Clone Information

BLAST Search Result

Clone Name	rbags33a13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 h...	138	9e-33
2	CD48A_ARATH (P54609) Cell division control protein 48 homolog A ...	137	2e-32
3	CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E ...	134	2e-31
4	CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Val...	130	2e-30
5	CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog	129	5e-30
6	TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER...	110	2e-24
7	TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER...	110	2e-24
8	TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (T...	110	2e-24
9	TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (T...	110	2e-24
10	TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (T...	107	2e-23
11	TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase h...	103	3e-22
12	TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase h...	101	1e-21
13	CDC48_YEAST (P25694) Cell division control protein 48	72	1e-12
14	CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48	70	3e-12
15	CDAT_PLAF7 (P46468) Putative cell division cycle ATPase	42	0.001
16	Y1297_ARCFU (O28972) Cell division cycle protein 48 homolog AF1297	40	0.004
17	PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteaso...	34	0.24
18	KTNA1_ARATH (Q9SEX2) Katanin p60 ATPase-containing subunit (EC 3...	34	0.24
19	KTNA1_HUMAN (O75449) Katanin p60 ATPase-containing subunit A1 (E...	34	0.31
20	Y1156_METJA (Q58556) Cell division cycle protein 48 homolog MJ1156	33	0.41
21	ATD1B_BRARE (Q503W7) ATPase family AAA domain-containing protein...	33	0.53
22	PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteaso...	33	0.53
23	PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteaso...	32	1.2
24	KTNA1_RAT (Q6E0V2) Katanin p60 ATPase-containing subunit A1 (EC ...	32	1.2
25	KTNA1_MOUSE (Q9WV86) Katanin p60 ATPase-containing subunit A1 (E...	32	1.2
26	MSP1_YEAST (P28737) Protein MSP1 (TAT-binding homolog 4)	32	1.5
27	KATL1_HUMAN (Q9BW62) Katanin p60 ATPase-containing subunit A-lik...	32	1.5
28	KATL1_RAT (Q5XIK7) Katanin p60 ATPase-containing subunit A-like ...	32	1.5
29	PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteaso...	31	2.0
30	KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3...	31	2.0
31	ATD1A_BRARE (Q7ZZ25) ATPase family AAA domain-containing protein...	31	2.0
32	PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Prote...	31	2.6
33	PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Prote...	31	2.6
34	PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Prote...	31	2.6
35	SPAST_MOUSE (Q9QYY8) Spastin	31	2.6
36	SPAST_HUMAN (Q9UBP0) Spastin	31	2.6
37	SAV_SULAC (Q07590) SAV protein	31	2.6
38	ATAD1_RAT (Q505J9) ATPase family AAA domain-containing protein 1	30	3.4
39	ATAD1_MOUSE (Q9D5T0) ATPase family AAA domain-containing protein 1	30	3.4
40	ATAD1_HUMAN (Q8NBU5) ATPase family AAA domain-containing protein 1	30	3.4
41	PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteaso...	30	3.4
42	VAT_THEAC (O05209) VCP-like ATPase	30	3.4
43	PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteaso...	30	3.4
44	KATL1_MOUSE (Q8K0T4) Katanin p60 ATPase-containing subunit A-lik...	30	3.4
45	ADRO_BOVIN (P08165) NADPH:adrenodoxin oxidoreductase, mitochondr...	30	4.5
46	KTNA1_XENLA (Q9PUL2) Katanin p60 ATPase-containing subunit (EC 3...	30	5.9
47	PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S1...	30	5.9
48	PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteaso...	30	5.9
49	FTSH_TREPA (O83746) Cell division protein ftsH homolog (EC 3.4.2...	29	10.0
50	Y802_XYLFT (Q87D84) UPF0149 protein PD0802	29	10.0
51	PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteaso...	29	10.0
52	SPG7_HUMAN (Q9UQ90) Paraplegin (EC 3.4.24.-) (Spastic paraplegia...	29	10.0

