ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags32l02 |
|---|---|
| Clone Library Name | barley_pub |
>RDRP_PVXCP (P22591) RNA replication protein (165 kDa protein) (ORF 1 protein)| [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] Length = 1456 Score = 33.9 bits (76), Expect = 0.33 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%) Frame = +1 Query: 151 QPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSSQ--QRLDS 291 +P+ + LDH+ Q C S++S+A +++ INT NSS ++LDS Sbjct: 930 KPKVQIVLDHNTQVCSANVMYSALSRATDRIHFINTSANSSAFWEKLDS 978
>RDRP_PVXHB (Q07630) RNA replication protein (165 kDa protein) (ORF 1 protein)| [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] Length = 1456 Score = 32.7 bits (73), Expect = 0.73 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%) Frame = +1 Query: 151 QPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSSQ--QRLDS 291 +P+ + LDH+ Q C +++S+A +++ INT NSS ++LDS Sbjct: 930 KPKVQIVLDHNTQVCSANVMYTALSRATDRIHFINTSANSSAFWEKLDS 978
>RDRP_PVXX3 (P17779) RNA replication protein (165 kDa protein) (ORF 1 protein)| [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] Length = 1456 Score = 32.3 bits (72), Expect = 0.95 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%) Frame = +1 Query: 151 QPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSSQ--QRLDS 291 +P+ + LDH+ Q C +++S+A +++ +NT NSS ++LDS Sbjct: 930 KPKVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDS 978
>RDRP_PVX (P09395) RNA replication protein (165 kDa protein) (ORF 1 protein)| [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] Length = 1456 Score = 32.3 bits (72), Expect = 0.95 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%) Frame = +1 Query: 151 QPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSSQ--QRLDS 291 +P+ + LDH+ Q C +++S+A +++ +NT NSS ++LDS Sbjct: 930 KPKVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDS 978
>IRA1_YEAST (P18963) Inhibitory regulator protein IRA1| Length = 3092 Score = 32.3 bits (72), Expect = 0.95 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +1 Query: 142 VNNQPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSSQQRLDSGRNSS 306 VNN + H S+ + TN +SISK K +N N S + +G ++S Sbjct: 368 VNNDHHYHLHHSSSSSKTTNTNSPNSISKTSIKQSSVNASGNVSPSQFSTGNDAS 422
>PDE5A_CANFA (O77746) cGMP-specific 3',5'-cyclic phosphodiesterase (EC 3.1.4.35)| (CGB-PDE) (cGMP-binding cGMP-specific phosphodiesterase) Length = 865 Score = 32.0 bits (71), Expect = 1.2 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -2 Query: 509 FSEKVHRIPSIKFGVAGGVKSCAC 438 F+E+VH IP K G+ G +SC+C Sbjct: 48 FAERVHTIPVCKEGIRGHAESCSC 71
>PDE5A_BOVIN (Q28156) cGMP-specific 3',5'-cyclic phosphodiesterase (EC 3.1.4.35)| (CGB-PDE) (cGMP-binding cGMP-specific phosphodiesterase) Length = 865 Score = 32.0 bits (71), Expect = 1.2 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -2 Query: 509 FSEKVHRIPSIKFGVAGGVKSCAC 438 F+E+VH IP K G+ G +SC+C Sbjct: 48 FAERVHTIPVCKEGIKGHTESCSC 71
>PDE5A_HUMAN (O76074) cGMP-specific 3',5'-cyclic phosphodiesterase (EC 3.1.4.35)| (CGB-PDE) (cGMP-binding cGMP-specific phosphodiesterase) Length = 875 Score = 32.0 bits (71), Expect = 1.2 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -2 Query: 509 FSEKVHRIPSIKFGVAGGVKSCAC 438 F+E+VH IP K G+ G +SC+C Sbjct: 58 FAERVHTIPVCKEGIRGHTESCSC 81
>PDE5A_RAT (O54735) cGMP-specific 3',5'-cyclic phosphodiesterase (EC 3.1.4.35)| (CGB-PDE) (cGMP-binding cGMP-specific phosphodiesterase) Length = 833 Score = 31.6 bits (70), Expect = 1.6 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 509 FSEKVHRIPSIKFGVAGGVKSCACRM 432 FSE+VH IP K G+ +SC+C + Sbjct: 16 FSERVHNIPVCKEGIRAHTESCSCSL 41
>C1QR1_RAT (Q9ET61) Complement component C1q receptor precursor (Complement| component 1, q subcomponent, receptor 1) (C1qRp) (C1qR(p)) (C1q/MBL/SPA receptor) (CD93 antigen) (Cell surface antigen AA4) Length = 643 Score = 31.6 bits (70), Expect = 1.6 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Frame = +1 Query: 346 WWRQSLSS-LPRACRNTCLPRALSSHPRECILQAHDL---TPPATPNLIEGILCTFSEKM 513 W++ S SS + + C + L +L HP + + H+ TP A N IEG LC F+ K Sbjct: 127 WYKASKSSCISKRCVSLILDLSLKPHPSH-LPKWHESPCGTPDAPGNSIEGFLCKFNFK- 184 Query: 514 SDMCT 528 MC+ Sbjct: 185 -GMCS 188
