ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags33a08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O08, full insert sequence Length = 1417 Score = 737 bits (372), Expect = 0.0 Identities = 522/572 (91%) Strand = Plus / Minus Query: 124 ggtgtgtctgatgacaatggccctaagatgccctctgagctgagagacaatccactctct 183 |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||| Sbjct: 1176 ggtgtgtctgatgataatggccctaagatgccctctgaactgagagttaatccactctca 1117 Query: 184 ggctggaatcttaacatgtcggcacgagccattgcctctgcttgagctattctctgcctg 243 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 1116 ggctggaatcttaacatatcagcacgagccattgcctctgcttgagctatcctctgcctg 1057 Query: 244 aatatctgcgccatctcatcagccttctcaaaaaccagcttcgggttacgaatcatgtca 303 |||||||| |||||||||||||||||||||||||| ||||| || || |||||||||||| Sbjct: 1056 aatatctgagccatctcatcagccttctcaaaaacaagctttggattgcgaatcatgtca 997 Query: 304 ccaggcgttggctccagcttctttgtagaaaggctaacccggcccctttcacgatcatgg 363 ||||| || ||||| ||||| || |||||||| ||||| ||||| |||||||| |||||| Sbjct: 996 ccaggtgtcggctcaagctttttagtagaaagactaacacggcctctttcacggtcatgg 937 Query: 364 cttagaatcataaccttgagagtatcccctggttgaagaactgtcgagatatctgcaaca 423 |||||||||||||||||||| ||||| |||||||| |||||||||||||| || |||||| Sbjct: 936 cttagaatcataaccttgagcgtatctcctggttgcagaactgtcgagatgtccgcaaca 877 Query: 424 cggtcatgactaatttggctgacatgcagaagtccattgattccaccgatatcgatgaag 483 |||||||||||||| ||||||||||| ||||| |||||||||||||| || ||||| || Sbjct: 876 cggtcatgactaatctggctgacatggagaaggccattgattccaccaatgtcgataaat 817 Query: 484 gcaccataaggttttaggctttcaacagttcccaaaacaactgaaccaataccaagctgg 543 |||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||| Sbjct: 816 gcaccataaggtttcaggctctcgacagttcccaagacaactgaaccaataccaagctga 757 Query: 544 gcttggctgtcggccattgccttgcgattactgaggacaagcctaccttgctcctcatcg 603 ||||| || || |||||||||||||| ||||||||||||||||| ||||| ||||||||| Sbjct: 756 gcttgactatctgccattgccttgcggttactgaggacaagcctgccttgttcctcatcg 697 Query: 604 acctccacaaacttcagaggtagctctttgtcaagcaactcttcagcagttgttttcgat 663 ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| Sbjct: 696 acctccacaaacttcagaggtagttctttgtcaagcagttcttcagcagttgatttcgat 637 Query: 664 gacacttgtgaaaatggaacaaatgccttaag 695 |||||||||||||||||||||||| ||||||| Sbjct: 636 gacacttgtgaaaatggaacaaatcccttaag 605
>gb|AY105404.1| Zea mays PCO138567 mRNA sequence Length = 1498 Score = 642 bits (324), Expect = 0.0 Identities = 492/548 (89%) Strand = Plus / Minus Query: 136 gacaatggccctaagatgccctctgagctgagagacaatccactctctggctggaatctt 195 |||||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||| Sbjct: 1253 gacaatggtcctaagatgccctctgaactgagggtcaatccactctctggctggaatctc 1194 Query: 196 aacatgtcggcacgagccattgcctctgcttgagctattctctgcctgaatatctgcgcc 255 |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 1193 aacatgtcagcacgagccatagcctctgcctgagctattctctgcctgaatatctgagcc 1134 Query: 256 atctcatcagccttctcaaaaaccagcttcgggttacgaatcatgtcaccaggcgttggc 315 |||||||||||||||||||| || ||||| || || || |||||||||||||| |||||| Sbjct: 1133 atctcatcagccttctcaaacacaagcttgggattgcggatcatgtcaccaggtgttggc 1074 Query: 316 tccagcttctttgtagaaaggctaacccggcccctttcacgatcatggcttagaatcata 375 || |||||||| ||||||||||| || ||||| |||||||| |||||||| || |||||| Sbjct: 1073 tcaagcttcttagtagaaaggctgactcggcctctttcacggtcatggctcagtatcata 1014 Query: 376 accttgagagtatcccctggttgaagaactgtcgagatatctgcaacacggtcatgacta 435 |||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 1013 accttgagggtatctcctggttgcagaactgttgagatatctgcaacacggtcatgacta 954 Query: 436 atttggctgacatgcagaagtccattgattccaccgatatcgatgaaggcaccataaggt 495 || ||||| ||||| ||||| || |||||||||||||| || |||||||| ||||||||| Sbjct: 953 atctggctcacatggagaaggccgttgattccaccgatgtcaatgaaggcgccataaggt 894 Query: 496 tttaggctttcaacagttcccaaaacaactgaaccaataccaagctgggcttggctgtcg 555 |||||||| || ||||||||||| |||||||| |||||||| |||||||| || || || Sbjct: 893 tttaggctctctacagttcccaagacaactgatccaatacctagctgggcctgactatct 834 Query: 556 gccattgccttgcgattactgaggacaagcctaccttgctcctcatcgacctccacaaac 615 |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct: 833 gccattgccttgcgattactgaggacaagcctgccttgttcctcatcgacctctacaaac 774 Query: 616 ttcagaggtagctctttgtcaagcaactcttcagcagttgttttcgatgacacttgtgaa 675 |||||||| | ||||| ||||||| |||||| || |||||||||||||||||||| ||| Sbjct: 773 ttcagaggcaattctttctcaagcagctcttcggcggttgttttcgatgacacttgcgaa 714 Query: 676 aatggaac 683 |||||||| Sbjct: 713 aatggaac 706
>dbj|AK061971.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-H07, full insert sequence Length = 523 Score = 379 bits (191), Expect = e-102 Identities = 272/299 (90%) Strand = Plus / Minus Query: 124 ggtgtgtctgatgacaatggccctaagatgccctctgagctgagagacaatccactctct 183 |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||| Sbjct: 299 ggtgtgtctgatgataatggccctaagatgccctctgaactgagagttaatccactctca 240 Query: 184 ggctggaatcttaacatgtcggcacgagccattgcctctgcttgagctattctctgcctg 243 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 239 ggctggaatcttaacatatcagcacgagccattgcctctgcttgagctatcctctgcctg 180 Query: 244 aatatctgcgccatctcatcagccttctcaaaaaccagcttcgggttacgaatcatgtca 303 |||||||| |||||||||||||||||||||||||| ||||| || || |||||||||||| Sbjct: 179 aatatctgagccatctcatcagccttctcaaaaacaagctttggattgcgaatcatgtca 120 Query: 304 ccaggcgttggctccagcttctttgtagaaaggctaacccggcccctttcacgatcatgg 363 ||||| || ||||| ||||| || |||||||| ||||| ||||| |||||||| |||||| Sbjct: 119 ccaggtgtcggctcaagctttttagtagaaagactaacacggcctctttcacggtcatgg 60 Query: 364 cttagaatcataaccttgagagtatcccctggttgaagaactgtcgagatatctgcaac 422 |||||||||||||||||||| ||||| |||||||| |||||||||||||| || ||||| Sbjct: 59 cttagaatcataaccttgagcgtatctcctggttgcagaactgtcgagatgtccgcaac 1
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 351 bits (177), Expect = 2e-93 Identities = 258/285 (90%) Strand = Plus / Plus Query: 376 accttgagagtatcccctggttgaagaactgtcgagatatctgcaacacggtcatgacta 435 |||||||| ||||| |||||||| |||||||||||||| || |||||||||||||||||| Sbjct: 11325404 accttgagcgtatctcctggttgcagaactgtcgagatgtccgcaacacggtcatgacta 11325463 Query: 436 atttggctgacatgcagaagtccattgattccaccgatatcgatgaaggcaccataaggt 495 || ||||||||||| ||||| |||||||||||||| || ||||| || |||||||||||| Sbjct: 11325464 atctggctgacatggagaaggccattgattccaccaatgtcgataaatgcaccataaggt 11325523 Query: 496 tttaggctttcaacagttcccaaaacaactgaaccaataccaagctgggcttggctgtcg 555 || ||||| || ||||||||||| ||||||||||||||||||||||| ||||| || || Sbjct: 11325524 ttcaggctctcgacagttcccaagacaactgaaccaataccaagctgagcttgactatct 11325583 Query: 556 gccattgccttgcgattactgaggacaagcctaccttgctcctcatcgacctccacaaac 615 |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 11325584 gccattgccttgcggttactgaggacaagcctgccttgttcctcatcgacctccacaaac 11325643 Query: 616 ttcagaggtagctctttgtcaagcaactcttcagcagttgttttc 660 ||||||||||| ||||||||||||| ||||||||||||| |||| Sbjct: 11325644 ttcagaggtagttctttgtcaagcagttcttcagcagttgatttc 11325688 Score = 137 bits (69), Expect = 5e-29 Identities = 81/85 (95%) Strand = Plus / Plus Query: 184 ggctggaatcttaacatgtcggcacgagccattgcctctgcttgagctattctctgcctg 243 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 11325043 ggctggaatcttaacatatcagcacgagccattgcctctgcttgagctatcctctgcctg 11325102 Query: 244 aatatctgcgccatctcatcagcct 268 |||||||| |||||||||||||||| Sbjct: 11325103 aatatctgagccatctcatcagcct 11325127 Score = 123 bits (62), Expect = 8e-25 Identities = 101/114 (88%) Strand = Plus / Plus Query: 266 ccttctcaaaaaccagcttcgggttacgaatcatgtcaccaggcgttggctccagcttct 325 ||||||||||||| ||||| || || ||||||||||||||||| || ||||| ||||| | Sbjct: 11325208 ccttctcaaaaacaagctttggattgcgaatcatgtcaccaggtgtcggctcaagctttt 11325267 Query: 326 ttgtagaaaggctaacccggcccctttcacgatcatggcttagaatcataacct 379 | |||||||| ||||| ||||| |||||||| |||||||||||||||||||||| Sbjct: 11325268 tagtagaaagactaacacggcctctttcacggtcatggcttagaatcataacct 11325321 Score = 83.8 bits (42), Expect = 7e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 124 ggtgtgtctgatgacaatggccctaagatgccctctgagctgagagacaatccactct 181 |||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| Sbjct: 11324867 ggtgtgtctgatgataatggccctaagatgccctctgaactgagagttaatccactct 11324924 Score = 63.9 bits (32), Expect = 7e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 660 cgatgacacttgtgaaaatggaacaaatgccttaag 695 |||||||||||||||||||||||||||| ||||||| Sbjct: 11325906 cgatgacacttgtgaaaatggaacaaatcccttaag 11325941 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 295 atcatgtcaccaggcgttggctccagc 321 |||||||||| |||||||||||||||| Sbjct: 32266542 atcatgtcacaaggcgttggctccagc 32266516 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 273 aaaaaccagcttcgggttacgaatc 297 ||||||||||||| ||||||||||| Sbjct: 22134101 aaaaaccagcttctggttacgaatc 22134077
>gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0085H08, from chromosome 3, complete sequence Length = 130656 Score = 351 bits (177), Expect = 2e-93 Identities = 258/285 (90%) Strand = Plus / Plus Query: 376 accttgagagtatcccctggttgaagaactgtcgagatatctgcaacacggtcatgacta 435 |||||||| ||||| |||||||| |||||||||||||| || |||||||||||||||||| Sbjct: 104357 accttgagcgtatctcctggttgcagaactgtcgagatgtccgcaacacggtcatgacta 104416 Query: 436 atttggctgacatgcagaagtccattgattccaccgatatcgatgaaggcaccataaggt 495 || ||||||||||| ||||| |||||||||||||| || ||||| || |||||||||||| Sbjct: 104417 atctggctgacatggagaaggccattgattccaccaatgtcgataaatgcaccataaggt 104476 Query: 496 tttaggctttcaacagttcccaaaacaactgaaccaataccaagctgggcttggctgtcg 555 || ||||| || ||||||||||| ||||||||||||||||||||||| ||||| || || Sbjct: 104477 ttcaggctctcgacagttcccaagacaactgaaccaataccaagctgagcttgactatct 104536 Query: 556 gccattgccttgcgattactgaggacaagcctaccttgctcctcatcgacctccacaaac 615 |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 104537 gccattgccttgcggttactgaggacaagcctgccttgttcctcatcgacctccacaaac 104596 Query: 616 ttcagaggtagctctttgtcaagcaactcttcagcagttgttttc 660 ||||||||||| ||||||||||||| ||||||||||||| |||| Sbjct: 104597 ttcagaggtagttctttgtcaagcagttcttcagcagttgatttc 104641 Score = 137 bits (69), Expect = 5e-29 Identities = 81/85 (95%) Strand = Plus / Plus Query: 184 ggctggaatcttaacatgtcggcacgagccattgcctctgcttgagctattctctgcctg 243 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 103996 ggctggaatcttaacatatcagcacgagccattgcctctgcttgagctatcctctgcctg 104055 Query: 244 aatatctgcgccatctcatcagcct 268 |||||||| |||||||||||||||| Sbjct: 104056 aatatctgagccatctcatcagcct 104080 Score = 123 bits (62), Expect = 8e-25 Identities = 101/114 (88%) Strand = Plus / Plus Query: 266 ccttctcaaaaaccagcttcgggttacgaatcatgtcaccaggcgttggctccagcttct 325 ||||||||||||| ||||| || || ||||||||||||||||| || ||||| ||||| | Sbjct: 104161 ccttctcaaaaacaagctttggattgcgaatcatgtcaccaggtgtcggctcaagctttt 104220 Query: 326 ttgtagaaaggctaacccggcccctttcacgatcatggcttagaatcataacct 379 | |||||||| ||||| ||||| |||||||| |||||||||||||||||||||| Sbjct: 104221 tagtagaaagactaacacggcctctttcacggtcatggcttagaatcataacct 104274 Score = 83.8 bits (42), Expect = 7e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 124 ggtgtgtctgatgacaatggccctaagatgccctctgagctgagagacaatccactct 181 |||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| Sbjct: 103820 ggtgtgtctgatgataatggccctaagatgccctctgaactgagagttaatccactct 103877 Score = 63.9 bits (32), Expect = 7e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 660 cgatgacacttgtgaaaatggaacaaatgccttaag 695 |||||||||||||||||||||||||||| ||||||| Sbjct: 104859 cgatgacacttgtgaaaatggaacaaatcccttaag 104894
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 351 bits (177), Expect = 2e-93 Identities = 258/285 (90%) Strand = Plus / Plus Query: 376 accttgagagtatcccctggttgaagaactgtcgagatatctgcaacacggtcatgacta 435 |||||||| ||||| |||||||| |||||||||||||| || |||||||||||||||||| Sbjct: 11322167 accttgagcgtatctcctggttgcagaactgtcgagatgtccgcaacacggtcatgacta 11322226 Query: 436 atttggctgacatgcagaagtccattgattccaccgatatcgatgaaggcaccataaggt 495 || ||||||||||| ||||| |||||||||||||| || ||||| || |||||||||||| Sbjct: 11322227 atctggctgacatggagaaggccattgattccaccaatgtcgataaatgcaccataaggt 11322286 Query: 496 tttaggctttcaacagttcccaaaacaactgaaccaataccaagctgggcttggctgtcg 555 || ||||| || ||||||||||| ||||||||||||||||||||||| ||||| || || Sbjct: 11322287 ttcaggctctcgacagttcccaagacaactgaaccaataccaagctgagcttgactatct 11322346 Query: 556 gccattgccttgcgattactgaggacaagcctaccttgctcctcatcgacctccacaaac 615 |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 11322347 gccattgccttgcggttactgaggacaagcctgccttgttcctcatcgacctccacaaac 11322406 Query: 616 ttcagaggtagctctttgtcaagcaactcttcagcagttgttttc 660 ||||||||||| ||||||||||||| ||||||||||||| |||| Sbjct: 11322407 ttcagaggtagttctttgtcaagcagttcttcagcagttgatttc 11322451 Score = 137 bits (69), Expect = 5e-29 Identities = 81/85 (95%) Strand = Plus / Plus Query: 184 ggctggaatcttaacatgtcggcacgagccattgcctctgcttgagctattctctgcctg 243 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 11321806 ggctggaatcttaacatatcagcacgagccattgcctctgcttgagctatcctctgcctg 11321865 Query: 244 aatatctgcgccatctcatcagcct 268 |||||||| |||||||||||||||| Sbjct: 11321866 aatatctgagccatctcatcagcct 11321890 Score = 123 bits (62), Expect = 8e-25 Identities = 101/114 (88%) Strand = Plus / Plus Query: 266 ccttctcaaaaaccagcttcgggttacgaatcatgtcaccaggcgttggctccagcttct 325 ||||||||||||| ||||| || || ||||||||||||||||| || ||||| ||||| | Sbjct: 11321971 ccttctcaaaaacaagctttggattgcgaatcatgtcaccaggtgtcggctcaagctttt 11322030 Query: 326 ttgtagaaaggctaacccggcccctttcacgatcatggcttagaatcataacct 379 | |||||||| ||||| ||||| |||||||| |||||||||||||||||||||| Sbjct: 11322031 tagtagaaagactaacacggcctctttcacggtcatggcttagaatcataacct 11322084 Score = 83.8 bits (42), Expect = 7e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 124 ggtgtgtctgatgacaatggccctaagatgccctctgagctgagagacaatccactct 181 |||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| Sbjct: 11321630 ggtgtgtctgatgataatggccctaagatgccctctgaactgagagttaatccactct 11321687 Score = 63.9 bits (32), Expect = 7e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 660 cgatgacacttgtgaaaatggaacaaatgccttaag 695 |||||||||||||||||||||||||||| ||||||| Sbjct: 11322669 cgatgacacttgtgaaaatggaacaaatcccttaag 11322704 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 295 atcatgtcaccaggcgttggctccagc 321 |||||||||| |||||||||||||||| Sbjct: 32357054 atcatgtcacaaggcgttggctccagc 32357028 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 273 aaaaaccagcttcgggttacgaatc 297 ||||||||||||| ||||||||||| Sbjct: 22127130 aaaaaccagcttctggttacgaatc 22127106
>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005J15, complete sequence Length = 159270 Score = 351 bits (177), Expect = 2e-93 Identities = 258/285 (90%) Strand = Plus / Plus Query: 376 accttgagagtatcccctggttgaagaactgtcgagatatctgcaacacggtcatgacta 435 |||||||| ||||| |||||||| |||||||||||||| || |||||||||||||||||| Sbjct: 33701 accttgagcgtatctcctggttgcagaactgtcgagatgtccgcaacacggtcatgacta 33760 Query: 436 atttggctgacatgcagaagtccattgattccaccgatatcgatgaaggcaccataaggt 495 || ||||||||||| ||||| |||||||||||||| || ||||| || |||||||||||| Sbjct: 33761 atctggctgacatggagaaggccattgattccaccaatgtcgataaatgcaccataaggt 33820 Query: 496 tttaggctttcaacagttcccaaaacaactgaaccaataccaagctgggcttggctgtcg 555 || ||||| || ||||||||||| ||||||||||||||||||||||| ||||| || || Sbjct: 33821 ttcaggctctcgacagttcccaagacaactgaaccaataccaagctgagcttgactatct 33880 Query: 556 gccattgccttgcgattactgaggacaagcctaccttgctcctcatcgacctccacaaac 615 |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 33881 gccattgccttgcggttactgaggacaagcctgccttgttcctcatcgacctccacaaac 33940 Query: 616 ttcagaggtagctctttgtcaagcaactcttcagcagttgttttc 660 ||||||||||| ||||||||||||| ||||||||||||| |||| Sbjct: 33941 ttcagaggtagttctttgtcaagcagttcttcagcagttgatttc 33985 Score = 137 bits (69), Expect = 5e-29 Identities = 81/85 (95%) Strand = Plus / Plus Query: 184 ggctggaatcttaacatgtcggcacgagccattgcctctgcttgagctattctctgcctg 243 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 33340 ggctggaatcttaacatatcagcacgagccattgcctctgcttgagctatcctctgcctg 33399 Query: 244 aatatctgcgccatctcatcagcct 268 |||||||| |||||||||||||||| Sbjct: 33400 aatatctgagccatctcatcagcct 33424 Score = 123 bits (62), Expect = 8e-25 Identities = 101/114 (88%) Strand = Plus / Plus Query: 266 ccttctcaaaaaccagcttcgggttacgaatcatgtcaccaggcgttggctccagcttct 325 ||||||||||||| ||||| || || ||||||||||||||||| || ||||| ||||| | Sbjct: 33505 ccttctcaaaaacaagctttggattgcgaatcatgtcaccaggtgtcggctcaagctttt 33564 Query: 326 ttgtagaaaggctaacccggcccctttcacgatcatggcttagaatcataacct 379 | |||||||| ||||| ||||| |||||||| |||||||||||||||||||||| Sbjct: 33565 tagtagaaagactaacacggcctctttcacggtcatggcttagaatcataacct 33618 Score = 83.8 bits (42), Expect = 7e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 124 ggtgtgtctgatgacaatggccctaagatgccctctgagctgagagacaatccactct 181 |||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| Sbjct: 33164 ggtgtgtctgatgataatggccctaagatgccctctgaactgagagttaatccactct 33221 Score = 63.9 bits (32), Expect = 7e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 660 cgatgacacttgtgaaaatggaacaaatgccttaag 695 |||||||||||||||||||||||||||| ||||||| Sbjct: 34203 cgatgacacttgtgaaaatggaacaaatcccttaag 34238