>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D|
            (AtCDC48d) (Transitional endoplasmic reticulum ATPase D)
          Length = 815

 Score =  138 bits (348), Expect = 9e-33
 Identities = 73/111 (65%), Positives = 77/111 (69%)
 Frame = -3

Query: 546  KDIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXX 367
            KD+DL ALAKYTQGFSG DI EICQR+CKYAI                +P          
Sbjct: 672  KDVDLRALAKYTQGFSGADITEICQRSCKYAIRENIEKDIEKERKRAESPEAMEEDEEEI 731

Query: 366  XXEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDQP 214
               I+A HFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPD P
Sbjct: 732  AE-IKAGHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAP 781

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>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)|
          Length = 809

 Score =  137 bits (345), Expect = 2e-32
 Identities = 73/107 (68%), Positives = 76/107 (71%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXX 367
           KD+D+ ALAKYTQGFSG DI EICQRACKYAI                NP          
Sbjct: 672 KDVDIGALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRSENPEAMEEDGVDE 731

Query: 366 XXEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 226
             EI+AAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF
Sbjct: 732 VSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778

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>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)|
           (Transitional endoplasmic reticulum ATPase E)
          Length = 810

 Score =  134 bits (336), Expect = 2e-31
 Identities = 73/108 (67%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXX 367
           KD+D++ALAKYTQGFSG DI EICQRACKYAI                NP          
Sbjct: 671 KDVDVTALAKYTQGFSGADITEICQRACKYAIRENIEKDIENERRRSQNPEAMEEDMVDD 730

Query: 366 XXE-IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 226
               IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF
Sbjct: 731 EVSEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778

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>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing|
            protein homolog) (VCP)
          Length = 807

 Score =  130 bits (327), Expect = 2e-30
 Identities = 70/110 (63%), Positives = 77/110 (70%), Gaps = 1/110 (0%)
 Frame = -3

Query: 546  KDIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXX 367
            K++DL ALA++TQGFSG DI EICQRACKYAI                NP          
Sbjct: 672  KNVDLRALARHTQGFSGADITEICQRACKYAIRENIEKDIERERKSRENPEAMDEDTVDD 731

Query: 366  XXE-IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPD 220
                I+AAHFEESMK+ARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP+
Sbjct: 732  EVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPE 781

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>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog|
          Length = 805

 Score =  129 bits (324), Expect = 5e-30
 Identities = 71/109 (65%), Positives = 75/109 (68%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXX 367
           KDIDL ALAK+TQGFSG D+ EICQRACKYAI                NP          
Sbjct: 672 KDIDLRALAKHTQGFSGADVTEICQRACKYAIRENIEKDIEREKRRQENPDSMDEDVDEV 731

Query: 366 XXEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPD 220
              I+ AHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFG+EFRF D
Sbjct: 732 PE-IKPAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFAD 779

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>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  110 bits (276), Expect = 2e-24
 Identities = 62/108 (57%), Positives = 68/108 (62%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXX 367
           KD+DL  LAK T GFSG D+ EICQRACK AI                NP          
Sbjct: 667 KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDP 726

Query: 366 XXEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 223
             EIR  HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct: 727 VPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 773

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>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  110 bits (276), Expect = 2e-24
 Identities = 62/108 (57%), Positives = 68/108 (62%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXX 367
           KD+DL  LAK T GFSG D+ EICQRACK AI                NP          
Sbjct: 667 KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDP 726

Query: 366 XXEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 223
             EIR  HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct: 727 VPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 773

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>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  110 bits (276), Expect = 2e-24
 Identities = 62/108 (57%), Positives = 68/108 (62%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXX 367
           KD+DL  LAK T GFSG D+ EICQRACK AI                NP          
Sbjct: 667 KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDP 726

Query: 366 XXEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 223
             EIR  HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct: 727 VPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 773

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>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  110 bits (276), Expect = 2e-24
 Identities = 62/108 (57%), Positives = 68/108 (62%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXX 367
           KD+DL  LAK T GFSG D+ EICQRACK AI                NP          
Sbjct: 667 KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDP 726

