| Clone Name | rbags33a22 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ495775.1|HVU495775 Hordeum vulgare mRNA for putative MAP kinase Length = 2276 Score = 880 bits (444), Expect = 0.0 Identities = 489/500 (97%), Gaps = 4/500 (0%) Strand = Plus / Minus Query: 1 gaatgttcgacagcgaaacaggnacagcgttcagatgtcttgctctgttcgttacaatca 60 |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 2201 gaatgttcaacagcgaaacagg-acagcgttcagatgtcttgctctgttcgttacaatca 2143 Query: 61 tgcatagatgatatgtgtaggaactaatcccggtgttacatctgtaatcttgagtgtaaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2142 tgcatagatgatatgtgtaggaactaatcccggtgttacatctgtaatcttgagtgtaaa 2083 Query: 121 aatacatcaacccatgcagggcaacagttcctgcgtgcagca-gcgatgcttggcaggat 179 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2082 aatacatcaacccatgcagggcaacagttcctgcgtgcagcaagcgatgcttggcaggat 2023 Query: 180 ca-cacactcgctaaacaatctccaacttgtatgc-agtgcttccctaggaccgcactgc 237 || |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 2022 caacacactcgntaaacaatctccaacttgtatgccagtgcttccctaggaccgcactgc 1963 Query: 238 tttgctatcagcatccggtgtacctgacggaaatgagaaatgcggtgccgacttccgtca 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1962 tttgctatcagcatccggtgtacctgacggaaatgagaaatgcggtgccgacttccgtca 1903 Query: 298 tcggcgctgcactaggcatgcatcttggagaccttctcggatagtccgtcgacggcccct 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1902 tcggcgctgcactaggcatgcatcttggagaccttctcggatagtccgtcgacggcccct 1843 Query: 358 tccgtttcctcagagatcgcatcgtcatactctggctgtttattcgggttgacaacgaca 417 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1842 tccgtttcctcggagatcgcatcgtcatactctggctgtttattcgggttgacaacgaca 1783 Query: 418 cacttggaagcactaatgctcgcgctcttgaggtaggtccgcgagctcaagctgntggng 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct: 1782 cacttggaagcactaatgctcgcgctcttgaggtaggtccgcgagctcaagctggtgggg 1723 Query: 478 ctcanaccattctggccaac 497 |||| ||||||||| ||||| Sbjct: 1722 ctcagaccattctgaccaac 1703
>gb|AY881102.1| Triticum aestivum putative MAPK protein kinase (MAPK1a) mRNA, complete cds Length = 2356 Score = 440 bits (222), Expect = e-120 Identities = 255/267 (95%) Strand = Plus / Minus Query: 231 gcactgctttgctatcagcatccggtgtacctgacggaaatgagaaatgcggtgccgact 290 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct: 2104 gcactgctttgctatcagcatccggtgtacctgacagaaatgagaaatgtggtgccgact 2045 Query: 291 tccgtcatcggcgctgcactaggcatgcatcttggagaccttctcggatagtccgtcgac 350 |||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2044 tccgtcgttgttgctgcactaggcatgcatcttggagaccttctcggatagtccgtcgac 1985 Query: 351 ggccccttccgtttcctcagagatcgcatcgtcatactctggctgtttattcgggttgac 410 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1984 ggccccttccgtttcctcagagatcgcgtcgtcatactctggctgtttattcgggttgac 1925 Query: 411 aacgacacacttggaagcactaatgctcgcgctcttgaggtaggtccgcgagctcaagct 470 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1924 aacgacgcacttggaagcactaatgctcgcgctcttgaggtaggtccgcgagctcaagct 1865 Query: 471 gntggngctcanaccattctggccaac 497 | | | ||||| ||||||||||||||| Sbjct: 1864 ggtagggctcagaccattctggccaac 1838 Score = 97.6 bits (49), Expect = 3e-17 Identities = 88/100 (88%), Gaps = 2/100 (2%) Strand = Plus / Minus Query: 109 cttgagtgtaaaaatacatcaacccatgcagggcaacagttcctgcgtgcagcagcgatg 168 |||||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||| | Sbjct: 2206 cttgagtgtaaaaatacatcaatccatgcagggc--cagcccctgcgtgcagcaacgacg 2149 Query: 169 cttggcaggatcacacactcgctaaacaatctccaacttg 208 |||| ||||| || |||||||||||| |||||||||||| Sbjct: 2148 cttgacaggaacatgcactcgctaaaccatctccaacttg 2109