>gb|BT014318.1| Lycopersicon esculentum clone 133571F, mRNA sequence Length = 1442 Score = 242 bits (122), Expect = 1e-60 Identities = 377/462 (81%) Strand = Plus / Minus Query: 171 caatccactctctggctggaatcttaacatgtcggcacgagccattgcctctgcttgagc 230 |||||||||||| ||||||||||| | ||| || ||||| ||||| || || ||||| || Sbjct: 1181 caatccactctcaggctggaatctcagcatatctgcacgggccatggcttcagcttgggc 1122 Query: 231 tattctctgcctgaatatctgcgccatctcatcagccttctcaaaaaccagcttcgggtt 290 ||||||||||||||| |||| |||||||| |||||||||||||| || ||||| || || Sbjct: 1121 aattctctgcctgaatgtctgggccatctcttcagccttctcaaagacaagctttggatt 1062 Query: 291 acgaatcatgtcaccaggcgttggctccagcttctttgtagaaaggctaacccggcccct 350 ||||||||||||||||| || ||||| |||||||||||||||||||| || || || || Sbjct: 1061 gcgaatcatgtcaccaggtgtaggctctagcttctttgtagaaaggctcactcgacctct 1002 Query: 351 ttcacgatcatggcttagaatcataaccttgagagtatcccctggttgaagaactgtcga 410 ||||| |||||||| | ||||| ||||| || || || || || || || ||||| | Sbjct: 1001 ctcacggtcatggctcaatatcatgaccttaagtgtgtcaccaggctggaggactgttgc 942 Query: 411 gatatctgcaacacggtcatgactaatttggctgacatgcagaagtccattgattccacc 470 ||||||| ||||| ||||||||||| ||||| ||||| ||||| |||||||| ||||| Sbjct: 941 aatatctgagacacgatcatgactaatctggctcacatgaagaagaccattgatcccacc 882 Query: 471 gatatcgatgaaggcaccataaggttttaggctttcaacagttcccaaaacaactgaacc 530 || || |||||||||||||| ||||| | ||| | |||| |||| | ||||||||| || Sbjct: 881 aatgtcaatgaaggcaccatatggtttcaagctctgaacacttccaagaacaactgagcc 822 Query: 531 aataccaagctgggcttggctgtcggccattgccttgcgattactgaggacaagcctacc 590 || || | || || || || || ||||| ||||| ||||| ||||| ||||| || Sbjct: 821 tatgcccaattgtgcctgactatcagccatggccttacgattgctgagaacaagtctcga 762 Query: 591 ttgctcctcatcgacctccacaaacttcagaggtagctcttt 632 |||||| ||||| ||||| |||||||||||||| |||||||| Sbjct: 761 ttgctcttcatcaacctcaacaaacttcagaggaagctcttt 720
>gb|M82923.1|SPIRPS1X Spinacia oleracea chloroplast ribosomal protein S1 (rpS1) mRNA, complete cds Length = 1481 Score = 234 bits (118), Expect = 3e-58 Identities = 400/494 (80%) Strand = Plus / Minus Query: 145 cctaagatgccctctgagctgagagacaatccactctctggctggaatcttaacatgtcg 204 |||||||| || ||||||||||||| | || ||||| ||||||||||| | |||||| Sbjct: 1253 cctaagattccatctgagctgagagtgagaccgctctcaggctggaatctgagcatgtca 1194 Query: 205 gcacgagccattgcctctgcttgagctattctctgcctgaatatctgcgccatctcatca 264 ||||||||||| ||||||||||| || || || || |||||| | || |||||||| ||| Sbjct: 1193 gcacgagccatggcctctgcttgtgcaatcctttgtctgaatgtttgagccatctcctca 1134 Query: 265 gccttctcaaaaaccagcttcgggttacgaatcatgtcaccaggcgttggctccagcttc 324 ||||||||||| || |||||||| |||||||||||||||||||| || || |||| |||| Sbjct: 1133 gccttctcaaagacaagcttcggattacgaatcatgtcaccaggagtaggttccaacttc 1074 Query: 325 tttgtagaaaggctaacccggcccctttcacgatcatggcttagaatcataaccttgaga 384 ||||| || || || |||| || |||||||| |||||||| | |||||| ||||| | | Sbjct: 1073 tttgtcgacagactcaccctacctctttcacggtcatggctcaaaatcatgaccttcaaa 1014 Query: 385 gtatcccctggttgaagaactgtcgagatatctgcaacacggtcatgactaatttggctg 444 || || || ||||| || || || | ||||| | ||||| |||||||| ||||| || Sbjct: 1013 gtgtcaccaggttgtaggacagttgcaatatccgagacacgatcatgactgatttgacta 954 Query: 445 acatgcagaagtccattgattccaccgatatcgatgaaggcaccataaggttttaggctt 504 ||||| ||||| ||||| |||||||| ||||| || |||||||| |||||||| || | Sbjct: 953 acatgaagaagcccattaattccaccaatatcaataaaggcaccgtaaggtttaagagat 894 Query: 505 tcaacagttcccaaaacaactgaaccaataccaagctgggcttggctgtcggccattgcc 564 | ||||||||| |||||||| |||||||||||||| || |||||||| ||||| ||| Sbjct: 893 tgaacagttcctgtgacaactgatccaataccaagctgtgcctggctgtcagccatggcc 834 Query: 565 ttgcgattactgaggacaagcctaccttgctcctcatcgacctccacaaacttcagaggt 624 ||||| ||||| | || | ||| ||| |||||||| ||||| |||||||| ||||| Sbjct: 833 ttgcggttactcattaccaacctggattgttcctcatcaacctcaacaaactttagaggg 774 Query: 625 agctctttgtcaag 638 | |||||| ||||| Sbjct: 773 atctctttctcaag 760
>ref|NM_180572.1| Arabidopsis thaliana RNA binding / structural constituent of ribosome AT5G30510 mRNA, complete cds Length = 1562 Score = 230 bits (116), Expect = 5e-57 Identities = 380/468 (81%) Strand = Plus / Minus Query: 198 catgtcggcacgagccattgcctctgcttgagctattctctgcctgaatatctgcgccat 257 |||||| ||||||||||| || |||||||| || |||||||| |||||| |||| ||||| Sbjct: 1197 catgtctgcacgagccatggcttctgcttgcgcaattctctgtctgaatgtctgagccat 1138 Query: 258 ctcatcagccttctcaaaaaccagcttcgggttacgaatcatgtcaccaggcgttggctc 317 ||| ||||||||||| || || || || |||||||||||||| |||||||| |||||||| Sbjct: 1137 ctcctcagccttctcgaacacaagttttgggttacgaatcatatcaccaggtgttggctc 1078 Query: 318 cagcttctttgtagaaaggctaacccggcccctttcacgatcatggcttagaatcataac 377 |||||||||||| || || || || | || || ||||| || || || | |||||||| Sbjct: 1077 cagcttctttgtggagagacttactcttcctctgtcacggtcgtgactcaatatcataac 1018 Query: 378 cttgagagtatcccctggttgaagaactgtcgagatatctgcaacacggtcatgactaat 437 ||| | ||| || || || |||||||| || | |||||||| |||||||||||||| || Sbjct: 1017 cttcaaagtgtcaccaggctgaagaacagttgcgatatctgagacacggtcatgacttat 958 Query: 438 ttggctgacatgcagaagtccattgattccaccgatatcgatgaaggcaccataaggttt 497 || |||||||| ||||| |||||||||||||| || || |||||||||||||||||||| Sbjct: 957 ctgactgacatgaagaagcccattgattccaccaatgtcaatgaaggcaccataaggttt 898 Query: 498 taggctttcaacagttcccaaaacaactgaaccaataccaagctgggcttggctgtcggc 557 | ||| | |||| ||| | || || || ||||| |||||||| |||||||| || || Sbjct: 897 caagctctgaacaactccgaggaccacagatccaattccaagctgagcttggctatctgc 838 Query: 558 cattgccttgcgattactgaggacaagcctaccttgctcctcatcgacctccacaaactt 617 | || || || || |||||||||||| | ||| |||||||| |||||||||||||| Sbjct: 837 tacagctttacggttgctgaggacaagctttgtttgttcctcatcaacctccacaaactt 778 Query: 618 cagaggtagctctttgtcaagcaactcttcagcagttgttttcgatga 665 ||||||| ||||| ||||| | ||||||||| | || ||||||||| Sbjct: 777 aagaggtatttctttttcaagaagctcttcagctgctgctttcgatga 730
>gb|AY142540.1| Arabidopsis thaliana putative ribosomal protein S1 (At5g29771) mRNA, complete cds Length = 1282 Score = 230 bits (116), Expect = 5e-57 Identities = 380/468 (81%) Strand = Plus / Minus Query: 198 catgtcggcacgagccattgcctctgcttgagctattctctgcctgaatatctgcgccat 257 |||||| ||||||||||| || |||||||| || |||||||| |||||| |||| ||||| Sbjct: 1122 catgtctgcacgagccatggcttctgcttgcgcaattctctgtctgaatgtctgagccat 1063 Query: 258 ctcatcagccttctcaaaaaccagcttcgggttacgaatcatgtcaccaggcgttggctc 317 ||| ||||||||||| || || || || |||||||||||||| |||||||| |||||||| Sbjct: 1062 ctcctcagccttctcgaacacaagttttgggttacgaatcatatcaccaggtgttggctc 1003 Query: 318 cagcttctttgtagaaaggctaacccggcccctttcacgatcatggcttagaatcataac 377 |||||||||||| || || || || | || || ||||| || || || | |||||||| Sbjct: 1002 cagcttctttgtggagagacttactcttcctctgtcacggtcgtgactcaatatcataac 943 Query: 378 cttgagagtatcccctggttgaagaactgtcgagatatctgcaacacggtcatgactaat 437 ||| | ||| || || || |||||||| || | |||||||| |||||||||||||| || Sbjct: 942 cttcaaagtgtcaccaggctgaagaacagttgcgatatctgagacacggtcatgacttat 883 Query: 438 ttggctgacatgcagaagtccattgattccaccgatatcgatgaaggcaccataaggttt 497 || |||||||| ||||| |||||||||||||| || || |||||||||||||||||||| Sbjct: 882 ctgactgacatgaagaagcccattgattccaccaatgtcaatgaaggcaccataaggttt 823 Query: 498 taggctttcaacagttcccaaaacaactgaaccaataccaagctgggcttggctgtcggc 557 | ||| | |||| ||| | || || || ||||| |||||||| |||||||| || || Sbjct: 822 caagctctgaacaactccgaggaccacagatccaattccaagctgagcttggctatctgc 763 Query: 558 cattgccttgcgattactgaggacaagcctaccttgctcctcatcgacctccacaaactt 617 | || || || || |||||||||||| | ||| |||||||| |||||||||||||| Sbjct: 762 tacagctttacggttgctgaggacaagctttgtttgttcctcatcaacctccacaaactt 703 Query: 618 cagaggtagctctttgtcaagcaactcttcagcagttgttttcgatga 665 ||||||| ||||| ||||| | ||||||||| | || ||||||||| Sbjct: 702 aagaggtatttctttttcaagaagctcttcagctgctgctttcgatga 655