Query: 366 XXEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 223
             EIR  HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct: 727 VPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 773

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>TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit)
          Length = 805

 Score =  107 bits (268), Expect = 2e-23
 Identities = 61/108 (56%), Positives = 67/108 (62%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXX 367
           KD+D+  LAK T GFSG D+ EICQRACK AI                NP          
Sbjct: 668 KDVDVDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERDRQTNPSAMEVEEDDP 727

Query: 366 XXEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 223
             EIR  HFEE+M+ ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct: 728 VPEIRRDHFEEAMRLARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 774

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>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1|
            (p97/CDC48 homolog 1)
          Length = 809

 Score =  103 bits (257), Expect = 3e-22
 Identities = 57/114 (50%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
 Frame = -3

Query: 546  KDIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXX 367
            KD+DL+ LAK T GFSG D+ EICQRACK AI                            
Sbjct: 675  KDLDLTFLAKNTVGFSGADLTEICQRACKLAIRESIEKEIRIEKERQDRQARGEELMEDD 734

Query: 366  XXE----IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDQ 217
              +    I  AHFEE+MK+ARRSV+D DIRKY+ FAQTLQQSRGFG+ F+FP +
Sbjct: 735  AVDPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFPGE 788

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>TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase homolog 2|
            (p97/CDC48 homolog 2)
          Length = 810

 Score =  101 bits (252), Expect = 1e-21
 Identities = 56/113 (49%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
 Frame = -3

Query: 543  DIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXX 364
            D+DL+ LAK T GFSG D+ EICQRACK AI                             
Sbjct: 674  DLDLNFLAKNTVGFSGADLTEICQRACKLAIRESIEREIRQEKERQDRSARGEELMEDEL 733

Query: 363  XE----IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDQ 217
             +    I  AHFEE+MK+ARRSV+D DIRKY+ FAQTLQQSRGFG+ F+FP +
Sbjct: 734  ADPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFPGE 786

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>CDC48_YEAST (P25694) Cell division control protein 48|
          Length = 835

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 44/121 (36%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
 Frame = -3

Query: 540  IDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXX 361
            ++L+A+AK TQGFSG D+  I QRA KYAI                              
Sbjct: 680  LELTAIAKATQGFSGADLLYIVQRAAKYAIKDSIEAHRQHEAEKEVKVEGEDVEMTDEGA 739

Query: 360  E------------IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDQ 217
            +            I   HF E+MK A+RSVSDA++R+Y+A++Q ++ SRG  S F F D 
Sbjct: 740  KAEQEPEVDPVPYITKEHFAEAMKTAKRSVSDAELRRYEAYSQQMKASRGQFSNFNFNDA 799

Query: 216  P 214
            P
Sbjct: 800  P 800



 Score = 31.6 bits (70), Expect = 1.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           D+DL ALA  T G+ G DI  +C  A    I
Sbjct: 403 DVDLEALAAETHGYVGADIASLCSEAAMQQI 433

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>CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48|
          Length = 815

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 43/111 (38%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
 Frame = -3

Query: 546  KDIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXX 367
            +D+DL A+AK T GFSG D+  + QRA K AI                 P          
Sbjct: 687  EDVDLRAVAKATHGFSGADLEFVVQRAVKLAIKDSIEEDIKRENETGEAPADDVVMDEDA 746

Query: 366  XXE-IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGF-GSEFRFPD 220
                ++  H EE+MK ARRSVSDA++R+Y+A+A  L  SRG  G +F   D
Sbjct: 747  SVSQVQRHHVEEAMKMARRSVSDAEVRRYEAYAHQLLTSRGLTGFQFDSAD 797



 Score = 28.9 bits (63), Expect = 10.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           D+DL  +A  T G+ G D+  +C  A    I
Sbjct: 413 DVDLEQIAAETHGYVGSDLASLCSEAAMQQI 443

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>CDAT_PLAF7 (P46468) Putative cell division cycle ATPase|
          Length = 1229

