| Clone Name | rbags32l03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Z30243.1|SCCLHSP S.cereale (Halo) chloroplast mRNA for heat-shock protein Length = 2654 Score = 593 bits (299), Expect = e-166 Identities = 403/444 (90%), Gaps = 3/444 (0%) Strand = Plus / Minus Query: 165 ggatgcctacagaactaactaatctctccatgggtcattctcgttctcagtcctgacttc 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2465 ggatgcctacagaactaactaatctctccatgggtcattctcgttctcagtcctgacttc 2406 Query: 225 ggatggctcaacaacctccgttacaacggcttcanaanagtc---gttgacattggtctn 281 ||||||||||| ||||||| |||||| ||||| || |||| || ||||||||||| Sbjct: 2405 ggatggctcaatgacctccggtacaacaccttcagaagagtcaccgtcgacattggtctc 2346 Query: 282 agcctcctcggngccggatctaccccatntcccgccaagggcgatggtcatnatctcgta 341 ||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct: 2345 agcctcctcggcgccggatctaccccatctcccgccaagggcgatggtcatcatctcgta 2286 Query: 342 natcttgccccccaactccgntggactntnaggtgtgtatccactgganatcagggcagt 401 ||||||||||||||||||| |||||| | ||| || || || ||||| ||||||||||| Sbjct: 2285 gatcttgccccccaactccgctggactctcaggagtataaccgctggagatcagggcagt 2226 Query: 402 ctcgtacagnaactnaactgccctnttggcttcggngctntnaggctcgttnttgcaagc 461 ||||||||| | || ||||||||| || ||||||| ||| | |||||| || |||||||| Sbjct: 2225 ctcgtacagcagctcaactgccctcttagcttcggtgctatcaggctcattcttgcaagc 2166 Query: 462 atcactcaagtccttgacaatagggtgttcggnattgatttcaaaaattcttnttcctnt 521 | ||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| | Sbjct: 2165 agcactcaagtccttgacaatagggtggtcggggttgatttcaaaaattctccttcctct 2106 Query: 522 catgaactccaagcttgatgtgtcaccaagcgtttgtgctttcataagcctttccatgtt 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2105 catgaactccaagcttgatgtgtcaccaagcgtttgtgctttcataagcctttccatgtt 2046 Query: 582 agccgaccaaccaaacttgccaga 605 |||||||||||||||||||||||| Sbjct: 2045 agccgaccaaccaaacttgccaga 2022 Score = 167 bits (84), Expect = 5e-38 Identities = 106/112 (94%), Gaps = 1/112 (0%) Strand = Plus / Minus Query: 38 caaacaagattttggagct-agcgttcttacaaagacagtccattgctcgatgtcatcat 96 ||||||||||| ||||||| || ||||||||||||||||||||| ||||||||||||||| Sbjct: 2590 caaacaagattctggagctcagtgttcttacaaagacagtccatcgctcgatgtcatcat 2531 Query: 97 cactctggctccagtgatacttctattttttgctcatccacctccagggtat 148 ||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct: 2530 cactctggctccagtgatactcctattttttgctcgtccacctccagggtat 2479
>dbj|AK073817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068G01, full insert sequence Length = 2890 Score = 315 bits (159), Expect = 9e-83 Identities = 262/302 (86%) Strand = Plus / Minus Query: 304 ccccatntcccgccaagggcgatggtcatnatctcgtanatcttgccccccaactccgnt 363 |||||| |||||||||| ||||||||||| |||||||| |||||||| |||||||| | | Sbjct: 2458 ccccatctcccgccaagagcgatggtcatcatctcgtagatcttgccacccaactcagct 2399 Query: 364 ggactntnaggtgtgtatccactgganatcagggcagtctcgtacagnaactnaactgcc 423 || || | ||| || ||||||||||| ||||| ||||||||||||| | || ||| ||| Sbjct: 2398 gggctgtcaggagtatatccactggagatcagcgcagtctcgtacaacagctcaacggcc 2339 Query: 424 ctnttggcttcggngctntnaggctcgttnttgcaagcatcactcaagtccttgacaata 483 || |||||||||| || | ||||||||| ||||||||| ||||||||||||||||||| Sbjct: 2338 ctcttggcttcggtactttcaggctcgtttttgcaagcagcactcaagtccttgacaatt 2279 Query: 484 gggtgttcggnattgatttcaaaaattcttnttcctntcatgaactccaagcttgatgtg 543 ||||| |||| |||||||||||||||||| ||||| |||||||||| |||||||| || Sbjct: 2278 gggtggtcggggttgatttcaaaaattcttcttcctctcatgaactctaagcttgaagta 2219 Query: 544 tcaccaagcgtttgtgctttcataagcctttccatgttagccgaccaaccaaacttgcca 603 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 2218 tcaccaagtgtttgtgccttcataagcctttccatgtttgctgaccaaccaaatttgcca 2159 Query: 604 ga 605 || Sbjct: 2158 ga 2157
