ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags33a14 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X07851.1|TARSBA Wheat mRNA for Rubisco subunit binding-protein alpha subunit Length = 1834 Score = 906 bits (457), Expect = 0.0 Identities = 589/628 (93%), Gaps = 15/628 (2%) Strand = Plus / Minus Query: 1 tacctttcgattcgcaaaaatggcaatcctactct------agacctttttcactttcaa 54 |||| |||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 1780 taccgttcgattcgcaaaaatggcaatcctactcttactctagaccttt--cactttcag 1723 Query: 55 ttgatgctcaaccaaaattctactgcttggcctgaactgaagcatctaaaaaacacggac 114 ||||| ||||||| |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 1722 ttgat-ctcaaccgaaattctactgcttggcctgaactgaggcatctaaaaaa-acggag 1665 Query: 115 gaggcctgaagag--ctttacag---gctcgatcagacggagagctgcccctccgctggc 169 ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1664 gaggcctgaagagagctttacatacagctcgatcagacggagagctgcccctccgctggc 1605 Query: 170 tccgcgaccttagccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggacc 229 || |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1604 tcggcgaccttgggcttgggcttgggcttctcgacgacgatcgcttgcgtggtgaggacc 1545 Query: 230 attccggacaccgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatg 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1544 attccggacaccgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatg 1485 Query: 290 acacccgactcgatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccac 349 || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 1484 acgcccgactcgatcaggttctcgtacttgtcggtcattgcgttgtaacccatctcccac 1425 Query: 350 tcgctatccttgatcttctcgatcacaacttccccttccactccagcgttgttggcgatc 409 ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 1424 tcgctctccttgatcttctcgatcacaacctccccttccactccggcgttgttggcgatc 1365 Query: 410 agcgatgccggtgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtgg 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1364 agcgatgccggtgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtgg 1305 Query: 470 tcttcaattgtttctttgatcgcagggacataggtagataggtgcacatatgccgcacca 529 ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct: 1304 tcttcgattgtttctttgatcgcagggacataggtagacaggtgcacatacgccgcgcca 1245 Query: 530 ccaccgggaacaatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcctcgatc 589 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 1244 ccaccgggaacaatgccctcctcgatggctgcgaaagtggcattcttcgcgtcctcgatc 1185 Query: 590 cgcagctgacggtcctcgagctctgtct 617 || ||||||||||| ||||||||||||| Sbjct: 1184 cgaagctgacggtcttcgagctctgtct 1157
>emb|AJ234407.1|HVU234407 Hordeum vulgare partial mRNA; clone cMWG0655 Length = 247 Score = 343 bits (173), Expect = 4e-91 Identities = 186/195 (95%) Strand = Plus / Plus Query: 423 cttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgttt 482 |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 1 cttgcaatgccttctgaatgatgtcagcaccaagnvgctcgbcgtggtcttcaattgttt 60 Query: 483 ctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaacaa 542 ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ctttgatcgmaggaacataggtagataggtgcacatatgccgcaccaccaccgggaacaa 120 Query: 543 tgccctcctcgatggcagcgaaagtggcgttcttcgcgtcctcgatccgcagctgacggt 602 ||||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||| Sbjct: 121 tgccctcctcgatggcagcgaaagtggngttcttcscgkcctcgatcsgcagctgacggt 180 Query: 603 cctcgagctctgtct 617 ||||||||||||||| Sbjct: 181 cctcgagctctgtct 195
>dbj|AK120503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122K17, full insert sequence Length = 2070 Score = 295 bits (149), Expect = 9e-77 Identities = 365/437 (83%) Strand = Plus / Minus Query: 181 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 240 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1785 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1726 Query: 241 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 300 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 1725 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 1666 Query: 301 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 360 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 1665 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 1606 Query: 361 gatcttctcgatcacaacttccccttccactccagcgttgttggcgatcagcgatgccgg 420 ||||||||| | || |||||||||||||||||||| |||| ||| ||||| || || || Sbjct: 1605 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcagtgaagcggg 1546 Query: 421 tgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgt 480 ||| ||| ||||| ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct: 1545 agctaccaacgccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgt 1486 Query: 481 ttctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaac 540 |||||||||||||||||| || || || |||||||| || | |||||| || ||||| Sbjct: 1485 ttctttgatcgcagggacggtagttgaaagatgcacatacgctgtaccacctccaggaac 1426 Query: 541 aatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcctcgatccgcagctgacg 600 |||||||||||| || || |||||||| || |||||||| |||||||| || || || || Sbjct: 1425 aatgccctcctcaatagctgcgaaagttgcattcttcgcatcctcgatacgtagttggcg 1366 Query: 601 gtcctcgagctctgtct 617 |||||| ||||| |||| Sbjct: 1365 gtcctcaagctcagtct 1349
>dbj|AK119223.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D06, full insert sequence Length = 1119 Score = 295 bits (149), Expect = 9e-77 Identities = 365/437 (83%) Strand = Plus / Minus Query: 181 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 240 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 854 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 795 Query: 241 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 300 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 794 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 735 Query: 301 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 360 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 734 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 675 Query: 361 gatcttctcgatcacaacttccccttccactccagcgttgttggcgatcagcgatgccgg 420 ||||||||| | || |||||||||||||||||||| |||| ||| ||||| || || || Sbjct: 674 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcagtgaagcggg 615 Query: 421 tgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgt 480 ||| ||| ||||| ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct: 614 agctaccaacgccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgt 555 Query: 481 ttctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaac 540 |||||||||||||||||| || || || |||||||| || | |||||| || ||||| Sbjct: 554 ttctttgatcgcagggacggtagttgaaagatgcacatacgctgtaccacctccaggaac 495 Query: 541 aatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcctcgatccgcagctgacg 600 |||||||||||| || || |||||||| || |||||||| |||||||| || || || || Sbjct: 494 aatgccctcctcaatagctgcgaaagttgcattcttcgcatcctcgatacgtagttggcg 435 Query: 601 gtcctcgagctctgtct 617 |||||| ||||| |||| Sbjct: 434 gtcctcaagctcagtct 418