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
 Frame = -3

Query: 546  KDIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXX 367
            +D+D+  +AK T+GFSG DI  +CQ A   AI                            
Sbjct: 1123 EDVDIHDMAKRTEGFSGADITNLCQSAVNEAIKETIHLLNIRKKEQEEQRKKNKNSFKID 1182

Query: 366  XX-------EIRAAHFEESMKYARRSVSDADIRKYQAFAQTL 262
                      +   HF+ + K AR S+   D+ KY+ F + L
Sbjct: 1183 DTDTYDPVPTLSKKHFDLAFKNARISIQPEDVLKYEKFKEKL 1224

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>Y1297_ARCFU (O28972) Cell division cycle protein 48 homolog AF1297|
          Length = 733

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 24/88 (27%), Positives = 39/88 (44%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXX 364
           D+++  LA+ T+G+SG DI  +C+ A   AI                             
Sbjct: 645 DVNIEELAEKTEGYSGADIEAVCREAGMLAIRELIKPGM----------TREEAKEAAKK 694

Query: 363 XEIRAAHFEESMKYARRSVSDADIRKYQ 280
            +I   HFEE++K  R S++  D+ KY+
Sbjct: 695 LKITKKHFEEALKKVRPSLTKEDVEKYE 722



 Score = 33.5 bits (75), Expect = 0.41
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           +D+DL  LA+ T GF G D+  +C+ A  +A+
Sbjct: 370 EDVDLEELAELTNGFVGADLEALCKEAAMHAL 401

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>PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 436

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 17/32 (53%), Positives = 20/32 (62%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           +D+DL  LAK T+G SG DI  IC  A   AI
Sbjct: 370 EDVDLQKLAKITEGASGADIKAICTEAGMMAI 401

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>KTNA1_ARATH (Q9SEX2) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)|
           (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase)
           (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3
           protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein)
           (AtAAA1)
          Length = 523

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 19/88 (21%), Positives = 39/88 (44%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXX 364
           D+++  +A+ T+G+SGDD+  +C+ A    +                +            
Sbjct: 434 DVNIEDVARRTEGYSGDDLTNVCRDASMNGM-------RRKIAGKTRDEIKNMSKDDISN 486

Query: 363 XEIRAAHFEESMKYARRSVSDADIRKYQ 280
             +    FEE+++  + SVS +DI K++
Sbjct: 487 DPVAMCDFEEAIRKVQPSVSSSDIEKHE 514

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>KTNA1_HUMAN (O75449) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)|
           (Katanin p60 subunit A1) (p60 katanin)
          Length = 491

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 22/88 (25%), Positives = 37/88 (42%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXX 364
           D+DL+++A+  +G+SG DI  +C+ A   A+                             
Sbjct: 403 DVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSKEEMHMPTT---- 458

Query: 363 XEIRAAHFEESMKYARRSVSDADIRKYQ 280
                  FE ++K   +SVS ADI +Y+
Sbjct: 459 ----MEDFEMALKKVSKSVSAADIERYE 482

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>Y1156_METJA (Q58556) Cell division cycle protein 48 homolog MJ1156|
          Length = 903

 Score = 33.5 bits (75), Expect = 0.41
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           +D++L  LAK T+G++G DI  +C+ A   A+
Sbjct: 641 EDVNLEELAKKTEGYTGADIEALCREAAMLAV 672



 Score = 31.2 bits (69), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           +D+DL  LA  T GF G D+  +C+ A   A+
Sbjct: 367 EDVDLDYLADVTHGFVGADLAALCKEAAMRAL 398

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>ATD1B_BRARE (Q503W7) ATPase family AAA domain-containing protein 1-B|
          Length = 362

 Score = 33.1 bits (74), Expect = 0.53
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -3

Query: 540 IDLSALAKYTQGFSGDDIXEICQRA 466
           ++LS +AK T GFSG D+ E+C+ A
Sbjct: 286 VELSEIAKQTDGFSGSDLREMCRDA 310

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>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 398