>gb|AF370232.1| Arabidopsis thaliana putative ribosomal protein S1 (At5g29771) mRNA, complete cds Length = 1380 Score = 230 bits (116), Expect = 5e-57 Identities = 380/468 (81%) Strand = Plus / Minus Query: 198 catgtcggcacgagccattgcctctgcttgagctattctctgcctgaatatctgcgccat 257 |||||| ||||||||||| || |||||||| || |||||||| |||||| |||| ||||| Sbjct: 1159 catgtctgcacgagccatggcttctgcttgcgcaattctctgtctgaatgtctgagccat 1100 Query: 258 ctcatcagccttctcaaaaaccagcttcgggttacgaatcatgtcaccaggcgttggctc 317 ||| ||||||||||| || || || || |||||||||||||| |||||||| |||||||| Sbjct: 1099 ctcctcagccttctcgaacacaagttttgggttacgaatcatatcaccaggtgttggctc 1040 Query: 318 cagcttctttgtagaaaggctaacccggcccctttcacgatcatggcttagaatcataac 377 |||||||||||| || || || || | || || ||||| || || || | |||||||| Sbjct: 1039 cagcttctttgtggagagacttactcttcctctgtcacggtcgtgactcaatatcataac 980 Query: 378 cttgagagtatcccctggttgaagaactgtcgagatatctgcaacacggtcatgactaat 437 ||| | ||| || || || |||||||| || | |||||||| |||||||||||||| || Sbjct: 979 cttcaaagtgtcaccaggctgaagaacagttgcgatatctgagacacggtcatgacttat 920 Query: 438 ttggctgacatgcagaagtccattgattccaccgatatcgatgaaggcaccataaggttt 497 || |||||||| ||||| |||||||||||||| || || |||||||||||||||||||| Sbjct: 919 ctgactgacatgaagaagcccattgattccaccaatgtcaatgaaggcaccataaggttt 860 Query: 498 taggctttcaacagttcccaaaacaactgaaccaataccaagctgggcttggctgtcggc 557 | ||| | |||| ||| | || || || ||||| |||||||| |||||||| || || Sbjct: 859 caagctctgaacaactccgaggaccacagatccaattccaagctgagcttggctatctgc 800 Query: 558 cattgccttgcgattactgaggacaagcctaccttgctcctcatcgacctccacaaactt 617 | || || || || |||||||||||| | ||| |||||||| |||||||||||||| Sbjct: 799 tacagctttacggttgctgaggacaagctttgtttgttcctcatcaacctccacaaactt 740 Query: 618 cagaggtagctctttgtcaagcaactcttcagcagttgttttcgatga 665 ||||||| ||||| ||||| | ||||||||| | || ||||||||| Sbjct: 739 aagaggtatttctttttcaagaagctcttcagctgctgctttcgatga 692
>gb|AY059914.1| Arabidopsis thaliana Unknown protein mRNA, complete cds Length = 1443 Score = 230 bits (116), Expect = 5e-57 Identities = 380/468 (81%) Strand = Plus / Minus Query: 198 catgtcggcacgagccattgcctctgcttgagctattctctgcctgaatatctgcgccat 257 |||||| ||||||||||| || |||||||| || |||||||| |||||| |||| ||||| Sbjct: 1179 catgtctgcacgagccatggcttctgcttgcgcaattctctgtctgaatgtctgagccat 1120 Query: 258 ctcatcagccttctcaaaaaccagcttcgggttacgaatcatgtcaccaggcgttggctc 317 ||| ||||||||||| || || || || |||||||||||||| |||||||| |||||||| Sbjct: 1119 ctcctcagccttctcgaacacaagttttgggttacgaatcatatcaccaggtgttggctc 1060 Query: 318 cagcttctttgtagaaaggctaacccggcccctttcacgatcatggcttagaatcataac 377 |||||||||||| || || || || | || || ||||| || || || | |||||||| Sbjct: 1059 cagcttctttgtggagagacttactcttcctctgtcacggtcgtgactcaatatcataac 1000 Query: 378 cttgagagtatcccctggttgaagaactgtcgagatatctgcaacacggtcatgactaat 437 ||| | ||| || || || |||||||| || | |||||||| |||||||||||||| || Sbjct: 999 cttcaaagtgtcaccaggctgaagaacagttgcgatatctgagacacggtcatgacttat 940 Query: 438 ttggctgacatgcagaagtccattgattccaccgatatcgatgaaggcaccataaggttt 497 || |||||||| ||||| |||||||||||||| || || |||||||||||||||||||| Sbjct: 939 ctgactgacatgaagaagcccattgattccaccaatgtcaatgaaggcaccataaggttt 880 Query: 498 taggctttcaacagttcccaaaacaactgaaccaataccaagctgggcttggctgtcggc 557 | ||| | |||| ||| | || || || ||||| |||||||| |||||||| || || Sbjct: 879 caagctctgaacaactccgaggaccacagatccaattccaagctgagcttggctatctgc 820 Query: 558 cattgccttgcgattactgaggacaagcctaccttgctcctcatcgacctccacaaactt 617 | || || || || |||||||||||| | ||| |||||||| |||||||||||||| Sbjct: 819 tacagctttacggttgctgaggacaagctttgtttgttcctcatcaacctccacaaactt 760 Query: 618 cagaggtagctctttgtcaagcaactcttcagcagttgttttcgatga 665 ||||||| ||||| ||||| | ||||||||| | || ||||||||| Sbjct: 759 aagaggtatttctttttcaagaagctcttcagctgctgctttcgatga 712
>gb|AY088230.1| Arabidopsis thaliana clone 4565 mRNA, complete sequence Length = 1488 Score = 230 bits (116), Expect = 5e-57 Identities = 380/468 (81%) Strand = Plus / Minus Query: 198 catgtcggcacgagccattgcctctgcttgagctattctctgcctgaatatctgcgccat 257 |||||| ||||||||||| || |||||||| || |||||||| |||||| |||| ||||| Sbjct: 1198 catgtctgcacgagccatggcttctgcttgcgcaattctctgtctgaatgtctgagccat 1139 Query: 258 ctcatcagccttctcaaaaaccagcttcgggttacgaatcatgtcaccaggcgttggctc 317 ||| ||||||||||| || || || || |||||||||||||| |||||||| |||||||| Sbjct: 1138 ctcctcagccttctcgaacacaagttttgggttacgaatcatatcaccaggtgttggctc 1079 Query: 318 cagcttctttgtagaaaggctaacccggcccctttcacgatcatggcttagaatcataac 377 |||||||||||| || || || || | || || ||||| || || || | |||||||| Sbjct: 1078 cagcttctttgtggagagacttactcttcctctgtcacggtcgtgactcaatatcataac 1019 Query: 378 cttgagagtatcccctggttgaagaactgtcgagatatctgcaacacggtcatgactaat 437 ||| | ||| || || || |||||||| || | |||||||| |||||||||||||| || Sbjct: 1018 cttcaaagtgtcaccaggctgaagaacagttgcgatatctgagacacggtcatgacttat 959 Query: 438 ttggctgacatgcagaagtccattgattccaccgatatcgatgaaggcaccataaggttt 497 || |||||||| ||||| |||||||||||||| || || |||||||||||||||||||| Sbjct: 958 ctgactgacatgaagaagcccattgattccaccaatgtcaatgaaggcaccataaggttt 899 Query: 498 taggctttcaacagttcccaaaacaactgaaccaataccaagctgggcttggctgtcggc 557 | ||| | |||| ||| | || || || ||||| |||||||| |||||||| || || Sbjct: 898 caagctctgaacaactccgaggaccacagatccaattccaagctgagcttggctatctgc 839 Query: 558 cattgccttgcgattactgaggacaagcctaccttgctcctcatcgacctccacaaactt 617 | || || || || |||||||||||| | ||| |||||||| |||||||||||||| Sbjct: 838 tacagctttacggttgctgaggacaagctttgtttgttcctcatcaacctccacaaactt 779 Query: 618 cagaggtagctctttgtcaagcaactcttcagcagttgttttcgatga 665 ||||||| ||||| ||||| | ||||||||| | || ||||||||| Sbjct: 778 aagaggtatttctttttcaagaagctcttcagctgctgctttcgatga 731
>emb|BX832411.1|CNS0A11I Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH70ZH05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1386 Score = 228 bits (115), Expect = 2e-56 Identities = 379/467 (81%) Strand = Plus / Minus Query: 199 atgtcggcacgagccattgcctctgcttgagctattctctgcctgaatatctgcgccatc 258 ||||| ||||||||||| || |||||||| || |||||||| |||||| |||| |||||| Sbjct: 1150 atgtctgcacgagccatggcttctgcttgcgcaattctctgtctgaatgtctgagccatc 1091 Query: 259 tcatcagccttctcaaaaaccagcttcgggttacgaatcatgtcaccaggcgttggctcc 318 || ||||||||||| || || || || |||||||||||||| |||||||| ||||||||| Sbjct: 1090 tcctcagccttctcgaacacaagttttgggttacgaatcatatcaccaggtgttggctcc 1031 Query: 319 agcttctttgtagaaaggctaacccggcccctttcacgatcatggcttagaatcataacc 378 ||||||||||| || || || || | || || ||||| || || || | ||||||||| Sbjct: 1030 agcttctttgtggagagacttactcttcctctgtcacggtcgtgactcaatatcataacc 971 Query: 379 ttgagagtatcccctggttgaagaactgtcgagatatctgcaacacggtcatgactaatt 438 || | ||| || || || |||||||| || | |||||||| |||||||||||||| || Sbjct: 970 ttcaaagtgtcaccaggctgaagaacagttgcgatatctgagacacggtcatgacttatc 911 Query: 439 tggctgacatgcagaagtccattgattccaccgatatcgatgaaggcaccataaggtttt 498 || |||||||| ||||| |||||||||||||| || || |||||||||||||||||||| Sbjct: 910 tgactgacatgaagaagcccattgattccaccaatgtcaatgaaggcaccataaggtttc 851 Query: 499 aggctttcaacagttcccaaaacaactgaaccaataccaagctgggcttggctgtcggcc 558 | ||| | |||| ||| | || || || ||||| |||||||| |||||||| || || Sbjct: 850 aagctctgaacaactccgaggaccacagatccaattccaagctgagcttggctatctgct 791 Query: 559 attgccttgcgattactgaggacaagcctaccttgctcctcatcgacctccacaaacttc 618 | || || || || |||||||||||| | ||| |||||||| |||||||||||||| Sbjct: 790 acagctttacggttgctgaggacaagctttgtttgttcctcatcaacctccacaaactta 731 Query: 619 agaggtagctctttgtcaagcaactcttcagcagttgttttcgatga 665 ||||||| ||||| ||||| | ||||||||| | || ||||||||| Sbjct: 730 agaggtatttctttttcaagaagctcttcagctgctgctttcgatga 684