>ref|XM_483065.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2702 Score = 228 bits (115), Expect = 2e-56 Identities = 251/302 (83%) Strand = Plus / Minus Query: 304 ccccatntcccgccaagggcgatggtcatnatctcgtanatcttgccccccaactccgnt 363 |||||| ||||||||||||| || ||||| ||||| || ||||| || |||||||||| Sbjct: 2355 ccccatctcccgccaagggcaattgtcatcatctcatagatcttaccacccaactccgca 2296 Query: 364 ggactntnaggtgtgtatccactgganatcagggcagtctcgtacagnaactnaactgcc 423 ||||| | ||| || ||||||||||| ||||| |||||||| |||| | || ||| ||| Sbjct: 2295 ggactgtcaggagtatatccactggagatcagagcagtctcatacaacagctcaacagcc 2236 Query: 424 ctnttggcttcggngctntnaggctcgttnttgcaagcatcactcaagtccttgacaata 483 || || ||||| | || | |||||| || ||||| ||| || ||||||||||||||||| Sbjct: 2235 ctcttagcttctgtactttcaggctcatttttgcaggcagcattcaagtccttgacaata 2176 Query: 484 gggtgttcggnattgatttcaaaaattcttnttcctntcatgaactccaagcttgatgtg 543 ||||| || | || ||||| ||||| ||| | || ||||||||||||||||||||||| Sbjct: 2175 gggtggtcagggttaatttcgaaaatccttctacccctcatgaactccaagcttgatgtg 2116 Query: 544 tcaccaagcgtttgtgctttcataagcctttccatgttagccgaccaaccaaacttgcca 603 || ||||| |||||||||||||| || ||||||||||| || |||||||||||||||||| Sbjct: 2115 tccccaagtgtttgtgctttcatgagtctttccatgttggcagaccaaccaaacttgcca 2056 Query: 604 ga 605 || Sbjct: 2055 ga 2054
>dbj|AK122102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125K17, full insert sequence Length = 2702 Score = 228 bits (115), Expect = 2e-56 Identities = 251/302 (83%) Strand = Plus / Minus Query: 304 ccccatntcccgccaagggcgatggtcatnatctcgtanatcttgccccccaactccgnt 363 |||||| ||||||||||||| || ||||| ||||| || ||||| || |||||||||| Sbjct: 2355 ccccatctcccgccaagggcaattgtcatcatctcatagatcttaccacccaactccgca 2296 Query: 364 ggactntnaggtgtgtatccactgganatcagggcagtctcgtacagnaactnaactgcc 423 ||||| | ||| || ||||||||||| ||||| |||||||| |||| | || ||| ||| Sbjct: 2295 ggactgtcaggagtatatccactggagatcagagcagtctcatacaacagctcaacagcc 2236 Query: 424 ctnttggcttcggngctntnaggctcgttnttgcaagcatcactcaagtccttgacaata 483 || || ||||| | || | |||||| || ||||| ||| || ||||||||||||||||| Sbjct: 2235 ctcttagcttctgtactttcaggctcatttttgcaggcagcattcaagtccttgacaata 2176 Query: 484 gggtgttcggnattgatttcaaaaattcttnttcctntcatgaactccaagcttgatgtg 543 ||||| || | || ||||| ||||| ||| | || ||||||||||||||||||||||| Sbjct: 2175 gggtggtcagggttaatttcgaaaatccttctacccctcatgaactccaagcttgatgtg 2116 Query: 544 tcaccaagcgtttgtgctttcataagcctttccatgttagccgaccaaccaaacttgcca 603 || ||||| |||||||||||||| || ||||||||||| || |||||||||||||||||| Sbjct: 2115 tccccaagtgtttgtgctttcatgagtctttccatgttggcagaccaaccaaacttgcca 2056 Query: 604 ga 605 || Sbjct: 2055 ga 2054
