ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags32l17 |
|---|---|
| Clone Library Name | barley_pub |
>PRP8_MOUSE (Q99PV0) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)| Length = 2335 Score = 163 bits (412), Expect = 3e-40 Identities = 71/118 (60%), Positives = 88/118 (74%) Frame = -1 Query: 556 FXXGXXXLXAXXXTPSGYEWXXGNKXNGSNPQGYLPTXYEKVQMLLSDRFLGFYMVPDNA 377 F G L A TPSGYEW N G+NP+GYLP+ YE+VQMLLSDRFLGF+MVP + Sbjct: 2218 FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQS 2277 Query: 376 PWNYNFMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEEGEVAEGDREDTFS 203 WNYNFMGV+HDP MKY ++L P++FYHE HRP+HFL F+ ++EGEV DRED ++ Sbjct: 2278 SWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335
>PRP8_HUMAN (Q6P2Q9) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)| (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220) Length = 2335 Score = 163 bits (412), Expect = 3e-40 Identities = 71/118 (60%), Positives = 88/118 (74%) Frame = -1 Query: 556 FXXGXXXLXAXXXTPSGYEWXXGNKXNGSNPQGYLPTXYEKVQMLLSDRFLGFYMVPDNA 377 F G L A TPSGYEW N G+NP+GYLP+ YE+VQMLLSDRFLGF+MVP + Sbjct: 2218 FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQS 2277 Query: 376 PWNYNFMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEEGEVAEGDREDTFS 203 WNYNFMGV+HDP MKY ++L P++FYHE HRP+HFL F+ ++EGEV DRED ++ Sbjct: 2278 SWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335
>PRP8_CAEEL (P34369) Pre-mRNA-splicing factor 8 homolog| Length = 2329 Score = 142 bits (357), Expect = 8e-34 Identities = 63/119 (52%), Positives = 77/119 (64%), Gaps = 1/119 (0%) Frame = -1 Query: 556 FXXGXXXLXAXXXTPSGYEWXXGNKXNGSNPQGYLPTXYEKVQMLLSDRFLGFYMVPDNA 377 F G L A TPSGYEW N G+NP+GY+PT YEKVQMLLSDRFLG++MVP N Sbjct: 2211 FTPGSVSLTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNG 2270 Query: 376 PWNYNFMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEEG-EVAEGDREDTFS 203 WNYNF G + P MK+ + L P+++YHEDHRP HF F ++ DRED F+ Sbjct: 2271 VWNYNFQGQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLGTGSADREDAFA 2329
>PRP8_YEAST (P33334) Pre-mRNA-splicing factor 8| Length = 2413 Score = 91.7 bits (226), Expect = 1e-18 Identities = 46/116 (39%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Frame = -1 Query: 547 GXXXLXAXXXTPSGYEWXXGNKX-NGSNPQGYLPTXYEKVQMLLSDRFLGFYMVPDNAPW 371 G L A T GY+W NK +G+ PT Q+LLSDR G +++P W Sbjct: 2298 GSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVW 2357 Query: 370 NYNFMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEEGEVAEGDREDTFS 203 NY FMG + Y+ K G P +FY+E HRP HFL+FS + E E ++ D FS Sbjct: 2358 NYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFSELAGDEELEAEQIDVFS 2413
>ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein| Length = 1049 Score = 33.5 bits (75), Expect = 0.42 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 18/83 (21%) Frame = -3 Query: 467 PTRLSSNSXREGPDASQRPLPWILHGSGQRSVE---LQLHGSQARPA------------- 336 P + S+S + P A+++P P L+ + +S QLHG Q +PA Sbjct: 835 PQAIVSSSTPQYP-AAEQPTPQALYATVHQSYPHHATQLHGHQPQPATTPTGSQPQSQHA 893 Query: 335 --DEVQHEAGHTPRLLPRGPQAN 273 VQH+AG P L PQ N Sbjct: 894 APSPVQHQAGQAPHLGSGQPQQN 916
>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)| (Ataxin-2-related protein) Length = 1075 Score = 31.6 bits (70), Expect = 1.6 Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 18/83 (21%) Frame = -3 Query: 467 PTRLSSNSXREGPDASQRPLPWILHGSGQRSVE---LQLHGSQARPA------------- 336 P + S+S + P A Q P P L+ + +S QLH Q +PA Sbjct: 831 PQAIVSSSTPQYPSAEQ-PTPQALYATVHQSYPHHATQLHAHQPQPATTPTGSQPQSQHA 889 Query: 335 --DEVQHEAGHTPRLLPRGPQAN 273 VQH+AG P L PQ N Sbjct: 890 APSPVQHQAGQAPHLGSGQPQQN 912
>NEU4_CATCO (P16229) Vasotocin-neurophysin VT 2 precursor [Contains: Vasotocin| (VT); Neurophysin VT 2] Length = 155 Score = 30.8 bits (68), Expect = 2.7 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 4/76 (5%) Frame = +1 Query: 274 LACGPRGRSRGVCPASCCTSSAG---RA*LP*SCSSTERCPEPCRIQGSGR*EASGPSRX 444 LACGP + R + P+ CC G + C E P PC+ G +GP Sbjct: 43 LACGPGDKGRCLGPSICCGEEIGCLVGSPWMARCQEEEYLPSPCQTAGKLCGSDAGPCAA 102 Query: 445 E-LEDNLVGCSRXPCC 489 + GC P C Sbjct: 103 PGVCCGTEGCKLDPNC 118
>EX7L_CHLTR (O84333) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 516 Score = 30.0 bits (66), Expect = 4.6 Identities = 13/46 (28%), Positives = 28/46 (60%) Frame = +3 Query: 9 LYSTVLEGQAYNTRY*SQETENIIQHVTSKLHTSQSSLFKTEQSSL 146 LY++ L+ + N ++ +Q + NI+ ++ +LH + +S +T Q L Sbjct: 381 LYTSCLKNELLNLQHHTQHSRNILSQLSRRLHIAIASSQQTHQECL 426
>PERQ1_HUMAN (O75420) PERQ amino acid rich with GYF domain protein 1| Length = 817 Score = 29.6 bits (65), Expect = 6.0 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 7/71 (9%) Frame = -3 Query: 488 QQGQREQPTRLSSNSXREG-------PDASQRPLPWILHGSGQRSVELQLHGSQARPADE 330 Q+ + E RL + R+G PD R W HG +R E L G + +E Sbjct: 115 QEEEEEGSWRLGAGPRRDGDRWRSASPDGGPRSAGWREHGERRRKFEFDLRGDRGGCGEE 174 Query: 329 VQHEAGHTPRL 297 G + L Sbjct: 175 EGRGGGGSSHL 185
>SEM3E_MOUSE (P70275) Semaphorin-3E precursor (Semaphorin H) (Sema H)| Length = 775 Score = 29.6 bits (65), Expect = 6.0 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = -1 Query: 460 GYLPTXYEKVQMLLSDRFLGFYMVPDNAPWNYNFM 356 G++ T ++ ++L +F+G YM+PDN + N M Sbjct: 210 GHIRTEHDDERLLKEPKFVGSYMIPDNEDRDDNKM 244 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,275,758 Number of Sequences: 219361 Number of extensions: 1138824 Number of successful extensions: 3265 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3078 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3255 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