>dbj|AK221163.1| Arabidopsis thaliana mRNA for ribosomal protein S1, complete cds, clone: RAFL22-96-I01 Length = 594 Score = 198 bits (100), Expect = 2e-47 Identities = 250/300 (83%) Strand = Plus / Minus Query: 198 catgtcggcacgagccattgcctctgcttgagctattctctgcctgaatatctgcgccat 257 |||||| ||||||||||| || |||||||| || |||||||| |||||| |||| ||||| Sbjct: 311 catgtctgcacgagccatggcttctgcttgcgcaattctctgtctgaatgtctgagccat 252 Query: 258 ctcatcagccttctcaaaaaccagcttcgggttacgaatcatgtcaccaggcgttggctc 317 ||| ||||||||||| || || || || |||||||||||||| |||||||| |||||||| Sbjct: 251 ctcctcagccttctcgaacacaagttttgggttacgaatcatatcaccaggtgttggctc 192 Query: 318 cagcttctttgtagaaaggctaacccggcccctttcacgatcatggcttagaatcataac 377 |||||||||||| || || || || | || || ||||| || || || | |||||||| Sbjct: 191 cagcttctttgtggagagacttactcttcctctgtcacggtcgtgactcaatatcataac 132 Query: 378 cttgagagtatcccctggttgaagaactgtcgagatatctgcaacacggtcatgactaat 437 ||| | ||| || || || |||||||| || | |||||||| |||||||||||||| || Sbjct: 131 cttcaaagtgtcaccaggctgaagaacagttgcgatatctgagacacggtcatgacttat 72 Query: 438 ttggctgacatgcagaagtccattgattccaccgatatcgatgaaggcaccataaggttt 497 || |||||||| ||||| |||||||||||||| || || |||||||||||||||||||| Sbjct: 71 ctgactgacatgaagaagcccattgattccaccaatgtcaatgaaggcaccataaggttt 12
>emb|BX832706.1|CNS0A14W Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH91ZB12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1458 Score = 184 bits (93), Expect = 3e-43 Identities = 369/461 (80%) Strand = Plus / Minus Query: 205 gcacgagccattgcctctgcttgagctattctctgcctgaatatctgcgccatctcatca 264 |||||||| || || |||||||| || |||||||| |||||| |||| |||||||| ||| Sbjct: 1176 gcacgagcgatggcttctgcttgcgcaattctctgtctgaatgtctgagccatctcctca 1117 Query: 265 gccttctcaaaaaccagcttcgggttacgaatcatgtcaccaggcgttggctccagcttc 324 |||||||| || || || || ||||||||||| || |||||||| ||||||||||||||| Sbjct: 1116 gccttctcgaacacaagttttgggttacgaatgatatcaccaggtgttggctccagcttc 1057 Query: 325 tttgtagaaaggctaacccggcccctttcacgatcatggcttagaatcataaccttgaga 384 ||||| || || || || | || || | ||| || || || | ||||||||||| | | Sbjct: 1056 tttgtggagagacttactcttcctctgtgacggtcgtgactgaatatcataaccttcaaa 997 Query: 385 gtatcccctggttgaagaactgtcgagatatctgcaacacggtcatgactaatttggctg 444 || || || || |||||||| || | |||||||| | |||||||||||| || || ||| Sbjct: 996 gtgtcaccaggctgaagaacagttgcgatatctgagagacggtcatgacttatctgactg 937 Query: 445 acatgcagaagtccattgattccaccgatatcgatgaaggcaccataaggttttaggctt 504 | ||| ||||| |||||||||||||| || || |||||||||||||||||||| | ||| Sbjct: 936 agatgaagaagcccattgattccaccaatgtcaatgaaggcaccataaggtttcaagctc 877 Query: 505 tcaacagttcccaaaacaactgaaccaataccaagctgggcttggctgtcggccattgcc 564 | |||| ||| | || || || ||||| |||||||| |||||||| || || | || Sbjct: 876 tgaacaactccgaggaccacagatccaattccaagctgagcttggctatctgctacagct 817 Query: 565 ttgcgattactgaggacaagcctaccttgctcctcatcgacctccacaaacttcagaggt 624 || || || |||||||||||| | ||| |||||||| |||||||||||||| |||||| Sbjct: 816 ttacggttgctgaggacaagctttgtttgttcctcatcaacctccacaaacttaagaggt 757 Query: 625 agctctttgtcaagcaactcttcagcagttgttttcgatga 665 | ||||| ||||| | ||||||||| | || ||||||||| Sbjct: 756 atttctttttcaagaagctcttcagctgctgctttcgatga 716
>gb|AC069554.4|AC069554 Genomic Sequence For Arabidopsis thaliana Clone F19I11 From Chromosome V, complete sequence Length = 96743 Score = 123 bits (62), Expect = 8e-25 Identities = 206/254 (81%) Strand = Plus / Minus Query: 397 tgaagaactgtcgagatatctgcaacacggtcatgactaatttggctgacatgcagaagt 456 |||||||| || | |||||||| |||||||||||||| || || |||||||| ||||| Sbjct: 33773 tgaagaacagttgcgatatctgagacacggtcatgacttatctgactgacatgaagaagc 33714 Query: 457 ccattgattccaccgatatcgatgaaggcaccataaggttttaggctttcaacagttccc 516 |||||||||||||| || || |||||||||||||||||||| | ||| | |||| ||| Sbjct: 33713 ccattgattccaccaatgtcaatgaaggcaccataaggtttcaagctctgaacaactccg 33654 Query: 517 aaaacaactgaaccaataccaagctgggcttggctgtcggccattgccttgcgattactg 576 | || || || ||||| |||||||| |||||||| || || | || || || || ||| Sbjct: 33653 aggaccacagatccaattccaagctgagcttggctatctgctacagctttacggttgctg 33594 Query: 577 aggacaagcctaccttgctcctcatcgacctccacaaacttcagaggtagctctttgtca 636 ||||||||| | ||| |||||||| |||||||||||||| ||||||| ||||| ||| Sbjct: 33593 aggacaagctttgtttgttcctcatcaacctccacaaacttaagaggtatttctttttca 33534 Query: 637 agcaactcttcagc 650 || | ||||||||| Sbjct: 33533 agaagctcttcagc 33520 Score = 71.9 bits (36), Expect = 3e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 198 catgtcggcacgagccattgcctctgcttgagctattctctgcctgaatatctgcgccat 257 |||||| ||||||||||| || |||||||| || |||||||| |||||| |||| ||||| Sbjct: 34113 catgtctgcacgagccatggcttctgcttgcgcaattctctgtctgaatgtctgagccat 34054 Query: 258 ctcatcagcctt 269 ||| |||||||| Sbjct: 34053 ctcctcagcctt 34042 Score = 71.9 bits (36), Expect = 3e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 286 gggttacgaatcatgtcaccaggcgttggctccagcttctttgt 329 |||||||||||||| |||||||| |||||||||||||||||||| Sbjct: 33946 gggttacgaatcatatcaccaggtgttggctccagcttctttgt 33903
>dbj|AB046425.1| Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:F19I11 Length = 96744 Score = 123 bits (62), Expect = 8e-25 Identities = 206/254 (81%) Strand = Plus / Plus Query: 397 tgaagaactgtcgagatatctgcaacacggtcatgactaatttggctgacatgcagaagt 456 |||||||| || | |||||||| |||||||||||||| || || |||||||| ||||| Sbjct: 62974 tgaagaacagttgcgatatctgagacacggtcatgacttatctgactgacatgaagaagc 63033 Query: 457 ccattgattccaccgatatcgatgaaggcaccataaggttttaggctttcaacagttccc 516 |||||||||||||| || || |||||||||||||||||||| | ||| | |||| ||| Sbjct: 63034 ccattgattccaccaatgtcaatgaaggcaccataaggtttcaagctctgaacaactccg 63093 Query: 517 aaaacaactgaaccaataccaagctgggcttggctgtcggccattgccttgcgattactg 576 | || || || ||||| |||||||| |||||||| || || | || || || || ||| Sbjct: 63094 aggaccacagatccaattccaagctgagcttggctatctgctacagctttacggttgctg 63153 Query: 577 aggacaagcctaccttgctcctcatcgacctccacaaacttcagaggtagctctttgtca 636 ||||||||| | ||| |||||||| |||||||||||||| ||||||| ||||| ||| Sbjct: 63154 aggacaagctttgtttgttcctcatcaacctccacaaacttaagaggtatttctttttca 63213 Query: 637 agcaactcttcagc 650 || | ||||||||| Sbjct: 63214 agaagctcttcagc 63227 Score = 71.9 bits (36), Expect = 3e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 286 gggttacgaatcatgtcaccaggcgttggctccagcttctttgt 329 |||||||||||||| |||||||| |||||||||||||||||||| Sbjct: 62801 gggttacgaatcatatcaccaggtgttggctccagcttctttgt 62844 Score = 71.9 bits (36), Expect = 3e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 198 catgtcggcacgagccattgcctctgcttgagctattctctgcctgaatatctgcgccat 257 |||||| ||||||||||| || |||||||| || |||||||| |||||| |||| ||||| Sbjct: 62634 catgtctgcacgagccatggcttctgcttgcgcaattctctgtctgaatgtctgagccat 62693 Query: 258 ctcatcagcctt 269 ||| |||||||| Sbjct: 62694 ctcctcagcctt 62705
>emb|X66135.1|CLSORPS1G S.oleracea rps1 gene for chloroplastic ribosomal protein S1 Length = 4645 Score = 107 bits (54), Expect = 5e-20 Identities = 177/218 (81%) Strand = Plus / Minus Query: 421 acacggtcatgactaatttggctgacatgcagaagtccattgattccaccgatatcgatg 480 ||||| |||||||| ||||| || ||||| ||||| ||||| |||||||| ||||| || Sbjct: 3066 acacgatcatgactgatttgactaacatgaagaagcccattaattccaccaatatcaata 3007 Query: 481 aaggcaccataaggttttaggctttcaacagttcccaaaacaactgaaccaataccaagc 540 |||||||| |||||||| || || ||||||||| |||||||| |||||||||||| Sbjct: 3006 aaggcaccgtaaggtttaagagattgaacagttcctgtgacaactgatccaataccaagc 2947 Query: 541 tgggcttggctgtcggccattgccttgcgattactgaggacaagcctaccttgctcctca 600 || || |||||||| ||||| |||||||| ||||| | || | ||| ||| |||||| Sbjct: 2946 tgtgcctggctgtcagccatggccttgcggttactcattaccaacctggattgttcctca 2887 Query: 601 tcgacctccacaaacttcagaggtagctctttgtcaag 638 || ||||| |||||||| ||||| | |||||| ||||| Sbjct: 2886 tcaacctcaacaaactttagagggatctctttctcaag 2849 Score = 83.8 bits (42), Expect = 7e-13 Identities = 96/114 (84%) Strand = Plus / Minus Query: 266 ccttctcaaaaaccagcttcgggttacgaatcatgtcaccaggcgttggctccagcttct 325 |||||||||| || |||||||| |||||||||||||||||||| || || |||| ||||| Sbjct: 3303 ccttctcaaagacaagcttcggattacgaatcatgtcaccaggagtaggttccaacttct 3244 Query: 326 ttgtagaaaggctaacccggcccctttcacgatcatggcttagaatcataacct 379 |||| || || || |||| || |||||||| |||||||| | |||||| |||| Sbjct: 3243 ttgtcgacagactcaccctacctctttcacggtcatggctcaaaatcatgacct 3190 Score = 65.9 bits (33), Expect = 2e-07 Identities = 72/85 (84%) Strand = Plus / Minus Query: 184 ggctggaatcttaacatgtcggcacgagccattgcctctgcttgagctattctctgcctg 243 ||||||||||| | |||||| ||||||||||| ||||||||||| || || || || ||| Sbjct: 3839 ggctggaatctgagcatgtcagcacgagccatggcctctgcttgtgcaatcctttgtctg 3780 Query: 244 aatatctgcgccatctcatcagcct 268 ||| | || |||||||| ||||||| Sbjct: 3779 aatgtttgagccatctcctcagcct 3755