>gb|AY104129.1| Zea mays PCO085355 mRNA sequence Length = 1075 Score = 157 bits (79), Expect = 5e-35 Identities = 242/302 (80%) Strand = Plus / Minus Query: 304 ccccatntcccgccaagggcgatggtcatnatctcgtanatcttgccccccaactccgnt 363 |||||| ||||||| ||||| || | ||| ||||| || |||||||| |||||||||| | Sbjct: 791 ccccatctcccgccgagggcaatcgccatcatctcatagatcttgccacccaactccgct 732 Query: 364 ggactntnaggtgtgtatccactgganatcagggcagtctcgtacagnaactnaactgcc 423 ||||| | || || |||||||| || || | |||| |||||| || | || ||| ||| Sbjct: 731 ggactctccggagtatatccactcgagattaaagcagcctcgtataggagctcaacagcc 672 Query: 424 ctnttggcttcggngctntnaggctcgttnttgcaagcatcactcaagtccttgacaata 483 || ||||||| | ||| | ||||| || ||||||||| | ||||| ||||||| ||| Sbjct: 671 ctcctggcttctgtgctttcgggctcatttttgcaagcagcgctcaaatccttgataatt 612 Query: 484 gggtgttcggnattgatttcaaaaattcttnttcctntcatgaactccaagcttgatgtg 543 ||||| || | |||||||| || || ||| |||| ||||||| ||||| ||||||||| Sbjct: 611 gggtggtcagggttgatttcgaagatccttcttcccctcatgaattccaaacttgatgtg 552 Query: 544 tcaccaagcgtttgtgctttcataagcctttccatgttagccgaccaaccaaacttgcca 603 |||||||| ||||| || ||||| ||||||||||| || || |||||||| ||||||||| Sbjct: 551 tcaccaagtgtttgagccttcatgagcctttccatattggcggaccaaccgaacttgcca 492 Query: 604 ga 605 || Sbjct: 491 ga 490
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 135 bits (68), Expect = 2e-28 Identities = 98/109 (89%) Strand = Plus / Plus Query: 464 cactcaagtccttgacaatagggtgttcggnattgatttcaaaaattcttnttcctntca 523 ||||||||||||||||||| ||||| |||| |||||||||||||||||| ||||| ||| Sbjct: 18096808 cactcaagtccttgacaattgggtggtcggggttgatttcaaaaattcttcttcctctca 18096867 Query: 524 tgaactccaagcttgatgtgtcaccaagcgtttgtgctttcataagcct 572 ||||||| |||||||| || |||||||| |||||||| ||||||||||| Sbjct: 18096868 tgaactctaagcttgaagtatcaccaagtgtttgtgccttcataagcct 18096916 Score = 79.8 bits (40), Expect = 1e-11 Identities = 71/84 (84%) Strand = Plus / Plus Query: 379 tatccactgganatcagggcagtctcgtacagnaactnaactgccctnttggcttcggng 438 ||||||||||| ||||| ||||||||||||| | || ||| ||||| |||||||||| Sbjct: 18096590 tatccactggagatcagcgcagtctcgtacaacagctcaacggccctcttggcttcggta 18096649 Query: 439 ctntnaggctcgttnttgcaagca 462 || | ||||||||| ||||||||| Sbjct: 18096650 ctttcaggctcgtttttgcaagca 18096673 Score = 77.8 bits (39), Expect = 4e-11 Identities = 51/56 (91%) Strand = Plus / Plus Query: 304 ccccatntcccgccaagggcgatggtcatnatctcgtanatcttgccccccaactc 359 |||||| |||||||||| ||||||||||| |||||||| |||||||| |||||||| Sbjct: 18096426 ccccatctcccgccaagagcgatggtcatcatctcgtagatcttgccacccaactc 18096481 Score = 48.1 bits (24), Expect = 0.034 Identities = 33/36 (91%) Strand = Plus / Plus Query: 570 cctttccatgttagccgaccaaccaaacttgccaga 605 |||||||||||| || ||||||||||| |||||||| Sbjct: 18097004 cctttccatgtttgctgaccaaccaaatttgccaga 18097039
>dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0026C08 Length = 155316 Score = 135 bits (68), Expect = 2e-28 Identities = 98/109 (89%) Strand = Plus / Plus Query: 464 cactcaagtccttgacaatagggtgttcggnattgatttcaaaaattcttnttcctntca 523 ||||||||||||||||||| ||||| |||| |||||||||||||||||| ||||| ||| Sbjct: 89930 cactcaagtccttgacaattgggtggtcggggttgatttcaaaaattcttcttcctctca 89989 Query: 524 tgaactccaagcttgatgtgtcaccaagcgtttgtgctttcataagcct 572 ||||||| |||||||| || |||||||| |||||||| ||||||||||| Sbjct: 89990 tgaactctaagcttgaagtatcaccaagtgtttgtgccttcataagcct 90038 Score = 79.8 bits (40), Expect = 1e-11 Identities = 71/84 (84%) Strand = Plus / Plus Query: 379 tatccactgganatcagggcagtctcgtacagnaactnaactgccctnttggcttcggng 438 ||||||||||| ||||| ||||||||||||| | || ||| ||||| |||||||||| Sbjct: 89712 tatccactggagatcagcgcagtctcgtacaacagctcaacggccctcttggcttcggta 89771 Query: 439 ctntnaggctcgttnttgcaagca 462 || | ||||||||| ||||||||| Sbjct: 89772 ctttcaggctcgtttttgcaagca 89795 Score = 77.8 bits (39), Expect = 4e-11 Identities = 51/56 (91%) Strand = Plus / Plus Query: 304 ccccatntcccgccaagggcgatggtcatnatctcgtanatcttgccccccaactc 359 |||||| |||||||||| ||||||||||| |||||||| |||||||| |||||||| Sbjct: 89548 ccccatctcccgccaagagcgatggtcatcatctcgtagatcttgccacccaactc 89603 Score = 48.1 bits (24), Expect = 0.034 Identities = 33/36 (91%) Strand = Plus / Plus Query: 570 cctttccatgttagccgaccaaccaaacttgccaga 605 |||||||||||| || ||||||||||| |||||||| Sbjct: 90126 cctttccatgtttgctgaccaaccaaatttgccaga 90161