>dbj|AK100602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107D12, full insert sequence Length = 1985 Score = 295 bits (149), Expect = 9e-77 Identities = 365/437 (83%) Strand = Plus / Minus Query: 181 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 240 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1783 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1724 Query: 241 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 300 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 1723 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 1664 Query: 301 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 360 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 1663 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 1604 Query: 361 gatcttctcgatcacaacttccccttccactccagcgttgttggcgatcagcgatgccgg 420 ||||||||| | || |||||||||||||||||||| |||| ||| ||||| || || || Sbjct: 1603 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcagtgaagcggg 1544 Query: 421 tgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgt 480 ||| ||| ||||| ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct: 1543 agctaccaacgccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgt 1484 Query: 481 ttctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaac 540 |||||||||||||||||| || || || |||||||| || | |||||| || ||||| Sbjct: 1483 ttctttgatcgcagggacggtagttgaaagatgcacatacgctgtaccacctccaggaac 1424 Query: 541 aatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcctcgatccgcagctgacg 600 |||||||||||| || || |||||||| || |||||||| |||||||| || || || || Sbjct: 1423 aatgccctcctcaatagctgcgaaagttgcattcttcgcatcctcgatacgtagttggcg 1364 Query: 601 gtcctcgagctctgtct 617 |||||| ||||| |||| Sbjct: 1363 gtcctcaagctcagtct 1347
>dbj|AK061410.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-B08, full insert sequence Length = 1087 Score = 295 bits (149), Expect = 9e-77 Identities = 365/437 (83%) Strand = Plus / Minus Query: 181 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 240 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 802 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 743 Query: 241 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 300 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 742 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 683 Query: 301 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 360 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 682 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 623 Query: 361 gatcttctcgatcacaacttccccttccactccagcgttgttggcgatcagcgatgccgg 420 ||||||||| | || |||||||||||||||||||| |||| ||| ||||| || || || Sbjct: 622 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcagtgaagcggg 563 Query: 421 tgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgt 480 ||| ||| ||||| ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct: 562 agctaccaacgccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgt 503 Query: 481 ttctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaac 540 |||||||||||||||||| || || || |||||||| || | |||||| || ||||| Sbjct: 502 ttctttgatcgcagggacggtagttgaaagatgcacatacgctgtaccacctccaggaac 443 Query: 541 aatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcctcgatccgcagctgacg 600 |||||||||||| || || |||||||| || |||||||| |||||||| || || || || Sbjct: 442 aatgccctcctcaatagctgcgaaagttgcattcttcgcatcctcgatacgtagttggcg 383 Query: 601 gtcctcgagctctgtct 617 |||||| ||||| |||| Sbjct: 382 gtcctcaagctcagtct 366
>dbj|AK119217.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E10, full insert sequence Length = 1543 Score = 287 bits (145), Expect = 2e-74 Identities = 364/437 (83%) Strand = Plus / Minus Query: 181 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 240 |||||| | ||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1312 agccttggacttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1253 Query: 241 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 300 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 1252 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 1193 Query: 301 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 360 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 1192 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 1133 Query: 361 gatcttctcgatcacaacttccccttccactccagcgttgttggcgatcagcgatgccgg 420 ||||||||| | || |||||||||||||||||||| |||| ||| ||||| || || || Sbjct: 1132 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcagtgaagcggg 1073 Query: 421 tgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgt 480 ||| ||| ||||| ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct: 1072 agctaccaacgccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgt 1013 Query: 481 ttctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaac 540 |||||||||||||||||| || || || |||||||| || | |||||| || ||||| Sbjct: 1012 ttctttgatcgcagggacggtagttgaaagatgcacatacgctgtaccacctccaggaac 953 Query: 541 aatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcctcgatccgcagctgacg 600 |||||||||||| || || |||||||| || |||||||| |||||||| || || || || Sbjct: 952 aatgccctcctcaatagctgcgaaagttgcattcttcgcatcctcgatacgtagttggcg 893 Query: 601 gtcctcgagctctgtct 617 |||||| ||||| |||| Sbjct: 892 gtcctcaagctcagtct 876
