ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags33a12 |
|---|---|
| Clone Library Name | barley_pub |
>CIGR2_ORYSA (Q8GVE1) Chitin-inducible gibberellin-responsive protein 2| Length = 544 Score = 60.8 bits (146), Expect = 3e-09 Identities = 29/46 (63%), Positives = 33/46 (71%) Frame = -1 Query: 632 PYPXSALVNNTIRALLNGYXSYXKLXEKDGVIYLGWKNRKLVVSSA 495 P P S+LVN TIR LL Y KL E+DG +YLGWK+R LVVSSA Sbjct: 497 PSPLSSLVNATIRTLLQSYSDNYKLAERDGALYLGWKSRPLVVSSA 542
>CIGR1_ORYSA (Q69VG1) Chitin-inducible gibberellin-responsive protein 1| Length = 571 Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/46 (52%), Positives = 31/46 (67%) Frame = -1 Query: 632 PYPXSALVNNTIRALLNGYXSYXKLXEKDGVIYLGWKNRKLVVSSA 495 PYP S+ VN+ IR LL Y L EKDG + LGW++RKL+ +SA Sbjct: 524 PYPLSSYVNSVIRKLLACYSDKYTLDEKDGAMLLGWRSRKLISASA 569
>DWRF8_MAIZE (Q9ST48) DELLA protein DWARF8 (Protein dwarf-8)| Length = 630 Score = 33.5 bits (75), Expect = 0.54 Identities = 17/39 (43%), Positives = 24/39 (61%) Frame = -1 Query: 605 NTIRALLNGYXSYXKLXEKDGVIYLGWKNRKLVVSSAXR 489 +T+ AL G Y ++ EKDG + LGW R L+ +SA R Sbjct: 586 STLLALFAGGDGY-RVEEKDGCLTLGWHTRPLIATSAWR 623
>SLN1_HORVU (Q8W127) DELLA protein SLN1 (Slender protein 1)| Length = 618 Score = 33.1 bits (74), Expect = 0.71 Identities = 17/39 (43%), Positives = 24/39 (61%) Frame = -1 Query: 605 NTIRALLNGYXSYXKLXEKDGVIYLGWKNRKLVVSSAXR 489 +T+ AL G Y K+ EK+G + LGW R L+ +SA R Sbjct: 577 STLLALFAGGDGY-KVEEKEGCLTLGWHTRPLIATSAWR 614
>RHT1_WHEAT (Q9ST59) DELLA protein RHT-1 (Reduced height protein 1) (Protein| Rht-B1/Rht-D1) Length = 623 Score = 33.1 bits (74), Expect = 0.71 Identities = 17/39 (43%), Positives = 24/39 (61%) Frame = -1 Query: 605 NTIRALLNGYXSYXKLXEKDGVIYLGWKNRKLVVSSAXR 489 +T+ AL G Y K+ EK+G + LGW R L+ +SA R Sbjct: 582 STLLALFAGGDGY-KVEEKEGCLTLGWHTRPLIATSAWR 619
>SLR1_ORYSA (Q7G7J6) DELLA protein SLR1 (Protein SLENDER RICE1) (Gibberellic| acid-insensitive mutant protein) (OsGAI) Length = 625 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/39 (41%), Positives = 24/39 (61%) Frame = -1 Query: 605 NTIRALLNGYXSYXKLXEKDGVIYLGWKNRKLVVSSAXR 489 +T+ AL G Y ++ EK+G + LGW R L+ +SA R Sbjct: 584 STLLALFAGGDGY-RVEEKEGCLTLGWHTRPLIATSAWR 621
>GAI_ARATH (Q9LQT8) DELLA protein GAI (Gibberellic acid-insensitive mutant| protein) (Restoration of growth on ammonia protein 2) Length = 533 Score = 31.6 bits (70), Expect = 2.1 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = -1 Query: 593 ALLNGYXSYXKLXEKDGVIYLGWKNRKLVVSSA 495 AL NG Y ++ E DG + LGW R L+ +SA Sbjct: 496 ALFNGGEGY-RVEESDGCLMLGWHTRPLIATSA 527
>UHPT_SHIFL (P0AGC2) Hexose phosphate transport protein| Length = 463 Score = 31.2 bits (69), Expect = 2.7 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +1 Query: 325 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 405 C+ + W PR K+ F G WN SH+L Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170
>UHPT_SALTY (P27670) Hexose phosphate transport protein| Length = 463 Score = 31.2 bits (69), Expect = 2.7 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +1 Query: 325 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 405 C+ + W PR K+ F G WN SH+L Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170
>UHPT_ECOLI (P0AGC0) Hexose phosphate transport protein| Length = 463 Score = 31.2 bits (69), Expect = 2.7 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +1 Query: 325 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 405 C+ + W PR K+ F G WN SH+L Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170
>UHPT_ECO57 (P0AGC1) Hexose phosphate transport protein| Length = 463 Score = 31.2 bits (69), Expect = 2.7 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +1 Query: 325 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 405 C+ + W PR K+ F G WN SH+L Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170
>FA26B_RAT (Q5RJQ8) Protein FAM26B| Length = 323 Score = 30.0 bits (66), Expect = 6.0 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 425 NPRWNLISECEFHNPKNC 372 N WNL++EC++ KNC Sbjct: 77 NHTWNLVAECQYRRAKNC 94
>FA26B_MOUSE (Q8VEC4) Protein FAM26B| Length = 323 Score = 30.0 bits (66), Expect = 6.0 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 425 NPRWNLISECEFHNPKNC 372 N WNL++EC++ KNC Sbjct: 77 NHTWNLVAECQYRRAKNC 94 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,534,217 Number of Sequences: 219361 Number of extensions: 1866804 Number of successful extensions: 3829 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3726 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3829 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