>gb|AY106328.1| Zea mays PCO125641 mRNA sequence Length = 1769 Score = 133 bits (67), Expect = 7e-28 Identities = 182/224 (81%) Strand = Plus / Minus Query: 382 ccactgganatcagggcagtctcgtacagnaactnaactgccctnttggcttcggngctn 441 |||||||| ||||| |||| |||||| || |||| | ||||| |||||||| | || Sbjct: 1405 ccactggagatcagcgcagcctcgtatagcaactctgccgccctcttggcttcagtactt 1346 Query: 442 tnaggctcgttnttgcaagcatcactcaagtccttgacaatagggtgttcggnattgatt 501 | ||||||||| ||||||||| | ||| |||||||| ||||| || || | ||||| Sbjct: 1345 tcaggctcgtttttgcaagcagcgttcaggtccttgatgataggatggtcagggttgatc 1286 Query: 502 tcaaaaattcttnttcctntcatgaactccaagcttgatgtgtcaccaagcgtttgtgct 561 |||||||||| | | ||| |||||||||||| |||||||||||||||||| || ||||| Sbjct: 1285 tcaaaaattcgtctacctctcatgaactccaggcttgatgtgtcaccaagggtctgtgcc 1226 Query: 562 ttcataagcctttccatgttagccgaccaaccaaacttgccaga 605 ||||| |||||||||||||| || ||||| ||||| || ||||| Sbjct: 1225 ttcatgagcctttccatgttggctgaccagccaaatttaccaga 1182
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 101 bits (51), Expect = 3e-18 Identities = 87/100 (87%) Strand = Plus / Plus Query: 467 tcaagtccttgacaatagggtgttcggnattgatttcaaaaattcttnttcctntcatga 526 |||||||||||||||||||||| || | || ||||| ||||| ||| | || |||||| Sbjct: 24118301 tcaagtccttgacaatagggtggtcagggttaatttcgaaaatccttctacccctcatga 24118360 Query: 527 actccaagcttgatgtgtcaccaagcgtttgtgctttcat 566 ||||||||||||||||||| ||||| |||||||||||||| Sbjct: 24118361 actccaagcttgatgtgtccccaagtgtttgtgctttcat 24118400 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/58 (86%) Strand = Plus / Plus Query: 304 ccccatntcccgccaagggcgatggtcatnatctcgtanatcttgccccccaactccg 361 |||||| ||||||||||||| || ||||| ||||| || ||||| || |||||||||| Sbjct: 24117967 ccccatctcccgccaagggcaattgtcatcatctcatagatcttaccacccaactccg 24118024 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 570 cctttccatgttagccgaccaaccaaacttgccaga 605 |||||||||||| || |||||||||||||||||||| Sbjct: 24118476 cctttccatgttggcagaccaaccaaacttgccaga 24118511 Score = 40.1 bits (20), Expect = 8.2 Identities = 28/31 (90%) Strand = Plus / Plus Query: 379 tatccactgganatcagggcagtctcgtaca 409 ||||||||||| ||||| |||||||| |||| Sbjct: 24118126 tatccactggagatcagagcagtctcataca 24118156
>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0028A08 Length = 150818 Score = 101 bits (51), Expect = 3e-18 Identities = 87/100 (87%) Strand = Plus / Plus Query: 467 tcaagtccttgacaatagggtgttcggnattgatttcaaaaattcttnttcctntcatga 526 |||||||||||||||||||||| || | || ||||| ||||| ||| | || |||||| Sbjct: 71787 tcaagtccttgacaatagggtggtcagggttaatttcgaaaatccttctacccctcatga 71846 Query: 527 actccaagcttgatgtgtcaccaagcgtttgtgctttcat 566 ||||||||||||||||||| ||||| |||||||||||||| Sbjct: 71847 actccaagcttgatgtgtccccaagtgtttgtgctttcat 71886 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/58 (86%) Strand = Plus / Plus Query: 304 ccccatntcccgccaagggcgatggtcatnatctcgtanatcttgccccccaactccg 361 |||||| ||||||||||||| || ||||| ||||| || ||||| || |||||||||| Sbjct: 71453 ccccatctcccgccaagggcaattgtcatcatctcatagatcttaccacccaactccg 71510 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 570 cctttccatgttagccgaccaaccaaacttgccaga 605 |||||||||||| || |||||||||||||||||||| Sbjct: 71962 cctttccatgttggcagaccaaccaaacttgccaga 71997 Score = 40.1 bits (20), Expect = 8.2 Identities = 28/31 (90%) Strand = Plus / Plus Query: 379 tatccactgganatcagggcagtctcgtaca 409 ||||||||||| ||||| |||||||| |||| Sbjct: 71612 tatccactggagatcagagcagtctcataca 71642