>gb|BT024101.1| Zea mays clone EL01N0524E01 mRNA sequence Length = 2106 Score = 258 bits (130), Expect = 2e-65 Identities = 344/414 (83%), Gaps = 1/414 (0%) Strand = Plus / Minus Query: 158 ccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacgatcgcttgc 217 ||||||| |||||| || || | || ||||||||| |||||||| || || || || ||| Sbjct: 1812 ccctccggtggctctgccacttgaggcttcggctttggcttctcaacaacaatggcctgc 1753 Query: 218 gtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcgtcaccttg 277 ||||| ||||||||||| | || ||||| || ||||||||||| || || ||||||||| Sbjct: 1752 gtggttaggaccattccagctactgaggccgcattctggagcgcacacctggtcaccttg 1693 Query: 278 gcggggtcgatgacacccgactcgatcaggttctcgtacttgtctgtcatcgcgttgtaa 337 || |||||||| ||||| | ||| |||||||||||||||||||| ||||| || ||||| Sbjct: 1692 gcagggtcgatcacaccagcctccatcaggttctcgtacttgtcagtcattgcattgtag 1633 Query: 338 cccatctcccactcgctatccttgatcttctcgatcacaacttc-cccttccactccagc 396 |||| |||||| ||||| |||||||||||||||| || ||||| |||||| |||||||| Sbjct: 1632 cccacctcccaatcgctctccttgatcttctcgacaaccacttcacccttctactccagc 1573 Query: 397 gttgttggcgatcagcgatgccggtgcttgcaatgccttctgaatgatgtcagcaccaag 456 |||| || |||| || || |||||| ||||||||| ||||| || ||||| ||||| Sbjct: 1572 attgtgtgcaatcaatgaagcaggtgctaccaatgccttttgaataatatcagcgccaag 1513 Query: 457 gcgctcgtcgtggtcttcaattgtttctttgatcgcagggacataggtagataggtgcac 516 ||||| || |||| ||||||| |||||||||| ||||||| |||||||||||||| Sbjct: 1512 acgctcatcagggtcctcaattgcttctttgatcttagggacaaccgtagataggtgcac 1453 Query: 517 atatgccgcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtggc 570 ||||||||||||||| || ||||||||||||||||| || || || |||||||| Sbjct: 1452 atatgccgcaccacctcctggaacaatgccctcctctatagctgcaaaagtggc 1399
>gb|AY108518.1| Zea mays PCO123570 mRNA sequence Length = 1387 Score = 248 bits (125), Expect = 2e-62 Identities = 378/461 (81%), Gaps = 1/461 (0%) Strand = Plus / Minus Query: 158 ccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacgatcgcttgc 217 ||||||| |||||| || || | || ||||||||| |||||||| || || || || ||| Sbjct: 1071 ccctccggtggctctgccacttgaggcttcggctttggcttctcaacaacaatggcctgc 1012 Query: 218 gtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcgtcaccttg 277 ||||| ||||||||||| | || ||||| || ||||||||||| || || ||||||||| Sbjct: 1011 gtggttaggaccattccagctactgaggccgcattctggagcgcacacctggtcaccttg 952 Query: 278 gcggggtcgatgacacccgactcgatcaggttctcgtacttgtctgtcatcgcgttgtaa 337 || |||||||| ||||| | ||| |||||||||||||||||||| ||||| || ||||| Sbjct: 951 gcagggtcgatcacaccagcctccatcaggttctcgtacttgtcagtcattgcattgtag 892 Query: 338 cccatctcccactcgctat-ccttgatcttctcgatcacaacttccccttccactccagc 396 |||| |||||| ||||| | ||||||||||||||| || ||||| || || |||||||| Sbjct: 891 cccacctcccaatcgctctgccttgatcttctcgacaaccacttcaccctctactccagc 832 Query: 397 gttgttggcgatcagcgatgccggtgcttgcaatgccttctgaatgatgtcagcaccaag 456 |||| || |||| || || |||||| ||||||||| ||||| || ||||| ||||| Sbjct: 831 attgtgtgcaatcaatgaagcaggtgctaccaatgccttttgaataatatcagcgccaag 772 Query: 457 gcgctcgtcgtggtcttcaattgtttctttgatcgcagggacataggtagataggtgcac 516 ||||| || |||| ||||||| |||||||||| ||||||| |||||||||||||| Sbjct: 771 ccgctcatcagggtcctcaattgcttctttgatcttagggacaaccgtagataggtgcac 712 Query: 517 atatgccgcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtggcgttctt 576 ||||||||||||||| || ||||||||||||||||| || || || |||||||| || || Sbjct: 711 atatgccgcaccacctcctggaacaatgccctcctctatagctgcaaaagtggcattttt 652 Query: 577 cgcgtcctcgatccgcagctgacggtcctcgagctctgtct 617 || ||||| || | ||||| |||||||| ||||| |||| Sbjct: 651 tgcatcctcaattcttagctgccggtcctcaagctcagtct 611
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 180 bits (91), Expect = 4e-42 Identities = 196/231 (84%) Strand = Plus / Minus Query: 181 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 240 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 10296639 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 10296580 Query: 241 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 300 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 10296579 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 10296520 Query: 301 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 360 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 10296519 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 10296460 Query: 361 gatcttctcgatcacaacttccccttccactccagcgttgttggcgatcag 411 ||||||||| | || |||||||||||||||||||| |||| ||| ||||| Sbjct: 10296459 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcag 10296409 Score = 131 bits (66), Expect = 3e-27 Identities = 156/186 (83%) Strand = Plus / Minus Query: 432 ccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgtttctttgatcg 491 |||| ||||| ||||| |||||||||||||| || |||||||| |||||||||||||||| Sbjct: 10296118 ccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgtttctttgatcg 10296059 Query: 492 cagggacataggtagataggtgcacatatgccgcaccaccaccgggaacaatgccctcct 551 ||||||| || || || |||||||| || | |||||| || |||||||||||||||| Sbjct: 10296058 cagggacggtagttgaaagatgcacatacgctgtaccacctccaggaacaatgccctcct 10295999 Query: 552 cgatggcagcgaaagtggcgttcttcgcgtcctcgatccgcagctgacggtcctcgagct 611 | || || |||||||| || |||||||| |||||||| || || || |||||||| |||| Sbjct: 10295998 caatagctgcgaaagttgcattcttcgcatcctcgatacgtagttggcggtcctcaagct 10295939 Query: 612 ctgtct 617 | |||| Sbjct: 10295938 cagtct 10295933
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 180 bits (91), Expect = 4e-42 Identities = 196/231 (84%) Strand = Plus / Minus Query: 181 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 240 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 10296521 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 10296462 Query: 241 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 300 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 10296461 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 10296402 Query: 301 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 360 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 10296401 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 10296342 Query: 361 gatcttctcgatcacaacttccccttccactccagcgttgttggcgatcag 411 ||||||||| | || |||||||||||||||||||| |||| ||| ||||| Sbjct: 10296341 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcag 10296291 Score = 131 bits (66), Expect = 3e-27 Identities = 156/186 (83%) Strand = Plus / Minus Query: 432 ccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgtttctttgatcg 491 |||| ||||| ||||| |||||||||||||| || |||||||| |||||||||||||||| Sbjct: 10296000 ccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgtttctttgatcg 10295941 Query: 492 cagggacataggtagataggtgcacatatgccgcaccaccaccgggaacaatgccctcct 551 ||||||| || || || |||||||| || | |||||| || |||||||||||||||| Sbjct: 10295940 cagggacggtagttgaaagatgcacatacgctgtaccacctccaggaacaatgccctcct 10295881 Query: 552 cgatggcagcgaaagtggcgttcttcgcgtcctcgatccgcagctgacggtcctcgagct 611 | || || |||||||| || |||||||| |||||||| || || || |||||||| |||| Sbjct: 10295880 caatagctgcgaaagttgcattcttcgcatcctcgatacgtagttggcggtcctcaagct 10295821 Query: 612 ctgtct 617 | |||| Sbjct: 10295820 cagtct 10295815