>PDE5A_MOUSE (Q8CG03) cGMP-specific 3',5'-cyclic phosphodiesterase (EC 3.1.4.35)| (CGB-PDE) (cGMP-binding cGMP-specific phosphodiesterase) Length = 865 Score = 31.6 bits (70), Expect = 1.6 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 509 FSEKVHRIPSIKFGVAGGVKSCACRM 432 FSE+VH IP K G+ +SC+C + Sbjct: 48 FSERVHNIPVCKEGIRAHTESCSCSL 73
>DPOL_HBVAW (P03158) DNA polymerase (EC 2.7.7.7)| Length = 481 Score = 31.2 bits (69), Expect = 2.1 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 2/85 (2%) Frame = +1 Query: 151 QPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSSQQRLDSG--RNSSSGR*TH 324 +P H+DHS S++ KA + + +SS ++ SS+G + Sbjct: 253 EPSGSGHIDHSVNNSSSCLHQSAVRKAAYSHLSTSKRQSSSGHAVEFHCLAPSSAGSQSQ 312 Query: 325 IFICSCTWWRQSLSSLPRACRNTCL 399 + SC WW Q +S P C CL Sbjct: 313 GSVSSC-WWLQFRNSKP--CSEYCL 334
>C1QR1_MOUSE (O89103) Complement component C1q receptor precursor (Complement| component 1, q subcomponent, receptor 1) (C1qRp) (C1qR(p)) (C1q/MBL/SPA receptor) (CD93 antigen) (Cell surface antigen AA4) (Lymphocyte antigen 68) Length = 644 Score = 30.4 bits (67), Expect = 3.6 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Frame = +1 Query: 346 WWRQSLSS-LPRACRNTCLPRALSSHPRECILQAHDL---TPPATPNLIEGILCTFSEK 510 W++ S SS + + C + L +L+ HP + + H+ TP A N IEG LC F+ K Sbjct: 127 WYKASKSSCIFKRCVSLILDLSLTPHPSH-LPKWHESPCGTPEAPGNSIEGFLCKFNFK 184
>VL2_HPV32 (P36757) Minor capsid protein L2| Length = 476 Score = 30.0 bits (66), Expect = 4.7 Identities = 22/75 (29%), Positives = 32/75 (42%) Frame = +2 Query: 194 VTEPIGPPVSPRLYTSFIRLIHLTTAPSNVSILGEIVHLGDELTFSFAAVHGGGNLYLPF 373 V EP GP + P + I T PS +S+L E + + HGG N+ Sbjct: 81 VAEP-GPAIRPPVVVDTIG----PTDPSVISLLEESAVIDSSIPVPTDTSHGGFNITSSA 135 Query: 374 QGRAGIHACLELYPP 418 G + A L++ PP Sbjct: 136 SGPSSTPAVLDISPP 150
>DPOL_HBVW2 (P03159) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 845 Score = 29.6 bits (65), Expect = 6.1 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%) Frame = +1 Query: 151 QPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSSQQRLDSG--RNSSSGR*TH 324 +P H+DHS S++ KA + + +SS ++ +S+G + Sbjct: 260 EPSGSGHIDHSVNNSSSCLHQSAVRKAAYSHLSTSKRQSSSGHAVEFHCLPPNSAGSQSQ 319 Query: 325 IFICSCTWWRQSLSSLPRACRNTCL 399 + SC WW Q +S P C CL Sbjct: 320 GSVSSC-WWLQFRNSKP--CSEYCL 341
>HEMA_CDVC (Q65999) Hemagglutinin glycoprotein| Length = 607 Score = 29.3 bits (64), Expect = 8.0 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 7/46 (15%) Frame = +2 Query: 260 LTTAPSNVSILGEI--VHLGDELT-----FSFAAVHGGGNLYLPFQ 376 LT P N +ILG I GD+ T +FA + GN YLP Q Sbjct: 450 LTIPPKNGTILGLINKAGRGDQFTVIPHVLTFAPMESSGNCYLPIQ 495
>BCSC2_ACEXY (O82861) Cellulose synthase operon protein C precursor| Length = 1326 Score = 29.3 bits (64), Expect = 8.0 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = +1 Query: 349 WRQSLSSLP-RACRNTCLPRALSSHPRECILQAHDLTPPATP 471 +RQ+LS LP + + LS+HP + L+ H L PP P Sbjct: 246 YRQTLSWLPVNPDTQPLMEQWLSAHPNDAALREHMLHPPGGP 287
>VL2_HPV42 (P27235) Minor capsid protein L2| Length = 477 Score = 29.3 bits (64), Expect = 8.0 Identities = 23/75 (30%), Positives = 33/75 (44%) Frame = +2 Query: 194 VTEPIGPPVSPRLYTSFIRLIHLTTAPSNVSILGEIVHLGDELTFSFAAVHGGGNLYLPF 373 + EP GP V P + + + PS VS+L E + +T HGG N+ Sbjct: 81 IAEP-GPAVRPPIAVDTVG----PSDPSIVSLLEESSVIDAGITVPDITSHGGFNITTST 135 Query: 374 QGRAGIHACLELYPP 418 G A A L++ PP Sbjct: 136 GGPASTPAILDISPP 150 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,227,906 Number of Sequences: 219361 Number of extensions: 1749572 Number of successful extensions: 4823 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4695 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4822 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