>emb|AJ585191.1| Chlamydomonas reinhardtii chloroplast mRNA for ribosomal protein S1 homologue (S1 gene) Length = 2649 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 253 gccatctcatcagccttctcaaaaaccagcttcgggttacgaatcatgtcaccaggcgtt 312 |||||||| || |||||||| | ||||||| |||| ||| | |||||||||||| || Sbjct: 1295 gccatctcctcggccttctcgtacaccagctgggggtcacgcagcatgtcaccaggagtg 1236 Query: 313 ggctccagcttctt 326 |||||||||||||| Sbjct: 1235 ggctccagcttctt 1222
>gb|AC113441.13| Mus musculus chromosome 12, clone RP23-216P13, complete sequence Length = 192187 Score = 48.1 bits (24), Expect = 0.039 Identities = 27/28 (96%) Strand = Plus / Minus Query: 115 tcatcctctggtgtgtctgatgacaatg 142 ||||| |||||||||||||||||||||| Sbjct: 128159 tcatcttctggtgtgtctgatgacaatg 128132
>ref|NM_185024.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1293 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 295 atcatgtcaccaggcgttggctccagc 321 |||||||||| |||||||||||||||| Sbjct: 895 atcatgtcacaaggcgttggctccagc 921
>gb|AC121844.2| Mus musculus BAC clone RP24-81L3 from chromosome 10, complete sequence Length = 187443 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 118 tcctctggtgtgtctgatgacaatggc 144 ||||||||||||||||| ||||||||| Sbjct: 186865 tcctctggtgtgtctgaagacaatggc 186891
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence Length = 102751 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 295 atcatgtcaccaggcgttggctccagc 321 |||||||||| |||||||||||||||| Sbjct: 309 atcatgtcacaaggcgttggctccagc 283
>gb|AC091123.4| Oryza sativa chromosome 3 BAC OSJNBb0093E13 genomic sequence, complete sequence Length = 129778 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 295 atcatgtcaccaggcgttggctccagc 321 |||||||||| |||||||||||||||| Sbjct: 118216 atcatgtcacaaggcgttggctccagc 118190
>dbj|AK063769.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B10, full insert sequence Length = 2589 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 295 atcatgtcaccaggcgttggctccagc 321 |||||||||| |||||||||||||||| Sbjct: 2177 atcatgtcacaaggcgttggctccagc 2203
>gb|AC140299.2| Mus musculus BAC clone RP23-363J15 from 10, complete sequence Length = 201657 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 118 tcctctggtgtgtctgatgacaatggc 144 ||||||||||||||||| ||||||||| Sbjct: 163817 tcctctggtgtgtctgaagacaatggc 163791
>gb|AC166934.3| Mus musculus chromosome 5, clone RP23-246A17, complete sequence Length = 144203 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 118 tcctctggtgtgtctgatgaca 139 |||||||||||||||||||||| Sbjct: 85288 tcctctggtgtgtctgatgaca 85309
>gb|AC091274.11| Mus musculus chromosome 5, clone RP23-149A1, complete sequence Length = 212532 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 118 tcctctggtgtgtctgatgaca 139 |||||||||||||||||||||| Sbjct: 161168 tcctctggtgtgtctgatgaca 161147
>gb|AC113283.13| Mus musculus chromosome 3, clone RP23-397I12, complete sequence Length = 189865 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 118 tcctctggtgtgtctgatgaca 139 |||||||||||||||||||||| Sbjct: 180835 tcctctggtgtgtctgatgaca 180856
>gb|AC124830.8| Mus musculus chromosome 17, clone RP24-165B21, complete sequence Length = 176889 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 118 tcctctggtgtgtctgatgaca 139 |||||||||||||||||||||| Sbjct: 90947 tcctctggtgtgtctgatgaca 90968
>gb|AC123747.26| Mus musculus chromosome 3, clone RP24-123I12, complete sequence Length = 188946 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 118 tcctctggtgtgtctgatgaca 139 |||||||||||||||||||||| Sbjct: 143205 tcctctggtgtgtctgatgaca 143226
>gb|AC098725.3| Mus musculus BAC clone RP23-3D20 from 3, complete sequence Length = 234471 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 118 tcctctggtgtgtctgatgaca 139 |||||||||||||||||||||| Sbjct: 62995 tcctctggtgtgtctgatgaca 63016
>gb|AC139214.12| Mus musculus chromosome 17, clone RP23-345D6, complete sequence Length = 286283 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 118 tcctctggtgtgtctgatgaca 139 |||||||||||||||||||||| Sbjct: 283551 tcctctggtgtgtctgatgaca 283530
>emb|AL604066.9| Mouse DNA sequence from clone RP23-174M12 on chromosome 11 Contains the 3' end of a novel gene, the Mnt gene for max binding protein, two novel genes, the Srr gene for serine racemase, the 5' end of a novel gene and five CpG islands, complete sequence Length = 184151 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 118 tcctctggtgtgtctgatgaca 139 |||||||||||||||||||||| Sbjct: 155559 tcctctggtgtgtctgatgaca 155538
>gb|AC109600.2| Homo sapiens chromosome 16 clone RP11-7O14, complete sequence Length = 142464 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 255 catctcatcagccttctcaaaa 276 |||||||||||||||||||||| Sbjct: 84608 catctcatcagccttctcaaaa 84587
>gb|AC023823.7| Homo sapiens chromosome 16 clone RP11-163K4, complete sequence Length = 155180 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 255 catctcatcagccttctcaaaa 276 |||||||||||||||||||||| Sbjct: 46654 catctcatcagccttctcaaaa 46633
>gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, complete sequence Length = 181063 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 118 tcctctggtgtgtctgatgaca 139 |||||||||||||||||||||| Sbjct: 169161 tcctctggtgtgtctgatgaca 169140
>emb|AL807811.9| Mouse DNA sequence from clone RP23-247I1 on chromosome 4, complete sequence Length = 249021 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 118 tcctctggtgtgtctgatgaca 139 |||||||||||||||||||||| Sbjct: 181180 tcctctggtgtgtctgatgaca 181201
>gb|AC140269.3| Mus musculus BAC clone RP23-322I5 from chromosome 3, complete sequence Length = 205887 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 tcatcctctggtgtgtctgatgaca 139 ||||| ||||||||||||||||||| Sbjct: 118987 tcatcttctggtgtgtctgatgaca 118963
>gb|AY176046.1| Mus musculus thyroid hormone receptor associated protein 220 (Pparbp) gene, complete cds Length = 46739 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 tcatcctctggtgtgtctgatgaca 139 ||||| ||||||||||||||||||| Sbjct: 32879 tcatcttctggtgtgtctgatgaca 32855
>dbj|AK148759.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120442P12 product:unclassifiable, full insert sequence Length = 5840 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 tcatcctctggtgtgtctgatgaca 139 |||||||||||||||||||| |||| Sbjct: 477 tcatcctctggtgtgtctgaagaca 453
>dbj|AK170458.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630104G02 product:unclassifiable, full insert sequence Length = 2561 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 tcatcctctggtgtgtctgatgaca 139 |||||||||||||||||||| |||| Sbjct: 777 tcatcctctggtgtgtctgaagaca 753
>dbj|AK034327.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330178D15 product:unclassifiable, full insert sequence Length = 3453 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 tcatcctctggtgtgtctgatgaca 139 ||||| ||||||||||||||||||| Sbjct: 2359 tcatcttctggtgtgtctgatgaca 2335
>gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence, complete sequence Length = 167397 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 273 aaaaaccagcttcgggttacgaatc 297 ||||||||||||| ||||||||||| Sbjct: 14181 aaaaaccagcttctggttacgaatc 14205
>gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete sequence Length = 132987 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 273 aaaaaccagcttcgggttacgaatc 297 ||||||||||||| ||||||||||| Sbjct: 90761 aaaaaccagcttctggttacgaatc 90785
>emb|AL929233.9| Mouse DNA sequence from clone RP23-388H13 on chromosome 2, complete sequence Length = 133534 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 catcctctggtgtgtctgatg 136 ||||||||||||||||||||| Sbjct: 49232 catcctctggtgtgtctgatg 49212