>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135439 Score = 180 bits (91), Expect = 4e-42 Identities = 196/231 (84%) Strand = Plus / Minus Query: 181 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 240 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 59558 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 59499 Query: 241 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 300 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 59498 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 59439 Query: 301 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 360 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 59438 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 59379 Query: 361 gatcttctcgatcacaacttccccttccactccagcgttgttggcgatcag 411 ||||||||| | || |||||||||||||||||||| |||| ||| ||||| Sbjct: 59378 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcag 59328 Score = 131 bits (66), Expect = 3e-27 Identities = 156/186 (83%) Strand = Plus / Minus Query: 432 ccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgtttctttgatcg 491 |||| ||||| ||||| |||||||||||||| || |||||||| |||||||||||||||| Sbjct: 59037 ccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgtttctttgatcg 58978 Query: 492 cagggacataggtagataggtgcacatatgccgcaccaccaccgggaacaatgccctcct 551 ||||||| || || || |||||||| || | |||||| || |||||||||||||||| Sbjct: 58977 cagggacggtagttgaaagatgcacatacgctgtaccacctccaggaacaatgccctcct 58918 Query: 552 cgatggcagcgaaagtggcgttcttcgcgtcctcgatccgcagctgacggtcctcgagct 611 | || || |||||||| || |||||||| |||||||| || || || |||||||| |||| Sbjct: 58917 caatagctgcgaaagttgcattcttcgcatcctcgatacgtagttggcggtcctcaagct 58858 Query: 612 ctgtct 617 | |||| Sbjct: 58857 cagtct 58852
>gb|AY108560.1| Zea mays PCO140434 mRNA sequence Length = 2143 Score = 129 bits (65), Expect = 1e-26 Identities = 335/425 (78%) Strand = Plus / Minus Query: 190 cttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggc 249 |||||||||||| || ||||| ||||| || || || |||||||| | ||| ||||| || Sbjct: 1849 cttgggcttctccacaacgattgcttgggtagtcagcaccattccagccacggaggcagc 1790 Query: 250 gttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggtt 309 |||||| || ||||| || ||||| ||||| |||||||| ||||| | ||| | |||||| Sbjct: 1789 gttctgcagggcgcacctagtcactttggcagggtcgatcacaccagcctccaccaggtt 1730 Query: 310 ctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctc 369 ||||| |||||| | ||| ||||||||||| | |||||||||||| ||| ||| || || Sbjct: 1729 ctcgtgcttgtccgccatggcgttgtaaccgaactcccactcgctttcccggattttatc 1670 Query: 370 gatcacaacttccccttccactccagcgttgttggcgatcagcgatgccggtgcttgcaa 429 | | || || |||||||| ||||| || | ||| ||||||| ||| ||||| ||| Sbjct: 1669 cacaatcacctcaccttccaccccagcattatgggctatcagcgctgcaggtgccaccaa 1610 Query: 430 tgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgtttctttgat 489 |||||||||||||| |||||||| |||||||| || | || || | || || ||||| Sbjct: 1609 agccttctgaatgatatcagcacctaggcgctcctcaggatcatccaacgtctccttgat 1550 Query: 490 cgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaacaatgccctc 549 || || || | || ||||| || |||||||| ||||| || || |||||||| || || Sbjct: 1549 agccggtacgaatgtcgatagatgaacatatgctgcaccgcctcctggaacaataccttc 1490 Query: 550 ctcgatggcagcgaaagtggcgttcttcgcgtcctcgatccgcagctgacggtcctcgag 609 ||| || || || ||||| || |||||||||||||| || || |||| |||||||| || Sbjct: 1489 ctctattgctgcaaaagtcgcattcttcgcgtcctctatgcggagcttgcggtcctctag 1430 Query: 610 ctctg 614 ||||| Sbjct: 1429 ctctg 1425
>ref|XM_470503.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1998 Score = 81.8 bits (41), Expect = 2e-12 Identities = 212/269 (78%) Strand = Plus / Minus Query: 194 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 253 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 1777 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 1718 Query: 254 tggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggttctcg 313 || | ||| ||||| |||||||| || ||||| || ||||| | || | || ||||||| Sbjct: 1717 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 1658 Query: 314 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 373 | |||| | |||||| ||||| || | |||||| || || ||||||||||| || | Sbjct: 1657 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatcttttctaca 1598 Query: 374 acaacttccccttccactccagcgttgttggcgatcagcgatgccggtgcttgcaatgcc 433 | ||||||||||| |||||||| |||| || || || | ||||||||| | ||| Sbjct: 1597 atcacttccccttcaactccagcattgtgtgctattagtgctgccggtgccactagagcc 1538 Query: 434 ttctgaatgatgtcagcaccaaggcgctc 462 || |||||||| ||||||||||||||||| Sbjct: 1537 ttttgaatgatatcagcaccaaggcgctc 1509 Score = 42.1 bits (21), Expect = 2.1 Identities = 87/109 (79%) Strand = Plus / Minus Query: 509 aggtgcacatatgccgcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtg 568 ||||| ||||| ||||||||||| || || || || || ||||| || ||||| || || Sbjct: 1462 aggtgaacataggccgcaccacctccaggtactataccttcctcaatagcagcaaatgtt 1403 Query: 569 gcgttcttcgcgtcctcgatccgcagctgacggtcctcgagctctgtct 617 || ||||| || |||||||| || |||| || ||||| |||||||||| Sbjct: 1402 gcattcttggcatcctcgatacgaagcttgcgatcctcaagctctgtct 1354
>dbj|AK061901.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H05, full insert sequence Length = 1107 Score = 81.8 bits (41), Expect = 2e-12 Identities = 212/269 (78%) Strand = Plus / Minus Query: 194 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 253 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 886 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 827 Query: 254 tggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggttctcg 313 || | ||| ||||| |||||||| || ||||| || ||||| | || | || ||||||| Sbjct: 826 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 767 Query: 314 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 373 | |||| | |||||| ||||| || | |||||| || || ||||||||||| || | Sbjct: 766 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatcttttctaca 707 Query: 374 acaacttccccttccactccagcgttgttggcgatcagcgatgccggtgcttgcaatgcc 433 | ||||||||||| |||||||| |||| || || || | ||||||||| | ||| Sbjct: 706 atcacttccccttcaactccagcattgtgtgctattagtgctgccggtgccactagagcc 647 Query: 434 ttctgaatgatgtcagcaccaaggcgctc 462 || |||||||| ||||||||||||||||| Sbjct: 646 ttttgaatgatatcagcaccaaggcgctc 618 Score = 42.1 bits (21), Expect = 2.1 Identities = 87/109 (79%) Strand = Plus / Minus Query: 509 aggtgcacatatgccgcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtg 568 ||||| ||||| ||||||||||| || || || || || ||||| || ||||| || || Sbjct: 571 aggtgaacataggccgcaccacctccaggtactataccttcctcaatagcagcaaatgtt 512 Query: 569 gcgttcttcgcgtcctcgatccgcagctgacggtcctcgagctctgtct 617 || ||||| || |||||||| || |||| || ||||| |||||||||| Sbjct: 511 gcattcttggcatcctcgatacgaagcttgcgatcctcaagctctgtct 463