>ref|NM_179601.1| Arabidopsis thaliana CR88; ATP binding / unfolded protein binding AT2G04030 (CR88) transcript variant AT2G04030.2 mRNA, complete cds Length = 2612 Score = 67.9 bits (34), Expect = 4e-08 Identities = 75/89 (84%) Strand = Plus / Minus Query: 517 cctntcatgaactccaagcttgatgtgtcaccaagcgtttgtgctttcataagcctttcc 576 ||| |||||||||||| |||||| ||||| ||||| | ||||| ||||| ||||||||| Sbjct: 2086 cctctcatgaactccaggcttgaagtgtctccaagagcctgtgccttcattagcctttcc 2027 Query: 577 atgttagccgaccaaccaaacttgccaga 605 || ||||| ||||| || || |||||||| Sbjct: 2026 atattagctgaccacccgaatttgccaga 1998
>ref|NM_126439.2| Arabidopsis thaliana CR88; ATP binding / unfolded protein binding AT2G04030 (CR88) transcript variant AT2G04030.1 mRNA, complete cds Length = 2621 Score = 67.9 bits (34), Expect = 4e-08 Identities = 75/89 (84%) Strand = Plus / Minus Query: 517 cctntcatgaactccaagcttgatgtgtcaccaagcgtttgtgctttcataagcctttcc 576 ||| |||||||||||| |||||| ||||| ||||| | ||||| ||||| ||||||||| Sbjct: 2095 cctctcatgaactccaggcttgaagtgtctccaagagcctgtgccttcattagcctttcc 2036 Query: 577 atgttagccgaccaaccaaacttgccaga 605 || ||||| ||||| || || |||||||| Sbjct: 2035 atattagctgaccacccgaatttgccaga 2007
>gb|AY094422.1| Arabidopsis thaliana At2g04030/F3C11.14 mRNA, complete cds Length = 2596 Score = 67.9 bits (34), Expect = 4e-08 Identities = 75/89 (84%) Strand = Plus / Minus Query: 517 cctntcatgaactccaagcttgatgtgtcaccaagcgtttgtgctttcataagcctttcc 576 ||| |||||||||||| |||||| ||||| ||||| | ||||| ||||| ||||||||| Sbjct: 2095 cctctcatgaactccaggcttgaagtgtctccaagagcctgtgccttcattagcctttcc 2036 Query: 577 atgttagccgaccaaccaaacttgccaga 605 || ||||| ||||| || || |||||||| Sbjct: 2035 atattagctgaccacccgaatttgccaga 2007
>gb|AF436826.1|AF436826 Arabidopsis thaliana At2g04030/F3C11.14 mRNA, complete cds Length = 2610 Score = 67.9 bits (34), Expect = 4e-08 Identities = 75/89 (84%) Strand = Plus / Minus Query: 517 cctntcatgaactccaagcttgatgtgtcaccaagcgtttgtgctttcataagcctttcc 576 ||| |||||||||||| |||||| ||||| ||||| | ||||| ||||| ||||||||| Sbjct: 2095 cctctcatgaactccaggcttgaagtgtctccaagagcctgtgccttcattagcctttcc 2036 Query: 577 atgttagccgaccaaccaaacttgccaga 605 || ||||| ||||| || || |||||||| Sbjct: 2035 atattagctgaccacccgaatttgccaga 2007
>gb|AY053403.1| Arabidopsis thaliana At2g04030/F3C11.14 mRNA, complete cds Length = 2507 Score = 67.9 bits (34), Expect = 4e-08 Identities = 75/89 (84%) Strand = Plus / Minus Query: 517 cctntcatgaactccaagcttgatgtgtcaccaagcgtttgtgctttcataagcctttcc 576 ||| |||||||||||| |||||| ||||| ||||| | ||||| ||||| ||||||||| Sbjct: 2080 cctctcatgaactccaggcttgaagtgtctccaagagcctgtgccttcattagcctttcc 2021 Query: 577 atgttagccgaccaaccaaacttgccaga 605 || ||||| ||||| || || |||||||| Sbjct: 2020 atattagctgaccacccgaatttgccaga 1992