 Score = 33.1 bits (74), Expect = 0.53
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           +D+D   LA+ T+G SG DI  IC  A  +AI
Sbjct: 332 EDVDFKELARITEGASGADIKAICTEAGMFAI 363

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>PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 409

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           D+DL A+AK T+GFSG D+  +   A   AI
Sbjct: 331 DVDLEAIAKLTEGFSGADLKAVVVEAGYNAI 361

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>KTNA1_RAT (Q6E0V2) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)|
           (Katanin p60 subunit A1) (p60 katanin)
          Length = 491

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 21/88 (23%), Positives = 37/88 (42%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXX 364
           D++L+++A+  +G+SG DI  +C+ A   A+                             
Sbjct: 403 DVNLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSREEMHMPTT---- 458

Query: 363 XEIRAAHFEESMKYARRSVSDADIRKYQ 280
                  FE ++K   +SVS ADI +Y+
Sbjct: 459 ----MEDFEMALKKVSKSVSAADIERYE 482

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>KTNA1_MOUSE (Q9WV86) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)|
           (Katanin p60 subunit A1) (p60 katanin) (Lipotransin)
          Length = 491

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 21/88 (23%), Positives = 37/88 (42%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXX 364
           D++L+++A+  +G+SG DI  +C+ A   A+                             
Sbjct: 403 DVNLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSREAMHMPTT---- 458

Query: 363 XEIRAAHFEESMKYARRSVSDADIRKYQ 280
                  FE ++K   +SVS ADI +Y+
Sbjct: 459 ----MEDFEMALKKISKSVSAADIERYE 482

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>MSP1_YEAST (P28737) Protein MSP1 (TAT-binding homolog 4)|
          Length = 362

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRA 466
           + DL  +A  T+GFSG D+ E+C+ A
Sbjct: 280 EFDLQLIADNTKGFSGSDLKELCREA 305

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>KATL1_HUMAN (Q9BW62) Katanin p60 ATPase-containing subunit A-like 1 (EC|
           3.6.4.3) (Katanin p60 subunit A-like 1) (p60
           katanin-like 1)
          Length = 490

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 22/88 (25%), Positives = 35/88 (39%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXX 364
           DI L  +A+  +G+SG DI  +C+ A   A+                             
Sbjct: 402 DIQLEDIAEKIEGYSGADITNVCRDASLMAM--------RRRINGLSPEEIRALSKEELQ 453

Query: 363 XEIRAAHFEESMKYARRSVSDADIRKYQ 280
             +    FE ++K   +SVS AD+ KY+
Sbjct: 454 MPVTKGDFELALKKIAKSVSAADLEKYE 481

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>KATL1_RAT (Q5XIK7) Katanin p60 ATPase-containing subunit A-like 1 (EC|
           3.6.4.3) (Katanin p60 subunit A-like 1) (p60
           katanin-like 1)
          Length = 488

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 23/88 (26%), Positives = 35/88 (39%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXX 364
           DI L  +A+ T+G+SG DI  IC+ A   A+                             
Sbjct: 400 DIHLEDIAEKTEGYSGADITNICRDASLMAM--------RRRINGLSPEEIRALSKEELQ 451

Query: 363 XEIRAAHFEESMKYARRSVSDADIRKYQ 280
             +     E ++K   +SVS AD+ KY+
Sbjct: 452 MPVTRGDLELALKKIAKSVSAADLEKYE 479

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>PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 393

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           +I+L  L++ T+GFSG DI  +C  A   AI
Sbjct: 326 NINLELLSQLTEGFSGADIKNVCVEAAYMAI 356

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>KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)|
           (Katanin p60 subunit) (p60 katanin)
          Length = 516

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           DIDL ++A+   G+SG DI  +C+ A   A+
Sbjct: 428 DIDLKSIAEKMDGYSGADITNVCRDASMMAM 458

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>ATD1A_BRARE (Q7ZZ25) ATPase family AAA domain-containing protein 1-A|
          Length = 380