>gb|BT014158.1| Lycopersicon esculentum clone 133278F, mRNA sequence Length = 2098 Score = 79.8 bits (40), Expect = 1e-11 Identities = 211/268 (78%) Strand = Plus / Minus Query: 183 ccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccg 242 |||| ||||| ||||||||||| || || ||||| ||||| || |||||||| || || | Sbjct: 1795 ccttaggctttggcttctcgaccactatggcttgtgtggtcagcaccattcctgaaactg 1736 Query: 243 aggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcga 302 | || | ||||| | || ||||| ||||||||||| || |||||||| || | || | Sbjct: 1735 atgctgaattctgcaaggcacatcttgtcaccttggctggatcgatgactccagcttcca 1676 Query: 303 tcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttga 362 || |||||||| | ||||||||||||||| |||||||||||||| ||| ||||| | Sbjct: 1675 cgagattctcgtattggtctgtcatcgcgttataacccatctcccattcggcttccttca 1616 Query: 363 tcttctcgatcacaacttccccttccactccagcgttgttggcgatcagcgatgccggtg 422 |||||| | || ||||| ||||| ||||| || || | ||| |||| ||||| || | Sbjct: 1615 ccttctccacgactacttctccttcaactccggcattttgggctatcaaagatgctgggg 1556 Query: 423 cttgcaatgccttctgaatgatgtcagc 450 || ||||||||| |||||||||||||| Sbjct: 1555 ctaccaatgccttttgaatgatgtcagc 1528
>emb|Z27222.1|BNPLCAS B.napus mRNA for plastid chaperonin-60 alpha subunit Length = 1975 Score = 77.8 bits (39), Expect = 4e-11 Identities = 78/91 (85%) Strand = Plus / Minus Query: 527 ccaccaccgggaacaatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcctcg 586 |||||||||||||| || || |||||||| |||||||| || |||||||| || ||||| Sbjct: 1426 ccaccaccgggaactattccttcctcgatagcagcgaacgttgcgttctttgcatcctca 1367 Query: 587 atccgcagctgacggtcctcgagctctgtct 617 || || |||| ||||||||||||||| |||| Sbjct: 1366 atacgaagcttacggtcctcgagctcggtct 1336 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Minus Query: 362 atcttctcgatcacaacttccccttccactccagcgtt 399 |||||||| | ||||||||||||||| | ||||||||| Sbjct: 1588 atcttctccaccacaacttccccttcgattccagcgtt 1551
>ref|NM_128359.3| Arabidopsis thaliana CPN60A; ATP binding / protein binding AT2G28000 (CPN60A) mRNA, complete cds Length = 2103 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 524 gcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcc 583 ||||||||||| ||||| ||||| |||||||| ||||| || || |||||||| || ||| Sbjct: 1519 gcaccaccacctggaactatgccttcctcgatagcagcaaatgttgcgttctttgcatcc 1460 Query: 584 tcgatccgcagctgacggtcctcgagctc 612 ||||| || |||| ||||||||| ||||| Sbjct: 1459 tcgatacgaagcttacggtcctcaagctc 1431
>gb|BT008784.1| Arabidopsis thaliana At2g28000 gene, complete cds Length = 1761 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 524 gcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcc 583 ||||||||||| ||||| ||||| |||||||| ||||| || || |||||||| || ||| Sbjct: 1382 gcaccaccacctggaactatgccttcctcgatagcagcaaatgttgcgttctttgcatcc 1323 Query: 584 tcgatccgcagctgacggtcctcgagctc 612 ||||| || |||| ||||||||| ||||| Sbjct: 1322 tcgatacgaagcttacggtcctcaagctc 1294
>gb|AC006929.4| Arabidopsis thaliana chromosome 2 clone T1E2 map mi54, complete sequence Length = 94884 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 524 gcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcc 583 ||||||||||| ||||| ||||| |||||||| ||||| || || |||||||| || ||| Sbjct: 32299 gcaccaccacctggaactatgccttcctcgatagcagcaaatgttgcgttctttgcatcc 32358 Query: 584 tcgatccgcagctgacggtcctcgagctc 612 ||||| || |||| ||||||||| ||||| Sbjct: 32359 tcgatacgaagcttacggtcctcaagctc 32387
>dbj|AK222126.1| Arabidopsis thaliana mRNA for putative rubisco subunit binding-protein alpha subunit, partial cds, clone: RAFL22-94-G01 Length = 1181 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 524 gcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcc 583 ||||||||||| ||||| ||||| |||||||| ||||| || || |||||||| || ||| Sbjct: 623 gcaccaccacctggaactatgccttcctcgatagcagcaaatgttgcgttctttgcatcc 564 Query: 584 tcgatccgcagctgacggtcctcgagctc 612 ||||| || |||| ||||||||| ||||| Sbjct: 563 tcgatacgaagcttacggtcctcaagctc 535
>dbj|AK222099.1| Arabidopsis thaliana mRNA for putative rubisco subunit binding-protein alpha subunit, partial cds, clone: RAFL22-88-A01 Length = 645 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 524 gcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcc 583 ||||||||||| ||||| ||||| |||||||| ||||| || || |||||||| || ||| Sbjct: 110 gcaccaccacctggaactatgccttcctcgatagcagcaaatgttgcgttctttgcatcc 51 Query: 584 tcgatccgcagctgacggtcctcgagctc 612 ||||| || |||| ||||||||| ||||| Sbjct: 50 tcgatacgaagcttacggtcctcaagctc 22
>gb|U49357.1|ATU49357 Arabidopsis thaliana chaperonin-60 alpha subunit gene, nuclear gene encoding plastid protein, complete cds Length = 4365 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 524 gcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcc 583 ||||||||||| ||||| ||||| |||||||| ||||| || || |||||||| || ||| Sbjct: 2774 gcaccaccacctggaactatgccttcctcgatagcagcaaatgttgcgttctttgcatcc 2715 Query: 584 tcgatccgcagctgacggtcctcgagctc 612 ||||| || |||| ||||||||| ||||| Sbjct: 2714 tcgatacgaagcttacggtcctcaagctc 2686
>emb|BX819680.1|CNS0A9ZT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZF10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2019 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 524 gcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcc 583 ||||||||||| ||||| ||||| |||||||| ||||| || || |||||||| || ||| Sbjct: 1448 gcaccaccacctggaactatgccttcctcgatagcagcaaatgttgcgttctttgcatcc 1389 Query: 584 tcgatccgcagctgacggtcctcgagctc 612 ||||| || |||| ||||||||| ||||| Sbjct: 1388 tcgatacgaagcttacggtcctcaagctc 1360
