>TMP14_ARATH (Q8LCA1) Thylakoid membrane phosphoprotein 14 kDa, chloroplast|
           precursor
          Length = 174

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 35/101 (34%), Positives = 55/101 (54%)
 Frame = -1

Query: 595 PGAAQDSSGASTESVVKYVKSSFNTTEDIFALAGIGFASIAAFWASMMLVGVIDKLPVLP 416
           P    ++       +VK  + ++   +D +A+  + FA + A W S  ++  ID+LP++P
Sbjct: 72  PATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVP 131

Query: 415 LFFELIGIAVAWWFIYGNLLFKPDRARFLENIKSSVSRILG 293
              EL+GI    WF Y NL+FKPDR    E +KS+   ILG
Sbjct: 132 GVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILG 172

>SYV_ANASP (Q8YX97) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
            (ValRS)
          Length = 1014

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = -1

Query: 496  GIGFASIAAFWASMMLVGVIDKLPVLPLFFELIGIAVAWWFIYGNLLFKPDRARFL 329
            G+  A +     ++ +   +D +P L  FFE++G+  + WF+  NLL  P R RFL
Sbjct: 849  GLVIAGLVFLRVALAVADTVDNVPFLGTFFEIVGLGYSAWFVTRNLLSTPARKRFL 904

>ABF2_BACOV (Q59219) Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) (Arabinosidase|
           2)
          Length = 514

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = +2

Query: 221 MFLTGPKKMYVLGRMYFVFAVKLLPQDSRY*AFDVLQEPCSVRLEEEVPI 370
           M LT  K+M VL   Y+VF +  + QD+ Y   D+  E  SVR    VP+
Sbjct: 374 MILTKDKEM-VLTPTYYVFKMYKVHQDATYLPIDLTCEKMSVRDNRTVPM 422

>TRME_LEPIN (P97043) Probable tRNA modification GTPase trmE|
          Length = 456

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +3

Query: 33  VLRKSKPNALSISTSFLLSKN*F 101
           ++R S P AL+IS+SFL SKN F
Sbjct: 19  IIRMSGPEALTISSSFLFSKNKF 41

>TRME_LEPIC (Q72VY6) tRNA modification GTPase trmE|
          Length = 456

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +3

Query: 33  VLRKSKPNALSISTSFLLSKN*F 101
           ++R S P AL+IS+SFL SKN F
Sbjct: 19  IIRMSGPEALTISSSFLFSKNKF 41

>DOP1_EMENI (Q9Y7B3) Protein dopey|
          Length = 1858

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +3

Query: 456 MEAQNAAIDAKPIPARANMSSVVLKEL 536
           + A NA  DAK IP R N+  VVLK+L
Sbjct: 648 ISAVNACNDAKSIPERLNLLIVVLKKL 674

>PSBK_MARPO (P10348) Photosystem II reaction center protein K precursor|
           (PSII-K)
          Length = 55

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -1

Query: 517 EDIFALAGIGFASIAAFWASMMLVGVIDKLPVLPLFFELIGIAVAW 380
           E+ F L GI FA +   ++  +   ++D +P++PLFF L  +A  W
Sbjct: 7   ENAFYLNGITFAKLPEAYS--IFDPIVDVMPIIPLFFFL--LAFVW 48

>PANE_PYRAB (Q9V0N0) Putative 2-dehydropantoate 2-reductase (EC 1.1.1.169)|
           (Ketopantoate reductase) (KPA reductase) (KPR)
          Length = 300

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 314 AFDVLQEPCSVRLEEEVPIDKPPCNCYSD*FKEKREN 424
           A +V++E C V L+  +  D PP + +    ++ REN
Sbjct: 210 AMEVVKEGCRVALQNGIEFDVPPMDLFFQTLEQTREN 246

>LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3)|
          Length = 367

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
 Frame = -3

Query: 509 ICSSGYRLCINCGI-------LGFHDACWGHRQAPCSPSFL*TNRNSSCMV 378
           +C  G  +C +CG+       L  +D CW  R   CS       R++SC +
Sbjct: 88  VCPPGKCVCSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYI 138

>ENH3_HUMAN (Q9N2J8) HERV-H_2q24.1 provirus ancestral Env polyprotein precursor|
           (Envelope polyprotein) (Env protein HERV-H/p59)
           (HERV-H/env59) [Contains: Surface protein (SU);
           Transmembrane protein (TM)]
          Length = 555

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 117 SSFATRRL*PVQEIAYYIYRTNNGDADASHEPTA 218
           +SF +  L P +E+ Y++ R++    D SH+P A
Sbjct: 96  TSFNSPHLYPPEELIYFLDRSSKTSPDISHQPAA 129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,863,401
Number of Sequences: 219361
Number of extensions: 1859671
Number of successful extensions: 4789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4789
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)