>gb|AY881103.1| Triticum aestivum putative MAPK protein kinase (MAPK1b) mRNA, complete cds Length = 2153 Score = 404 bits (204), Expect = e-109 Identities = 243/257 (94%) Strand = Plus / Minus Query: 241 gctatcagcatccggtgtacctgacggaaatgagaaatgcggtgccgacttccgtcatcg 300 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 1889 gctatcagcatccggtgtacctgacagaaatgagaaatgcggtgccgacttccgtcgtcg 1830 Query: 301 gcgctgcactaggcatgcatcttggagaccttctcggatagtccgtcgacggccccttcc 360 ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| Sbjct: 1829 ttgctgcactaggcatgcatctttgagaccttctcggatagtccatcgacggctccttct 1770 Query: 361 gtttcctcagagatcgcatcgtcatactctggctgtttattcgggttgacaacgacacac 420 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1769 gtttcctcagagatcgcgtcgtcatactctggctgtttattcgggttgacaacgacgcac 1710 Query: 421 ttggaagcactaatgctcgcgctcttgaggtaggtccgcgagctcaagctgntggngctc 480 |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct: 1709 ttggaagcgctaatgctcgcgctcttgaggtaggtccgcgagctcaagctggtggggctc 1650 Query: 481 anaccattctggccaac 497 | ||||||||||||||| Sbjct: 1649 agaccattctggccaac 1633 Score = 149 bits (75), Expect = 1e-32 Identities = 180/212 (84%), Gaps = 16/212 (7%) Strand = Plus / Minus Query: 1 gaatgttcgacagcgaaacaggnacagcgttcagatgtcttgctctgttcgtt---acaa 57 |||| ||||||||||||||| | ||||||| ||||||||||||||||||||| |||| Sbjct: 2105 gaattttcgacagcgaaacatg-acagcgtcaagatgtcttgctctgttcgttgttacaa 2047 Query: 58 tcatgcatagatgatatgtgtaggaactaatcccggtgttacatctgtaatcttgagtgt 117 |||||||||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 2046 tcatgcatagatgataggtgtaggaactaatcccagtgttaca---------ttgagtgt 1996 Query: 118 aaaaatacatcaacccatgcagggcaacagttcctgcgtgcagcagcgatgcttggcagg 177 ||||||||||||| ||||||||||| ||| ||||| |||||||| ||| ||||| |||| Sbjct: 1995 aaaaatacatcaatccatgcagggc--cagctcctgtgtgcagcaacgacgcttgacagg 1938 Query: 178 atcacacact-cgctaaacaatctccaacttg 208 | || |||| |||||||| |||||||||||| Sbjct: 1937 aacatgcactccgctaaaccatctccaacttg 1906
>gb|DQ444321.1| Triticum aestivum mitogen-activated protein kinase (MAPK1f) mRNA, complete cds Length = 1748 Score = 321 bits (162), Expect = 1e-84 Identities = 186/195 (95%) Strand = Plus / Minus Query: 303 gctgcactaggcatgcatcttggagaccttctcggatagtccgtcgacggccccttccgt 362 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1748 gctgcactaggcatgcatcttggagaccttctcggatagtccatcgacggccccttccgt 1689 Query: 363 ttcctcagagatcgcatcgtcatactctggctgtttattcgggttgacaacgacacactt 422 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1688 ttcctcagagattgcatcgtcatactctggctgtttattcgggttgacaacgacacactt 1629 Query: 423 ggaagcactaatgctcgcgctcttgaggtaggtccgcgagctcaagctgntggngctcan 482 |||||||||||||||||||||||||||||||||||||||||| ||||| | | ||||| Sbjct: 1628 ggaagcactaatgctcgcgctcttgaggtaggtccgcgagcttaagctagttgggctcag 1569 Query: 483 accattctggccaac 497 ||||||| ||||||| Sbjct: 1568 accattcgggccaac 1554
>emb|AJ786397.2| Festuca arundinacea mRNA for mitogen-activated protein kinase 2 (mapk2 gene) Length = 1898 Score = 151 bits (76), Expect = 3e-33 Identities = 127/144 (88%) Strand = Plus / Minus Query: 303 gctgcactaggcatgcatcttggagaccttctcggatagtccgtcgacggccccttccgt 362 ||||||||||| ||||||||||||||||| ||||||||| | ||| |||| | ||||| Sbjct: 1509 gctgcactaggggtgcatcttggagaccttttcggatagttcagcgatggcctcctccgt 1450 Query: 363 ttcctcagagatcgcatcgtcatactctggctgtttattcgggttgacaacgacacactt 422 |||||||||||| | |||||||||||| | ||||||||||| ||||||||||||||| | Sbjct: 1449 ttcctcagagatttcttcgtcatactctcgttgtttattcggattgacaacgacacacct 1390 Query: 423 ggaagcactaatgctcgcgctctt 446 |||||| ||||||||||||||||| Sbjct: 1389 ggaagcgctaatgctcgcgctctt 1366 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 51 gttacaatcatgcatagatgata 73 ||||||||||||||||||||||| Sbjct: 1826 gttacaatcatgcatagatgata 1804 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 atcttgagtgtaaaaataca 126 |||||||||||||||||||| Sbjct: 1739 atcttgagtgtaaaaataca 1720