>emb|BX820811.1|CNS0A8OS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH71ZC02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 751 Score = 67.9 bits (34), Expect = 4e-08 Identities = 75/89 (84%) Strand = Plus / Minus Query: 517 cctntcatgaactccaagcttgatgtgtcaccaagcgtttgtgctttcataagcctttcc 576 ||| |||||||||||| |||||| ||||| ||||| | ||||| ||||| ||||||||| Sbjct: 267 cctctcatgaactccaggcttgaagtgtctccaagagcctgtgccttcattagcctttcc 208 Query: 577 atgttagccgaccaaccaaacttgccaga 605 || ||||| ||||| || || |||||||| Sbjct: 207 atattagctgaccacccgaatttgccaga 179
>gb|BT002234.1| Arabidopsis thaliana At2g04030/F3C11.14 mRNA, complete cds Length = 2343 Score = 67.9 bits (34), Expect = 4e-08 Identities = 75/89 (84%) Strand = Plus / Minus Query: 517 cctntcatgaactccaagcttgatgtgtcaccaagcgtttgtgctttcataagcctttcc 576 ||| |||||||||||| |||||| ||||| ||||| | ||||| ||||| ||||||||| Sbjct: 2012 cctctcatgaactccaggcttgaagtgtctccaagagcctgtgccttcattagcctttcc 1953 Query: 577 atgttagccgaccaaccaaacttgccaga 605 || ||||| ||||| || || |||||||| Sbjct: 1952 atattagctgaccacccgaatttgccaga 1924
>gb|BT017162.1| Zea mays clone EL01N0368C07.c mRNA sequence Length = 1171 Score = 48.1 bits (24), Expect = 0.034 Identities = 39/44 (88%) Strand = Plus / Plus Query: 556 tgtgctttcataagcctttccatgttagccgaccaaccaaactt 599 |||||| |||| ||||||||||| || || |||||||||||||| Sbjct: 686 tgtgctctcatcagcctttccatattggctgaccaaccaaactt 729
>emb|Y11829.1|ATHSP881 A.thaliana hsp88.1 gene Length = 4544 Score = 48.1 bits (24), Expect = 0.034 Identities = 50/59 (84%) Strand = Plus / Minus Query: 517 cctntcatgaactccaagcttgatgtgtcaccaagcgtttgtgctttcataagcctttc 575 ||| |||||||||||| |||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct: 3867 cctctcatgaactccaggcttgaagtgtctccaagagcctgtgccttcattagcctttc 3809
>gb|AC007167.5| Arabidopsis thaliana chromosome 2 clone F3C11 map mi310, complete sequence Length = 103874 Score = 48.1 bits (24), Expect = 0.034 Identities = 50/59 (84%) Strand = Plus / Minus Query: 517 cctntcatgaactccaagcttgatgtgtcaccaagcgtttgtgctttcataagcctttc 575 ||| |||||||||||| |||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct: 94439 cctctcatgaactccaggcttgaagtgtctccaagagcctgtgccttcattagcctttc 94381
>gb|AY107109.1| Zea mays PCO121171 mRNA sequence Length = 1869 Score = 48.1 bits (24), Expect = 0.034 Identities = 39/44 (88%) Strand = Plus / Minus Query: 556 tgtgctttcataagcctttccatgttagccgaccaaccaaactt 599 |||||| |||| ||||||||||| || || |||||||||||||| Sbjct: 1123 tgtgctctcatcagcctttccatattggctgaccaaccaaactt 1080
>gb|AF500173.1| Issatchenkia orientalis heat shock protein 90 (hsp 90) gene, partial cds Length = 960 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 555 ttgtgctttcataagcctttccatgttagccgaccaacc 593 |||||| ||||||| |||||||||||||| |||||||| Sbjct: 624 ttgtgccttcataattctttccatgttagcagaccaacc 586
>emb|AJ719165.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT21-3-205, cultivar Bright Yellow 2 Length = 165 Score = 46.1 bits (23), Expect = 0.13 Identities = 92/116 (79%) Strand = Plus / Minus Query: 484 gggtgttcggnattgatttcaaaaattcttnttcctntcatgaactccaagcttgatgtg 543 |||||||||| |||||| ||||| | |||| | | ||||||| |||| | | || || Sbjct: 152 gggtgttcgggattgatctcaaagactcttctgctcctcatgaaatccaggttggaggta 93 Query: 544 tcaccaagcgtttgtgctttcataagcctttccatgttagccgaccaaccaaactt 599 ||||||| ||||| || ||||| ||||| ||||| || || |||||||||||||| Sbjct: 92 tcaccaacagtttgggccttcatcagcctctccatattggctgaccaaccaaactt 37