>gb|AC128664.3| Mus musculus BAC clone RP24-328H10 from 6, complete sequence Length = 147041 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 tcatcctctggtgtgtctgatgaca 139 |||||||||||||||||||| |||| Sbjct: 48370 tcatcctctggtgtgtctgaagaca 48394
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 tggtgtgtctgatgacaatgg 143 ||||||||||||||||||||| Sbjct: 1399009 tggtgtgtctgatgacaatgg 1398989
>emb|AL591205.13| Mouse DNA sequence from clone RP23-333M1 on chromosome 11, complete sequence Length = 183369 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 tcatcctctggtgtgtctgatgaca 139 ||||| ||||||||||||||||||| Sbjct: 48741 tcatcttctggtgtgtctgatgaca 48765
>gb|AC167243.3| Mus musculus BAC clone RP24-144E2 from chromosome 9, complete sequence Length = 193364 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 tctggtgtgtctgatgacaa 140 |||||||||||||||||||| Sbjct: 148895 tctggtgtgtctgatgacaa 148876
>gb|AY305372.1| Fusarium sp. 02TRU712 from Humulus lupulus small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 495 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 335 ccaataccaagctgggcttg 316
>gb|AC114917.2| Mus musculus chromosome 8 clone RP23-84K6, complete sequence Length = 181442 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 atcctctggtgtgtctgatgacaa 140 |||||||||||||||||| ||||| Sbjct: 40749 atcctctggtgtgtctgaagacaa 40726
>gb|AC137848.31| Mus musculus chromosome 9, clone RP24-118I23, complete sequence Length = 190317 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tctggtgtgtctgatgacaa 140 |||||||||||||||||||| Sbjct: 21615 tctggtgtgtctgatgacaa 21634
>gb|AY611088.1| Melanelixia fuliginosa voucher MAF 10229 18S ribosomal RNA gene, partial sequence; and internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 501 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 376 ccaataccaagctgggcttg 357
>gb|AY611085.1| Melanelixia fuliginosa voucher MAF 10222 18S ribosomal RNA gene, partial sequence; and internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 501 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 376 ccaataccaagctgggcttg 357
>gb|AC006815.2| Caenorhabditis elegans cosmid Y6D11A, complete sequence Length = 8452 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 663 tgacacttgtgaaaatggaa 682 |||||||||||||||||||| Sbjct: 77 tgacacttgtgaaaatggaa 96
>gb|AC129943.8| Mus musculus chromosome 5, clone RP23-410M21, complete sequence Length = 178544 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 tctggtgtgtctgatgacaatggc 144 |||||||||||||| ||||||||| Sbjct: 132565 tctggtgtgtctgaagacaatggc 132588
>gb|AC146394.3| Pan troglodytes BAC clone RP43-55L17 from 7, complete sequence Length = 157809 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 aaccaataccaagctgggct 546 |||||||||||||||||||| Sbjct: 108479 aaccaataccaagctgggct 108460
>gb|AC154885.8| Mus musculus chromosome 5, clone RP24-333I1, complete sequence Length = 176471 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 catcctctggtgtgtctgatgaca 139 ||||||||||||||||||| |||| Sbjct: 108531 catcctctggtgtgtctgaagaca 108508
>gb|AC167719.2| Mus musculus BAC clone RP24-285I8 from chromosome 10, complete sequence Length = 180573 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 cctctgcttgagctattctc 237 |||||||||||||||||||| Sbjct: 108596 cctctgcttgagctattctc 108615
>gb|AC110566.17| Mus musculus chromosome 5, clone RP23-300A10, complete sequence Length = 175471 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 tcctctggtgtgtctgatgacaat 141 ||||||||||||||||| |||||| Sbjct: 133888 tcctctggtgtgtctgaagacaat 133865
>gb|AY425652.1| Protoblastenia laeta voucher M-0066806 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 1191 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 1113 ccaataccaagctgggcttg 1094
>gb|AY425651.1| Protoblastenia laeta voucher M-0066805 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 1266 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 1153 ccaataccaagctgggcttg 1134
>gb|AY425650.1| Protoblastenia laeta voucher M-0066804 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 1278 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 1153 ccaataccaagctgggcttg 1134
>gb|AC140395.2| Mus musculus BAC clone RP24-183G4 from chromosome 6, complete sequence Length = 183546 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 catcctctggtgtgtctgatgaca 139 |||| ||||||||||||||||||| Sbjct: 113655 catcttctggtgtgtctgatgaca 113678
>gb|AC142227.3| Mus musculus BAC clone RP24-115G21 from chromosome 12, complete sequence Length = 154904 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 catcctctggtgtgtctgatgaca 139 ||||||||||||||||||| |||| Sbjct: 78517 catcctctggtgtgtctgaagaca 78540
>gb|AC133190.2| Mus musculus BAC clone RP23-375H9 from chromosome 10, complete sequence Length = 151273 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 cctctgcttgagctattctc 237 |||||||||||||||||||| Sbjct: 25551 cctctgcttgagctattctc 25570
>gb|AC124503.2| Mus musculus BAC clone RP23-417F2 from chromosome 10, complete sequence Length = 206343 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 tctggtgtgtctgatgacaatggc 144 |||||||||||||| ||||||||| Sbjct: 125416 tctggtgtgtctgaagacaatggc 125439
>gb|AC121814.3| Mus musculus BAC clone RP23-457H19 from chromosome 15, complete sequence Length = 188928 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tcctctggtgtgtctgatga 137 |||||||||||||||||||| Sbjct: 95770 tcctctggtgtgtctgatga 95751
>gb|AC123555.4| Mus musculus BAC clone RP23-139L20 from 1, complete sequence Length = 205623 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tctggtgtgtctgatgacaa 140 |||||||||||||||||||| Sbjct: 124836 tctggtgtgtctgatgacaa 124855
>gb|AC123870.3| Mus musculus BAC clone RP23-246A19 from 15, complete sequence Length = 223132 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 catcctctggtgtgtctgatgaca 139 ||||||||||||||||||| |||| Sbjct: 110053 catcctctggtgtgtctgaagaca 110076
>ref|XM_536554.2| PREDICTED: Canis familiaris similar to myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) (LOC479417), mRNA Length = 13567 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 tggctgtcggccattgcctt 566 |||||||||||||||||||| Sbjct: 6351 tggctgtcggccattgcctt 6370
>gb|AC074263.5| Homo sapiens BAC clone RP11-324M21 from 7, complete sequence Length = 65580 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 aaccaataccaagctgggct 546 |||||||||||||||||||| Sbjct: 24735 aaccaataccaagctgggct 24754
>gb|AC145768.1| Pan troglodytes BAC clone RP43-5G4 from 7, complete sequence Length = 154325 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 aaccaataccaagctgggct 546 |||||||||||||||||||| Sbjct: 153454 aaccaataccaagctgggct 153473
>gb|AC158913.4| Mus musculus chromosome 5, clone RP24-268J3, complete sequence Length = 152822 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 tcctctggtgtgtctgatgacaat 141 ||||||||||||||||| |||||| Sbjct: 16780 tcctctggtgtgtctgaagacaat 16757
>gb|AC105167.8| Mus musculus, clone RP23-286L9, complete sequence Length = 215113 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tctggtgtgtctgatgacaa 140 |||||||||||||||||||| Sbjct: 160179 tctggtgtgtctgatgacaa 160198
>gb|AC096051.7| Rattus norvegicus 10 BAC CH230-21G1 (Children's Hospital Oakland Research Institute) complete sequence Length = 216194 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tctggtgtgtctgatgacaa 140 |||||||||||||||||||| Sbjct: 190955 tctggtgtgtctgatgacaa 190974
>gb|AY773115.1| Punctelia borreri from China internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 500 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 375 ccaataccaagctgggcttg 356
>gb|AY773111.1| Punctelia borreri from Kenya internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 500 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 375 ccaataccaagctgggcttg 356
>gb|AY267010.1| Punctelia subpraesignis internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 500 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 375 ccaataccaagctgggcttg 356