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 540 IDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           I+L  +A  ++G+SG D+ E+C+ A  Y +
Sbjct: 285 INLKEIASQSEGYSGSDLKELCRDAAMYRV 314

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>PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6) (Conserved ATPase
           domain protein 44) (CADp44)
          Length = 389

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           +ID  A+ K + GF+G D+  +C  A  +AI
Sbjct: 325 EIDYEAIVKLSDGFNGADLRNVCTEAGMFAI 355

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>PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           +ID  A+ K + GF+G D+  +C  A  +AI
Sbjct: 325 EIDYEAIVKLSDGFNGADLRNVCTEAGMFAI 355

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>PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           +ID  A+ K + GF+G D+  +C  A  +AI
Sbjct: 325 EIDYEAIVKLSDGFNGADLRNVCTEAGMFAI 355

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>SPAST_MOUSE (Q9QYY8) Spastin|
          Length = 614

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 22/85 (25%), Positives = 33/85 (38%)
 Frame = -3

Query: 537 DLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 358
           +L+ LA+ T G+SG D+  + + A    I                 P             
Sbjct: 531 ELAQLARMTDGYSGSDLTALAKDAALGPI-------------RELKPEQVKNMSASEMRN 577

Query: 357 IRAAHFEESMKYARRSVSDADIRKY 283
           IR + F ES+K  +RSVS   +  Y
Sbjct: 578 IRLSDFTESLKKIKRSVSPQTLEAY 602

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>SPAST_HUMAN (Q9UBP0) Spastin|
          Length = 616

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 22/85 (25%), Positives = 33/85 (38%)
 Frame = -3

Query: 537 DLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 358
           +L+ LA+ T G+SG D+  + + A    I                 P             
Sbjct: 533 ELAQLARMTDGYSGSDLTALAKDAALGPI-------------RELKPEQVKNMSASEMRN 579

Query: 357 IRAAHFEESMKYARRSVSDADIRKY 283
           IR + F ES+K  +RSVS   +  Y
Sbjct: 580 IRLSDFTESLKKIKRSVSPQTLEAY 604

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>SAV_SULAC (Q07590) SAV protein|
          Length = 780

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           D+DL  LA+ T G++G D+  + + A  YA+
Sbjct: 401 DVDLDKLAEMTYGYTGADLAALAKEAAIYAL 431

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>ATAD1_RAT (Q505J9) ATPase family AAA domain-containing protein 1|
          Length = 361

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRA 466
           + +DL  +A+ T GFSG D+ E+C+ A
Sbjct: 280 RHVDLLEVAQETDGFSGSDLKEMCRDA 306

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>ATAD1_MOUSE (Q9D5T0) ATPase family AAA domain-containing protein 1|
          Length = 361

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRA 466
           + +DL  +A+ T GFSG D+ E+C+ A
Sbjct: 280 RHVDLLEVAQETDGFSGSDLKEMCRDA 306

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>ATAD1_HUMAN (Q8NBU5) ATPase family AAA domain-containing protein 1|
          Length = 361

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRA 466
           + +DL  +A+ T GFSG D+ E+C+ A
Sbjct: 280 RHVDLLEVAQETDGFSGSDLKEMCRDA 306

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>PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 421

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           DID   LAK T+G SG D+  I   A  +A+
Sbjct: 351 DIDFKKLAKVTEGMSGADLKAIATEAGMFAV 381

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>VAT_THEAC (O05209) VCP-like ATPase|
          Length = 745

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 20/97 (20%), Positives = 41/97 (42%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXX 364
           D+DL+ +A+ T+G+ G D+  +C+ A   A                              
Sbjct: 657 DVDLNDIAQRTEGYVGADLENLCREAGMNA-----------------------YRENPDA 693

Query: 363 XEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQS 253
             +   +F +++K  R SV +  I+ Y+  ++T+ +S
Sbjct: 694 TSVSQKNFLDALKTIRPSVDEEVIKFYRTLSETMSKS 730