>gb|AY086555.1| Arabidopsis thaliana clone 25773 mRNA, complete sequence Length = 1996 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 524 gcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcc 583 ||||||||||| ||||| ||||| |||||||| ||||| || || |||||||| || ||| Sbjct: 1459 gcaccaccacctggaactatgccttcctcgatagcagcaaatgttgcgttctttgcatcc 1400 Query: 584 tcgatccgcagctgacggtcctcgagctc 612 ||||| || |||| ||||||||| ||||| Sbjct: 1399 tcgatacgaagcttacggtcctcaagctc 1371
>gb|BT002441.1| Arabidopsis thaliana putative rubisco subunit binding-protein alpha subunit (At2g28000) mRNA, complete cds Length = 2020 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 524 gcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcc 583 ||||||||||| ||||| ||||| |||||||| ||||| || || |||||||| || ||| Sbjct: 1464 gcaccaccacctggaactatgccttcctcgatagcagcaaatgttgcgttctttgcatcc 1405 Query: 584 tcgatccgcagctgacggtcctcgagctc 612 ||||| || |||| ||||||||| ||||| Sbjct: 1404 tcgatacgaagcttacggtcctcaagctc 1376
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 71.9 bits (36), Expect = 2e-09 Identities = 165/208 (79%) Strand = Plus / Plus Query: 194 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 253 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 35977733 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 35977792 Query: 254 tggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggttctcg 313 || | ||| ||||| |||||||| || ||||| || ||||| | || | || ||||||| Sbjct: 35977793 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 35977852 Query: 314 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 373 | |||| | |||||| ||||| || | |||||| || || ||||||||||| || | Sbjct: 35977853 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatcttttctaca 35977912 Query: 374 acaacttccccttccactccagcgttgt 401 | ||||||||||| |||||||| |||| Sbjct: 35977913 atcacttccccttcaactccagcattgt 35977940 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 432 ccttctgaatgatgtcagcaccaaggcgctc 462 |||| |||||||| ||||||||||||||||| Sbjct: 35978185 ccttttgaatgatatcagcaccaaggcgctc 35978215 Score = 42.1 bits (21), Expect = 2.1 Identities = 87/109 (79%) Strand = Plus / Plus Query: 509 aggtgcacatatgccgcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtg 568 ||||| ||||| ||||||||||| || || || || || ||||| || ||||| || || Sbjct: 35978262 aggtgaacataggccgcaccacctccaggtactataccttcctcaatagcagcaaatgtt 35978321 Query: 569 gcgttcttcgcgtcctcgatccgcagctgacggtcctcgagctctgtct 617 || ||||| || |||||||| || |||| || ||||| |||||||||| Sbjct: 35978322 gcattcttggcatcctcgatacgaagcttgcgatcctcaagctctgtct 35978370
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 71.9 bits (36), Expect = 2e-09 Identities = 165/208 (79%) Strand = Plus / Plus Query: 194 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 253 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 39244 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 39303 Query: 254 tggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggttctcg 313 || | ||| ||||| |||||||| || ||||| || ||||| | || | || ||||||| Sbjct: 39304 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 39363 Query: 314 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 373 | |||| | |||||| ||||| || | |||||| || || ||||||||||| || | Sbjct: 39364 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatcttttctaca 39423 Query: 374 acaacttccccttccactccagcgttgt 401 | ||||||||||| |||||||| |||| Sbjct: 39424 atcacttccccttcaactccagcattgt 39451 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 432 ccttctgaatgatgtcagcaccaaggcgctc 462 |||| |||||||| ||||||||||||||||| Sbjct: 39696 ccttttgaatgatatcagcaccaaggcgctc 39726 Score = 42.1 bits (21), Expect = 2.1 Identities = 87/109 (79%) Strand = Plus / Plus Query: 509 aggtgcacatatgccgcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtg 568 ||||| ||||| ||||||||||| || || || || || ||||| || ||||| || || Sbjct: 39773 aggtgaacataggccgcaccacctccaggtactataccttcctcaatagcagcaaatgtt 39832 Query: 569 gcgttcttcgcgtcctcgatccgcagctgacggtcctcgagctctgtct 617 || ||||| || |||||||| || |||| || ||||| |||||||||| Sbjct: 39833 gcattcttggcatcctcgatacgaagcttgcgatcctcaagctctgtct 39881
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 71.9 bits (36), Expect = 2e-09 Identities = 165/208 (79%) Strand = Plus / Plus Query: 194 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 253 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 36067807 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 36067866 Query: 254 tggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggttctcg 313 || | ||| ||||| |||||||| || ||||| || ||||| | || | || ||||||| Sbjct: 36067867 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 36067926 Query: 314 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 373 | |||| | |||||| ||||| || | |||||| || || ||||||||||| || | Sbjct: 36067927 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatcttttctaca 36067986 Query: 374 acaacttccccttccactccagcgttgt 401 | ||||||||||| |||||||| |||| Sbjct: 36067987 atcacttccccttcaactccagcattgt 36068014 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 432 ccttctgaatgatgtcagcaccaaggcgctc 462 |||| |||||||| ||||||||||||||||| Sbjct: 36068259 ccttttgaatgatatcagcaccaaggcgctc 36068289 Score = 42.1 bits (21), Expect = 2.1 Identities = 87/109 (79%) Strand = Plus / Plus Query: 509 aggtgcacatatgccgcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtg 568 ||||| ||||| ||||||||||| || || || || || ||||| || ||||| || || Sbjct: 36068336 aggtgaacataggccgcaccacctccaggtactataccttcctcaatagcagcaaatgtt 36068395 Query: 569 gcgttcttcgcgtcctcgatccgcagctgacggtcctcgagctctgtct 617 || ||||| || |||||||| || |||| || ||||| |||||||||| Sbjct: 36068396 gcattcttggcatcctcgatacgaagcttgcgatcctcaagctctgtct 36068444
>gb|M35599.1|BNA60CPNA B.napus plastid 60-kDa chaperonin-60 alpha-polypeptide (cpn-60 alpha) mRNA, 3' end Length = 1789 Score = 69.9 bits (35), Expect = 9e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 551 tcgatggcagcgaaagtggcgttcttcgcgtcctcgatccgcagctgacggtcctcgagc 610 ||||| ||||| || || |||||||||||||||||||| || |||| ||||||||||||| Sbjct: 1237 tcgattgcagcaaatgtagcgttcttcgcgtcctcgatacgaagcttacggtcctcgagc 1178 Query: 611 tctgtct 617 || |||| Sbjct: 1177 tcagtct 1171