>gb|AF194415.1| Oryza sativa MAP kinase homolog (MAPK1) mRNA, complete cds Length = 2032 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 406 ttgacaacgacacacttggaagcactaatgctcgcgctcttgaggtaggtccgcgagctc 465 |||||| ||||||||||||||||||||||||| || ||||| || ||| ||| ||| ||| Sbjct: 1543 ttgacagcgacacacttggaagcactaatgcttgcactcttcagatagctcctcgaactc 1484 Query: 466 aag 468 ||| Sbjct: 1483 aag 1481
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 406 ttgacaacgacacacttggaagcactaatgctcgcgctcttgaggtaggtccgcgagctc 465 |||||| ||||||||||||||||||||||||| || ||||| || ||| ||| ||| ||| Sbjct: 29438172 ttgacagcgacacacttggaagcactaatgcttgcactcttcagatagctcctcgaactc 29438113 Query: 466 aag 468 ||| Sbjct: 29438112 aag 29438110
>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0621D05 Length = 180250 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 406 ttgacaacgacacacttggaagcactaatgctcgcgctcttgaggtaggtccgcgagctc 465 |||||| ||||||||||||||||||||||||| || ||||| || ||| ||| ||| ||| Sbjct: 149053 ttgacagcgacacacttggaagcactaatgcttgcactcttcagatagctcctcgaactc 148994 Query: 466 aag 468 ||| Sbjct: 148993 aag 148991
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0655A07 Length = 172473 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 406 ttgacaacgacacacttggaagcactaatgctcgcgctcttgaggtaggtccgcgagctc 465 |||||| ||||||||||||||||||||||||| || ||||| || ||| ||| ||| ||| Sbjct: 2678 ttgacagcgacacacttggaagcactaatgcttgcactcttcagatagctcctcgaactc 2619 Query: 466 aag 468 ||| Sbjct: 2618 aag 2616
>gb|AF177392.1|AF177392 Oryza sativa blast and wounding induced mitogen-activated protein kinase (BWMK1) mRNA, complete cds Length = 2092 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 406 ttgacaacgacacacttggaagcactaatgctcgcgctcttgaggtaggtccgcgagctc 465 |||||| ||||||||||||||||||||||||| || ||||| || ||| ||| ||| ||| Sbjct: 1439 ttgacagcgacacacttggaagcactaatgcttgcactcttcagatagctcctcgaactc 1380 Query: 466 aag 468 ||| Sbjct: 1379 aag 1377
>dbj|AK066531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K13, full insert sequence Length = 2452 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 406 ttgacaacgacacacttggaagcactaatgctcgcgctcttgaggtaggtccgcgagctc 465 |||||| ||||||||||||||||||||||||| || ||||| || ||| ||| ||| ||| Sbjct: 1893 ttgacagcgacacacttggaagcactaatgcttgcactcttcagatagctcctcgaactc 1834 Query: 466 aag 468 ||| Sbjct: 1833 aag 1831
>dbj|AK070823.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065I07, full insert sequence Length = 1044 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 406 ttgacaacgacacacttggaagcactaatgctcgcgctcttgaggtaggtccgcgagctc 465 |||||| ||||||||||||||||||||||||| || ||||| || ||| ||| ||| ||| Sbjct: 561 ttgacagcgacacacttggaagcactaatgcttgcactcttcagatagctcctcgaactc 502 Query: 466 aag 468 ||| Sbjct: 501 aag 499
>dbj|AK067925.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121F14, full insert sequence Length = 2737 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 406 ttgacaacgacacacttggaagcactaatgctcgcgctcttgaggtaggtccgcgagctc 465 |||||| ||||||||||||||||||||||||| || ||||| || ||| ||| ||| ||| Sbjct: 2123 ttgacagcgacacacttggaagcactaatgcttgcactcttcagatagctcctcgaactc 2064 Query: 466 aag 468 ||| Sbjct: 2063 aag 2061