>gb|AY785275.1| Relicina sydneyensis voucher MAF 10183 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 513 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 386 ccaataccaagctgggcttg 367
>gb|AY785274.1| Relicina subnigra voucher MAF 10184 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 513 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 386 ccaataccaagctgggcttg 367
>gb|AF502684.1| Leaf litter ascomycete strain its106 isolate 1000527163 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 299 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 291 ccaataccaagctgggcttg 272
>dbj|AK149330.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930027J23 product:unclassifiable, full insert sequence Length = 2746 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 tctggtgtgtctgatgacaatggc 144 |||||||||||||| ||||||||| Sbjct: 2688 tctggtgtgtctgaagacaatggc 2711
>gb|AF448458.1|AF448458 Baeomyces rufus BR982.1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequences; and 26S ribosomal RNA gene, partial sequence Length = 549 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 384 ccaataccaagctgggcttg 365
>gb|AF448457.1|AF448457 Baeomyces rufus BR982 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequences; and 26S ribosomal RNA gene, partial sequence Length = 549 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 384 ccaataccaagctgggcttg 365
>gb|AY581080.1| Xanthoparmelia norcapnodes from Australia 18S ribosomal RNA gene, partial sequence; and internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 493 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 370 ccaataccaagctgggcttg 351
>gb|AY581077.1| Xanthoparmelia lithophila from Australia 18S ribosomal RNA gene, partial sequence; and internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 475 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 352 ccaataccaagctgggcttg 333
>gb|AC175674.2| Gallus gallus BAC clone CH261-137E22 from chromosome ul, complete sequence Length = 216348 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 651 agttgttttcgatgacactt 670 |||||||||||||||||||| Sbjct: 208087 agttgttttcgatgacactt 208106
>ref|NM_001027486.2| Caenorhabditis elegans K02F3.12b (K02F3.12) mRNA, complete cds Length = 1832 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 663 tgacacttgtgaaaatggaa 682 |||||||||||||||||||| Sbjct: 1415 tgacacttgtgaaaatggaa 1434
>ref|NM_001027485.1| Caenorhabditis elegans K02F3.12a (K02F3.12) mRNA, complete cds Length = 1922 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 663 tgacacttgtgaaaatggaa 682 |||||||||||||||||||| Sbjct: 1479 tgacacttgtgaaaatggaa 1498
>gb|AC096591.1| Homo sapiens BAC clone RP11-768F19 from 2, complete sequence Length = 182435 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 catctcatcagccttctcaa 274 |||||||||||||||||||| Sbjct: 34746 catctcatcagccttctcaa 34765
>gb|AC140385.3| Mus musculus BAC clone RP23-173G20 from chromosome 6, complete sequence Length = 179564 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tcctctggtgtgtctgatga 137 |||||||||||||||||||| Sbjct: 79433 tcctctggtgtgtctgatga 79414
>gb|AF159941.1|AF159941 Rhizoplaca cylindrica strain U305 internal transcribed spacer 1, 5.8S ribosomal RNA and internal transcribed spacer 2, complete sequence Length = 506 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 381 ccaataccaagctgggcttg 362
>gb|AC016696.8| Homo sapiens BAC clone RP11-130P22 from 2, complete sequence Length = 109431 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 gatgaaggcaccataaggtt 496 |||||||||||||||||||| Sbjct: 105635 gatgaaggcaccataaggtt 105654
>gb|AF297745.1|AF297745 Lethariella canariensis small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 546 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 383 ccaataccaagctgggcttg 364
>gb|U72611.1|GAU72611 Gelatinipulvinella astraoeca 5.8S ribosomal RNA gene, complete sequence Length = 532 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 361 ccaataccaagctgggcttg 342
>gb|AC159742.1| Ornithorhynchus anatinus chromosome UNK clone OABb-263A1, complete sequence Length = 150582 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 cacgagccattgcctctgct 225 |||||||||||||||||||| Sbjct: 56287 cacgagccattgcctctgct 56268
>gb|AF242881.1|AF242881 Agrobacterium tumefaciens octopine-type Ti plasmid, complete sequence Length = 194140 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gcctgaatatctgcgccatc 258 |||||||||||||||||||| Sbjct: 55973 gcctgaatatctgcgccatc 55992
>emb|AM260894.1| Uncultured fungus ITS1, 5.8S rRNA gene and ITS2, clone C630 Length = 384 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 271 ccaataccaagctgggcttg 252
>gb|AF009812.1|AF009812 Roussoella hysterioides ITS1, and 5.8S ribosomal RNA gene, and ITS2, complete sequence Length = 544 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 388 ccaataccaagctgggcttg 369
>gb|AF009806.1|AF009806 Roussoella sp. Mt7 ITS1, and 5.8S ribosomal RNA gene, and ITS2, complete sequence Length = 525 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ccaataccaagctgggcttg 548 |||||||||||||||||||| Sbjct: 403 ccaataccaagctgggcttg 384
>gb|AC135019.3| Mus musculus BAC clone RP23-186D15 from 10, complete sequence Length = 189457 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 catcctctggtgtgtctgatgaca 139 ||||||||||||||||||| |||| Sbjct: 32188 catcctctggtgtgtctgaagaca 32165
>emb|AL928910.7| Mouse DNA sequence from clone RP23-464B2 on chromosome 2, complete sequence Length = 122267 Score = 40.1 bits (20), Expect = 9.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 109 tgcccttcatcctctggtgtgtctgatgacaa 140 |||||||| || |||||||||||||| ||||| Sbjct: 107553 tgcccttcctcttctggtgtgtctgaagacaa 107584
>gb|U00052.3| Caenorhabditis elegans cosmid K02F3, complete sequence Length = 37382 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 663 tgacacttgtgaaaatggaa 682 |||||||||||||||||||| Sbjct: 35759 tgacacttgtgaaaatggaa 35778
>emb|AL683847.12| Mouse DNA sequence from clone RP23-109A3 on chromosome 4, complete sequence Length = 212973 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 tctggtgtgtctgatgacaa 140 |||||||||||||||||||| Sbjct: 65402 tctggtgtgtctgatgacaa 65383
>emb|AL807824.10| Mouse DNA sequence from clone RP23-37J21 on chromosome 11, complete sequence Length = 178597 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 tcctctggtgtgtctgatgacaat 141 ||||||||||||||||| |||||| Sbjct: 161839 tcctctggtgtgtctgaagacaat 161816
>emb|AL591003.16| Mouse DNA sequence from clone RP23-354I24 on chromosome 13, complete sequence Length = 221647 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 atcctctggtgtgtctgatgacaa 140 |||||||||||||||||| ||||| Sbjct: 209638 atcctctggtgtgtctgaagacaa 209615
>emb|AL845173.4| Mouse DNA sequence from clone RP23-322G1 on chromosome 2, complete sequence Length = 194770 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 tctggtgtgtctgatgacaatggc 144 |||||||||||||| ||||||||| Sbjct: 184062 tctggtgtgtctgaagacaatggc 184085
>emb|AL671998.10| Mouse DNA sequence from clone RP23-71G11 on chromosome X, complete sequence Length = 220669 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 tctggtgtgtctgatgacaatggc 144 |||||||||||||| ||||||||| Sbjct: 161782 tctggtgtgtctgaagacaatggc 161805
>emb|AL355176.10| Mouse DNA sequence from clone RP21-505L19 on chromosome 5, complete sequence Length = 151349 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 catcctctggtgtgtctgatgaca 139 ||||||||||||||||||| |||| Sbjct: 89754 catcctctggtgtgtctgaagaca 89731 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,625,490 Number of Sequences: 3902068 Number of extensions: 5625490 Number of successful extensions: 150641 Number of sequences better than 10.0: 113 Number of HSP's better than 10.0 without gapping: 117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149948 Number of HSP's gapped (non-prelim): 691 length of query: 695 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 672 effective length of database: 17,143,297,704 effective search space: 11520296057088 effective search space used: 11520296057088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