>gb|L27472.1|CRECPN1B Chlamydomonas reinhardtii chaperonin alpha-like subunit, complete cds Length = 2420 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 533 ccgggaacaatgccctcctcgatggcagcgaaagtggcgttcttcgcgtcctcgatccgc 592 ||||| || ||||||||||| | ||| ||||| ||||||||||| |||||||| || ||| Sbjct: 1345 ccgggcacgatgccctcctccacggcggcgaaggtggcgttcttggcgtcctcaatgcgc 1286 Query: 593 agctgacggtcctcgagctc 612 |||| |||||||| ||||| Sbjct: 1285 agcttgcggtcctccagctc 1266 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 gtcaccttggcggggtcgat 288 |||||||||||||||||||| Sbjct: 1609 gtcaccttggcggggtcgat 1590
>gb|DQ295240.1| Uncultured marine bacterium Ant29B7, partial genomic sequence Length = 40351 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 525 caccaccaccgggaacaatgccctcctcgatggcagc 561 ||||||| ||||||||||| ||||||||||||||||| Sbjct: 26691 caccaccgccgggaacaataccctcctcgatggcagc 26655
>ref|XM_814415.1| Trypanosoma cruzi strain CL Brener chaperonin HSP60, mitochondrial precursor (Tc00.1047053507641.290) partial mRNA Length = 1680 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 525 caccaccaccgggaacaatgccctcct 551 ||||||||||||||||||||||||||| Sbjct: 1279 caccaccaccgggaacaatgccctcct 1253
>emb|X95971.1|SLGROEL2G S.lividans groEL2 gene Length = 2192 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 245 gcggcgttctggagcgcgcatctcgtcaccttggcggggtcga 287 |||||||||||||||||| | | |||||||||||| ||||||| Sbjct: 1992 gcggcgttctggagcgcggaacgcgtcaccttggccgggtcga 1950
>emb|X67473.1|TCHSP60 T.cruzi hsp60 gene Length = 2100 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 525 caccaccaccgggaacaatgccctcct 551 ||||||||||||||||||||||||||| Sbjct: 1686 caccaccaccgggaacaatgccctcct 1660
>gb|L08791.1|TRBHSP60A Trypanosoma cruzi heat shock protein 60 mRNA, complete cds and flanking regions Length = 2020 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 525 caccaccaccgggaacaatgccctcct 551 ||||||||||||||||||||||||||| Sbjct: 1424 caccaccaccgggaacaatgccctcct 1398
>gb|M76658.1|STMGROELY Streptomyces albus open reading frame (GROEL2) gene, complete cds Length = 1814 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 245 gcggcgttctggagcgcgcatctcgtcaccttggcggggtcga 287 |||||||||||||||||| | | |||||||||||| ||||||| Sbjct: 1614 gcggcgttctggagcgcggaacgcgtcaccttggccgggtcga 1572
>gb|AY389619.1| Hyacinthus orientalis chaperonin groEL mRNA, partial cds Length = 313 Score = 48.1 bits (24), Expect = 0.034 Identities = 51/60 (85%) Strand = Plus / Minus Query: 184 cttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccga 243 |||||||||||||||||| || || || ||||| || || ||||||||||| | |||||| Sbjct: 101 cttcggcttgggcttctccaccacaatggcttgtgttgttaggaccattccagccaccga 42
>gb|BT013144.1| Lycopersicon esculentum clone 134139R, mRNA sequence Length = 2052 Score = 46.1 bits (23), Expect = 0.14 Identities = 68/83 (81%) Strand = Plus / Minus Query: 314 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 373 |||||||| ||||| || ||||||||||||| ||| | ||| |||| |||||||| | Sbjct: 1676 tacttgtcggtcattgcattgtaacccatcttccatttgctgccctttatcttctccact 1617 Query: 374 acaacttccccttccactccagc 396 || ||||||||||| || ||||| Sbjct: 1616 actacttccccttcaaccccagc 1594 Score = 40.1 bits (20), Expect = 8.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 524 gcaccaccaccgggaacaatgccctcctcgatggcagcgaaagt 567 ||||||||||| || ||||| ||||| || || ||||||||||| Sbjct: 1466 gcaccaccaccaggtacaattccctcttcaattgcagcgaaagt 1423
>ref|XM_814413.1| Trypanosoma cruzi strain CL Brener chaperonin HSP60, mitochondrial precursor (Tc00.1047053507641.280) partial mRNA Length = 1683 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 525 caccaccaccgggaacaatgccctcct 551 ||||||||||||||||||| ||||||| Sbjct: 1273 caccaccaccgggaacaataccctcct 1247
>ref|XM_814417.1| Trypanosoma cruzi strain CL Brener chaperonin HSP60, mitochondrial precursor (Tc00.1047053507641.300) partial mRNA Length = 787 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 525 caccaccaccgggaacaatgccctcct 551 ||||||||||||||||||| ||||||| Sbjct: 377 caccaccaccgggaacaataccctcct 351
>emb|X07852.1|RCRSBA Castor-bean mRNA for Rubisco subunit binding-protein alpha subunit Length = 1488 Score = 46.1 bits (23), Expect = 0.14 Identities = 56/67 (83%) Strand = Plus / Minus Query: 519 atgccgcaccaccaccgggaacaatgccctcctcgatggcagcgaaagtggcgttcttcg 578 |||| ||||||||||| || |||||||| ||||| || ||||| || || |||||||| | Sbjct: 1217 atgcagcaccaccaccagggacaatgccttcctctattgcagcaaatgtagcgttcttgg 1158 Query: 579 cgtcctc 585 | ||||| Sbjct: 1157 catcctc 1151
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16 Length = 349981 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 568 ggcgttcttcgcgtcctcgatcc 590 ||||||||||||||||||||||| Sbjct: 47672 ggcgttcttcgcgtcctcgatcc 47694
>emb|X95992.1|EGHSP60GN E.gracilis mRNA for heat shock protein 60 Length = 1946 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 524 gcaccaccaccgggaacaatgccctc 549 ||||||||||||||||| |||||||| Sbjct: 1297 gcaccaccaccgggaacgatgccctc 1272
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 271 caccttggcggggtcgatgacacccgact 299 |||||| || ||||||||||||||||||| Sbjct: 423825 caccttcgccgggtcgatgacacccgact 423853
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 ggcggcgttctggagcgcgca 264 ||||||||||||||||||||| Sbjct: 752794 ggcggcgttctggagcgcgca 752774
>gb|BT013632.1| Lycopersicon esculentum clone 132434F, mRNA sequence Length = 2127 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 525 caccaccaccgggaacaatgccctc 549 |||||||||| |||||||||||||| Sbjct: 1435 caccaccacctggaacaatgccctc 1411
>gb|AY545024.1| Burkholderia pseudomallei clone BPtf0037 putative AraC/XylS family transcription factor gene, complete cds Length = 984 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 ggcggcgttctggagcgcgca 264 ||||||||||||||||||||| Sbjct: 69 ggcggcgttctggagcgcgca 89
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 ggcggcgttctggagcgcgca 264 ||||||||||||||||||||| Sbjct: 2073040 ggcggcgttctggagcgcgca 2073020
>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7 Length = 349122 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 527 ccaccaccgggaacaatgccctcctcgat 555 |||||||||||||||||||| || ||||| Sbjct: 29709 ccaccaccgggaacaatgccttcttcgat 29681
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 tatccttgatcttctcgatca 374 ||||||||||||||||||||| Sbjct: 69531 tatccttgatcttctcgatca 69511
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 acctttttcactttcaattga 58 ||||||||||||||||||||| Sbjct: 146204 acctttttcactttcaattga 146184
