 502



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>CALX2_ARATH (Q38798) Calnexin homolog 2 precursor|
          Length = 532

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 34/93 (36%), Positives = 53/93 (56%)
 Frame = -3

Query: 601 AAAESEDLSEFQKKIFSVLYKNRRTFRSWNHTRSKIIDLIEKGEKQPNITISILASVAVI 422
           AA E++ L  +QKK+F +LYK        +  +SKI++LIEK E QPN+TI +L S+ ++
Sbjct: 420 AAGEADGLKSYQKKVFDLLYKVA-DISFLSAYKSKIMELIEKAETQPNLTIGVLISIVIV 478

Query: 421 LVTVLFRTIFGGXXXXXXXXXXXXXXXPSATEA 323
            +++ F+ IFGG                S +EA
Sbjct: 479 FLSLFFKLIFGGAKAKVEKKKPETAAETSTSEA 511



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>CALX_HELTU (Q39994) Calnexin homolog precursor|
          Length = 540

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 27/67 (40%), Positives = 43/67 (64%)
 Frame = -3

Query: 586 EDLSEFQKKIFSVLYKNRRTFRSWNHTRSKIIDLIEKGEKQPNITISILASVAVILVTVL 407
           + L   QK +F VLYK        +H + K+++LIEK E QPNITI ++ S+ V++ ++L
Sbjct: 426 DGLKGIQKAVFDVLYKIADLPFLGDH-KVKVLELIEKAETQPNITIGVIVSIIVVIFSIL 484

Query: 406 FRTIFGG 386
            + +FGG
Sbjct: 485 LKLLFGG 491



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>CALX1_ARATH (P29402) Calnexin homolog 1 precursor|
          Length = 530

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 27/72 (37%), Positives = 44/72 (61%)
 Frame = -3

Query: 601 AAAESEDLSEFQKKIFSVLYKNRRTFRSWNHTRSKIIDLIEKGEKQPNITISILASVAVI 422
           AA  ++ L  +QK +F +L K        +  +SKI +LIEK E+QPN+TI +L ++ V+
Sbjct: 418 AAGSADGLKSYQKVVFDLLNKVA-DLSFLSAYKSKITELIEKAEQQPNLTIGVLVAIVVV 476

Query: 421 LVTVLFRTIFGG 386
             ++  + IFGG
Sbjct: 477 FFSLFLKLIFGG 488



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>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II) (SRECRP-1)
          Length = 866

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = -2

Query: 443 FGLSCCHPCYCALQNHFRWQEGSGTCEA----RCCGEEAQCHGSRC 318
           +G  C   CYC+  +    Q G+  C A    R C  +  C+ S C
Sbjct: 177 WGAQCASACYCSATSRCDPQTGACLCHAGWWGRSCNNQCACNSSPC 222



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>KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-associated protein|
           5.6) (Ultrahigh sulfur keratin-associated protein 5.6)
          Length = 129

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 434 SCCHPCYCALQNHFRWQEGSGTCEARCC 351
           SCC PCYC+         GS  C++ CC
Sbjct: 89  SCCKPCYCSSGC------GSSCCQSSCC 110



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>ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1)|
          Length = 545

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 419 CYCALQNHFRWQEGSGTCEARCCGEEAQCHGS 324
           CY + ++H R   G   C+ + CG+   C+ S
Sbjct: 307 CYSSFRDHVRTHTGEKPCQCKHCGKAFTCYSS 338


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,613,861
Number of Sequences: 219361
Number of extensions: 1145142
Number of successful extensions: 3400
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3392
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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