>ref|XM_448795.1| Candida glabrata CBS138, CAGL0L00495g partial mRNA Length = 2118 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 571 ctttccatgttagccgaccaaccaaa 596 |||||||||||||| ||||||||||| Sbjct: 1760 ctttccatgttagcggaccaaccaaa 1735
>emb|Z67751.1|SC38KCXVI S.cerevisiae DNA (chromosome XVI; 38 kb) Length = 37808 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 571 ctttccatgttagccgaccaaccaaa 596 |||||||||||||| ||||||||||| Sbjct: 28239 ctttccatgttagcagaccaaccaaa 28264
>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence Length = 1440588 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 571 ctttccatgttagccgaccaaccaaa 596 |||||||||||||| ||||||||||| Sbjct: 53483 ctttccatgttagcggaccaaccaaa 53508
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 570 cctttccatgttagccgaccaaccaaactt 599 |||||||||||| || |||||||||||||| Sbjct: 19963399 cctttccatgttcgcagaccaaccaaactt 19963428
>gb|AF251005.1|AF251005 Candida tropicalis heat shock protein 90 gene, partial cds Length = 2070 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 571 ctttccatgttagccgaccaaccaaa 596 |||||||||||||| ||||||||||| Sbjct: 1712 ctttccatgttagcagaccaaccaaa 1687
>dbj|AK069204.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009C12, full insert sequence Length = 2803 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Minus Query: 570 cctttccatgttagccgaccaaccaaactt 599 |||||||||||| || |||||||||||||| Sbjct: 2191 cctttccatgttcgcagaccaaccaaactt 2162
>dbj|AK067032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088H23, full insert sequence Length = 1894 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Minus Query: 570 cctttccatgttagccgaccaaccaaactt 599 |||||||||||| || |||||||||||||| Sbjct: 1262 cctttccatgttcgcagaccaaccaaactt 1233
>dbj|AK059704.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-D05, full insert sequence Length = 792 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Minus Query: 570 cctttccatgttagccgaccaaccaaactt 599 |||||||||||| || |||||||||||||| Sbjct: 162 cctttccatgttcgcagaccaaccaaactt 133
>emb|Z73596.1|SCYPL240C S.cerevisiae chromosome XVI reading frame ORF YPL240c Length = 3225 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 571 ctttccatgttagccgaccaaccaaa 596 |||||||||||||| ||||||||||| Sbjct: 596 ctttccatgttagcagaccaaccaaa 621
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 570 cctttccatgttagccgaccaaccaaactt 599 |||||||||||| || |||||||||||||| Sbjct: 19889613 cctttccatgttcgcagaccaaccaaactt 19889642
>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165433 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Minus Query: 570 cctttccatgttagccgaccaaccaaactt 599 |||||||||||| || |||||||||||||| Sbjct: 63861 cctttccatgttcgcagaccaaccaaactt 63832
>gb|K01387.1|YSCHSP82A Yeast (S.cerevisiae) HSP82 (heat shock-inducible) gene, complete coding sequence and flanks Length = 2734 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 571 ctttccatgttagccgaccaaccaaa 596 |||||||||||||| ||||||||||| Sbjct: 2104 ctttccatgttagcagaccaaccaaa 2079
>gb|AY729858.1| Pavlova lutheri heat shock protein 90 gene, partial cds Length = 1734 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 562 ttcataagcctttccatgttagccgacca 590 ||||||| |||||||||||||||||||| Sbjct: 1730 ttcataatgctttccatgttagccgacca 1702
>gb|AC159649.3| Mus musculus BAC clone RP23-46D6 from chromosome 12, complete sequence Length = 198777 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 464 cactcaagtccttgacaatag 484 ||||||||||||||||||||| Sbjct: 115100 cactcaagtccttgacaatag 115080