>gb|AY112477.1| Zea mays CL9707_1 mRNA sequence Length = 993 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 407 tgacaacgacacacttggaagcactaatgctcgcgctcttgaggtaggtccgcgagctca 466 |||||||||| ||||||||||| || ||||| || ||||| |||||| |||| ||||| | Sbjct: 438 tgacaacgacgcacttggaagcgcttatgcttgcactcttcaggtagctccgagagctta 497 Query: 467 agct 470 |||| Sbjct: 498 agct 501
>ref|XM_001004331.1| PREDICTED: Mus musculus RIKEN cDNA 9130230N09 gene (9130230N09Rik), mRNA Length = 3725 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 cagcgttcagatgtcttgct 44 |||||||||||||||||||| Sbjct: 804 cagcgttcagatgtcttgct 823
>gb|AC145792.2| Xenopus tropicalis clone CH216-150M20, complete sequence Length = 44807 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 tgagtgtaaaaatacatcaa 130 |||||||||||||||||||| Sbjct: 3962 tgagtgtaaaaatacatcaa 3981
>ref|XM_974618.1| PREDICTED: Mus musculus RIKEN cDNA 9130230N09 gene (9130230N09Rik), mRNA Length = 3725 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 cagcgttcagatgtcttgct 44 |||||||||||||||||||| Sbjct: 804 cagcgttcagatgtcttgct 823
>ref|XM_986326.1| PREDICTED: Mus musculus RIKEN cDNA 9130230N09 gene (9130230N09Rik), mRNA Length = 3725 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 cagcgttcagatgtcttgct 44 |||||||||||||||||||| Sbjct: 804 cagcgttcagatgtcttgct 823
>gb|AC127545.4| Mus musculus BAC clone RP24-562H22 from chromosome 19, complete sequence Length = 146015 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 310 taggcatgcatcttggagaccttc 333 |||||||| ||||||||||||||| Sbjct: 142678 taggcatgtatcttggagaccttc 142655
>gb|AC102604.13| Mus musculus chromosome 19, clone RP23-385L22, complete sequence Length = 212387 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 taggcatgcatcttggagaccttc 333 |||||||| ||||||||||||||| Sbjct: 166507 taggcatgtatcttggagaccttc 166530
>emb|AL772364.20| Mouse DNA sequence from clone RP23-242C19 on chromosome 11 Contains a ribosomal protein S16 (Rps16) pseudogene, the B3gnt1 gene for beta-1,3-N-acetylglucosaminyltransferase 1, the Murr1 gene for U2af1-rs1 region 1, the U2af1-rs1 gene for U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 (related sequence 1) and two CpG islands, complete sequence Length = 210863 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 cagcgttcagatgtcttgct 44 |||||||||||||||||||| Sbjct: 94505 cagcgttcagatgtcttgct 94486
>dbj|AK020289.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched library, clone:9130230N09 product:unclassifiable, full insert sequence Length = 896 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 cagcgttcagatgtcttgct 44 |||||||||||||||||||| Sbjct: 96 cagcgttcagatgtcttgct 77
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 cttccgtttcctcagagatc 375 |||||||||||||||||||| Sbjct: 882127 cttccgtttcctcagagatc 882108
>ref|NM_210341.1| Eremothecium gossypii AER128Wp (AER128W), mRNA Length = 2409 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 cttccgtttcctcagagatc 375 |||||||||||||||||||| Sbjct: 1204 cttccgtttcctcagagatc 1185 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,109,980 Number of Sequences: 3902068 Number of extensions: 3109980 Number of successful extensions: 48272 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48217 Number of HSP's gapped (non-prelim): 47 length of query: 497 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 475 effective length of database: 17,147,199,772 effective search space: 8144919891700 effective search space used: 8144919891700 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)