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>PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 420

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           +DID   LAK T+G SG D+  I   A  +A+
Sbjct: 350 EDIDFKKLAKATEGMSGADLKAIATEAGMFAV 381

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>KATL1_MOUSE (Q8K0T4) Katanin p60 ATPase-containing subunit A-like 1 (EC|
           3.6.4.3) (Katanin p60 subunit A-like 1) (p60
           katanin-like 1)
          Length = 488

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 22/88 (25%), Positives = 34/88 (38%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXX 364
           D+ L  +A  T+G+SG DI  IC+ A   A+                             
Sbjct: 400 DVHLEDIADKTEGYSGADITNICRDASLMAM--------RRRINGLSPEEIRALSKEELQ 451

Query: 363 XEIRAAHFEESMKYARRSVSDADIRKYQ 280
             +     E ++K   +SVS AD+ KY+
Sbjct: 452 MPVTRGDLELALKKIAKSVSAADLEKYE 479

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>ADRO_BOVIN (P08165) NADPH:adrenodoxin oxidoreductase, mitochondrial precursor|
           (EC 1.18.1.2) (Adrenodoxin reductase) (AR) (Ferredoxin
           reductase) (Ferredoxin--NADP(+) reductase)
          Length = 492

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 398 PKQWRRMRWTRWLRSELPTSRS 333
           P+ WR   W+ W R+ LP SRS
Sbjct: 3   PRCWRWWPWSSWTRTRLPPSRS 24

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>KTNA1_XENLA (Q9PUL2) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)|
           (Katanin p60 subunit) (p60 katanin) (Fragment)
          Length = 486

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 20/88 (22%), Positives = 34/88 (38%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXX 364
           D+++  +A+   G+SG DI  +C+ A   A+                             
Sbjct: 400 DVNIECIAENMDGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSRDDMHMPTT---- 455

Query: 363 XEIRAAHFEESMKYARRSVSDADIRKYQ 280
                  FE ++K   +SVS +DI KY+
Sbjct: 456 ----MEDFEMALKKVSKSVSASDIEKYE 479

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>PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S10B (Proteasome|
           regulatory particle ATPase-like protein 4)
          Length = 406

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           +ID  A+ K + GFS  D+  +C  A  +AI
Sbjct: 342 EIDFEAVVKLSDGFSAADLRNVCTEAGMFAI 372

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>PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           K +DL A+A+ T+G SG D+  I   A  +AI
Sbjct: 330 KGVDLRAIAEMTEGASGADLKAIATEAGMFAI 361

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>FTSH_TREPA (O83746) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 609

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 543 DIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           ++DL A+A+ T G+SG D+  +   A   A+
Sbjct: 331 EVDLKAVARITGGYSGADLANVVNEAALLAV 361

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>Y802_XYLFT (Q87D84) UPF0149 protein PD0802|
          Length = 185

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
 Frame = +1

Query: 229 PELAAESTGLLQSLG------KGLVLADVGVAHTPAG-ILHRLLEVGSSDL 360
           PEL    +GLL   G        ++LAD GVA  P G +L RL +  +S L
Sbjct: 27  PELHGSLSGLLAGGGCNGPDWLAMILADAGVAAPPKGSVLERLYQATASQL 77

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>PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 546 KDIDLSALAKYTQGFSGDDIXEICQRACKYAI 451
           K++DL  +A+ T+G SG D+  I   A  +AI
Sbjct: 330 KNVDLRVIAEITEGASGADLKAIATEAGMFAI 361

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>SPG7_HUMAN (Q9UQ90) Paraplegin (EC 3.4.24.-) (Spastic paraplegia protein 7)|
          Length = 795

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 525 LAKYTQGFSGDDIXEICQRACKYA 454
           LA+ T GFSG DI  IC  A  +A
Sbjct: 509 LAELTPGFSGADIANICNEAALHA 532


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,042,105
Number of Sequences: 219361
Number of extensions: 817778
Number of successful extensions: 2331
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 2235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2315
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result