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 ggcggcgttctggagcgcgca 264 ||||||||||||||||||||| Sbjct: 1647447 ggcggcgttctggagcgcgca 1647427
>dbj|AK047518.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930082I23 product:unclassifiable, full insert sequence Length = 3307 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 467 tggtcttcaattgtttctttg 487 ||||||||||||||||||||| Sbjct: 2488 tggtcttcaattgtttctttg 2508
>gb|U21105.1|PSU21105 Pisum sativum alphacpn60 precursor (alphacpn60) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1977 Score = 42.1 bits (21), Expect = 2.1 Identities = 42/49 (85%) Strand = Plus / Minus Query: 188 ggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccgg 236 ||||||||||| ||||||||||| || || ||||| | |||||| |||| Sbjct: 1751 ggcttgggcttttcgacgacgatggcctgtgtggttaagaccatcccgg 1703
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 caccgaggcggcgttctggagcgcg 262 |||||| |||||||||||||||||| Sbjct: 2700886 caccgacgcggcgttctggagcgcg 2700910
>gb|AC115740.8| Mus musculus chromosome 3, clone RP23-476G18, complete sequence Length = 226125 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 467 tggtcttcaattgtttctttg 487 ||||||||||||||||||||| Sbjct: 150239 tggtcttcaattgtttctttg 150259
>dbj|AB039274.1| Propionibacterium granulosum hsp60 gene for 60 kDa heat shock protein, partial cds Length = 1688 Score = 42.1 bits (21), Expect = 2.1 Identities = 42/49 (85%) Strand = Plus / Minus Query: 242 gaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatga 290 |||| ||||||||| || ||| | | |||||||||||| |||||||||| Sbjct: 1606 gaggaggcgttctgcagggcggaacgcgtcaccttggccgggtcgatga 1558
>gb|AY780524.1| Ictalurus punctatus heat shock protein 60-like mRNA, partial sequence Length = 186 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 527 ccaccaccgggaacaatgccctcctcga 554 ||||| ||||||||||||||||| |||| Sbjct: 59 ccacctccgggaacaatgccctcttcga 32
>gb|AC137713.8| Mus musculus chromosome 15, clone RP24-468P6, complete sequence Length = 155341 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 agggacataggtagataggt 512 |||||||||||||||||||| Sbjct: 126402 agggacataggtagataggt 126383
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 574 cttcgcgtcctcgatccgca 593 |||||||||||||||||||| Sbjct: 3161870 cttcgcgtcctcgatccgca 3161851
>gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome 6, complete sequence Length = 188132 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 cctgaactgaagcatctaaa 104 |||||||||||||||||||| Sbjct: 123998 cctgaactgaagcatctaaa 124017
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 caccgaggcggcgttctgga 257 |||||||||||||||||||| Sbjct: 344526 caccgaggcggcgttctgga 344545
>gb|AC105337.7| Homo sapiens chromosome 17, clone CTD-2116F7, complete sequence Length = 126083 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 cttgcaatgccttctgaatg 442 |||||||||||||||||||| Sbjct: 9004 cttgcaatgccttctgaatg 9023
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cggcttgggcttctcgacga 206 |||||||||||||||||||| Sbjct: 2275572 cggcttgggcttctcgacga 2275553
>gb|AY688374.2| Lates calcarifer parvalbumin beta-1 gene, complete cds Length = 2749 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 ttctgaatgatgtcagcacc 453 |||||||||||||||||||| Sbjct: 1748 ttctgaatgatgtcagcacc 1767
>gb|AC138405.6| Mus musculus chromosome 1, clone RP24-280N11, complete sequence Length = 151783 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 ttagccttcggcttgggctt 198 |||||||||||||||||||| Sbjct: 147389 ttagccttcggcttgggctt 147408
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 caccttggcggggtcgatga 290 |||||||||||||||||||| Sbjct: 8267338 caccttggcggggtcgatga 8267319
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 accttggcggggtcgatgacaccc 295 |||||| ||||||||||||||||| Sbjct: 639066 accttgacggggtcgatgacaccc 639043
>emb|AJ338304.1|HSA338304 Homo sapiens genomic sequence surrounding NotI site, clone NR1-PA22RS Length = 717 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 gtggtcttcaattgtttctt 485 |||||||||||||||||||| Sbjct: 522 gtggtcttcaattgtttctt 541
>gb|AC147627.6| Mus musculus BAC clone RP24-382F19 from Y, complete sequence Length = 226237 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 gaactgaagcatctaaaaaa 107 |||||||||||||||||||| Sbjct: 206536 gaactgaagcatctaaaaaa 206517
>gb|AF062920.1|AF062920 Thermus aquaticus DNA polymerase III (dnaE) gene, complete cds Length = 4526 Score = 40.1 bits (20), Expect = 8.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 242 gaggcggcgttctggagcgcgcatctcgtcaccttggcggggtc 285 |||||||||||||| || ||| | | ||||||||||||||||| Sbjct: 4104 gaggcggcgttctgcagggcggagcgggtcaccttggcggggtc 4147
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cggcttgggcttctcgacga 206 |||||||||||||||||||| Sbjct: 2297918 cggcttgggcttctcgacga 2297899
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 gcggcgttctggagcgcgca 264 |||||||||||||||||||| Sbjct: 995302 gcggcgttctggagcgcgca 995321
>gb|AC173476.2| Mus musculus BAC clone RP24-335D7 from chromosome 12, complete sequence Length = 182245 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 gaactgaagcatctaaaaaa 107 |||||||||||||||||||| Sbjct: 115349 gaactgaagcatctaaaaaa 115330
>gb|U57000.1|TVU57000 Trichomonas vaginalis chaperonin 60 (cpn60) mRNA, partial cds Length = 1678 Score = 40.1 bits (20), Expect = 8.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 526 accaccaccgggaacaatgccctcctcgatggcagc 561 ||||||||| | ||| ||||| |||||||||||||| Sbjct: 1252 accaccaccagcaacgatgccttcctcgatggcagc 1217
>emb|AL591762.13| Mouse DNA sequence from clone RP23-465I6 on chromosome 2, complete sequence Length = 137773 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 cttgcaatgccttctgaatg 442 |||||||||||||||||||| Sbjct: 109544 cttgcaatgccttctgaatg 109563 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,202,736 Number of Sequences: 3902068 Number of extensions: 4202736 Number of successful extensions: 83470 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82504 Number of HSP's gapped (non-prelim): 942 length of query: 617 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 594 effective length of database: 17,143,297,704 effective search space: 10183118836176 effective search space used: 10183118836176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