>gb|AY641576.1| Avian infectious bronchitis virus isolate Peafowl/GD/KQ6/2003, complete genome Length = 27434 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ctcgatgtcatcatcactct 102 |||||||||||||||||||| Sbjct: 2886 ctcgatgtcatcatcactct 2867
>gb|AC183296.3| Pan troglodytes BAC clone CH251-352A17 from chromosome 19, complete sequence Length = 180482 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 561 tttcataagcctttccatgttagc 584 ||||||||||||||| |||||||| Sbjct: 120284 tttcataagcctttcaatgttagc 120261
>gb|AY514485.1| Avian infectious bronchitis virus strain Cal99, complete genome Length = 27693 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ctcgatgtcatcatcactct 102 |||||||||||||||||||| Sbjct: 2884 ctcgatgtcatcatcactct 2865
>gb|AC116996.3| Mus musculus BAC clone RP23-6B22 from 15, complete sequence Length = 229669 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 cagtgatacttctatttttt 127 |||||||||||||||||||| Sbjct: 10287 cagtgatacttctatttttt 10268
>gb|AC092296.2| Homo sapiens chromosome 19 clone CTD-3162L10, complete sequence Length = 150222 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 561 tttcataagcctttccatgttagc 584 ||||||||||||||| |||||||| Sbjct: 34418 tttcataagcctttcaatgttagc 34395
>gb|AC099397.5| Homo sapiens BAC clone RP11-247K9 from 4, complete sequence Length = 100007 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 556 tgtgctttcataagcctttc 575 |||||||||||||||||||| Sbjct: 30359 tgtgctttcataagcctttc 30378
>gb|AF165818.4|AF165818 Guillardia theta nucleomorph chromosome 1, complete sequence Length = 196216 Score = 40.1 bits (20), Expect = 8.2 Identities = 35/40 (87%) Strand = Plus / Minus Query: 555 ttgtgctttcataagcctttccatgttagccgaccaacca 594 |||||||||||||| | ||||||||| || ||||||||| Sbjct: 14495 ttgtgctttcataatacgttccatgtttgctgaccaacca 14456
>gb|AF123259.1|AF123259 Lycopersicon esculentum heat shock protein 90 (HSP90) mRNA, partial cds Length = 1610 Score = 40.1 bits (20), Expect = 8.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 559 gctttcataagcctttccatgttagccgaccaacca 594 |||||||| | ||||||||||||||| | ||||||| Sbjct: 885 gctttcatgatcctttccatgttagctgtccaacca 850
>gb|AC160934.2| Mus musculus BAC clone RP23-435H22 from chromosome 15, complete sequence Length = 183147 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 cagtgatacttctatttttt 127 |||||||||||||||||||| Sbjct: 128559 cagtgatacttctatttttt 128578
>gb|J04017.1|SCMHSP86 S.mansoni heat shock protein 86 mRNA, complete cds Length = 1365 Score = 40.1 bits (20), Expect = 8.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 555 ttgtgctttcataagcctttccatgttagccgaccaaccaaact 598 |||||| ||||| | ||| ||||||||||| |||||||| |||| Sbjct: 985 ttgtgccttcatgatcctctccatgttagcagaccaaccgaact 942 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,431,478 Number of Sequences: 3902068 Number of extensions: 3431478 Number of successful extensions: 55354 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55205 Number of HSP's gapped (non-prelim): 147 length of query: 605 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 582 effective length of database: 17,143,297,704 effective search space: 9977399263728 effective search space used: 9977399263728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)