| Clone Name | rbags32k23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY109127.1| Zea mays PCO138649 mRNA sequence Length = 932 Score = 220 bits (111), Expect = 5e-54 Identities = 246/291 (84%) Strand = Plus / Minus Query: 421 tcacacacctctgttggctggaacaagtttgagaagctttgccagatcatatgagttgaa 480 |||| |||||||||| ||||||| ||| |||| ||||||||| ||||||||||| ||||| Sbjct: 583 tcacgcacctctgtttgctggaataagcttgacaagctttgcaagatcatatgacttgaa 524 Query: 481 gtcccttccgaaacataagctgaggtccaatggagtttttccaccattggttcttcttgt 540 |||||||| || |||| || || |||| | ||| | ||| | |||||||||||||| Sbjct: 523 atcccttccaaagcatagacttagatccagcgcagtcctcccatccttggttcttcttgt 464 Query: 541 ctgatcggcaccattgacaagcaatatctttgttatatcccgatttctactctgtaccgc 600 || ||| ||||||||||||||||| | ||| | |||||| | ||| |||||||||| || Sbjct: 463 cttatccgcaccattgacaagcaagaccttagctatatctctattcctactctgtatggc 404 Query: 601 taaatgcagtggtgtccagccatcaacatcagcaacgttaacatcaaccctgtacttaat 660 |||||| ||||||||||| |||||| ||| ||||| || ||||||||| |||||||||| Sbjct: 403 taaatggagtggtgtccatccatcattatcggcaacattgacatcaaccttgtacttaat 344 Query: 661 cagcagcttcacggtttgcagggcaccaacttgaactgcataatgtaatgg 711 ||| | |||||||||||||||||||||| ||||||| |||||||||||||| Sbjct: 343 cagtaacttcacggtttgcagggcaccagcttgaacagcataatgtaatgg 293
>gb|BT018979.1| Zea mays clone Contig415.F mRNA sequence Length = 1356 Score = 198 bits (100), Expect = 2e-47 Identities = 238/284 (83%) Strand = Plus / Minus Query: 428 cctctgttggctggaacaagtttgagaagctttgccagatcatatgagttgaagtccctt 487 ||||| || ||||||| ||| |||| ||||||||| ||||||||||| ||||| |||||| Sbjct: 1013 cctctatttgctggaataagcttgacaagctttgcaagatcatatgacttgaaatccctt 954 Query: 488 ccgaaacataagctgaggtccaatggagtttttccaccattggttcttcttgtctgatcg 547 || || |||| || || |||| | ||| | ||| | |||||||||||||||| ||| Sbjct: 953 ccaaagcatagacttagatccagcgcagtcctcccatccttggttcttcttgtcttatcc 894 Query: 548 gcaccattgacaagcaatatctttgttatatcccgatttctactctgtaccgctaaatgc 607 ||||||||||||||||| | ||| | |||||| | ||| |||||||||| |||||||| Sbjct: 893 gcaccattgacaagcaagaccttagctatatctctattcctactctgtatggctaaatgg 834 Query: 608 agtggtgtccagccatcaacatcagcaacgttaacatcaaccctgtacttaatcagcagc 667 ||||||||||| |||||| ||| ||||| || ||||||||| ||||||||||||| | | Sbjct: 833 agtggtgtccatccatcattatcggcaacattgacatcaaccttgtacttaatcagtaac 774 Query: 668 ttcacggtttgcagggcaccaacttgaactgcataatgtaatgg 711 ||||||||||||||||| ||| ||||||| |||||||||||||| Sbjct: 773 ttcacggtttgcagggccccagcttgaacagcataatgtaatgg 730
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 115 bits (58), Expect = 2e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 527 ttggttcttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgattt 586 ||||||||||| |||| ||| ||||||||||||||||||||||||| |||||| | |||| Sbjct: 7132310 ttggttcttctcgtcttatctgcaccattgacaagcaatatctttgctatatctctattt 7132369 Query: 587 ctactctgtaccgctaaatgcagtggtgtccagccatc 624 |||||||||| |||||||||| |||||||||||||| Sbjct: 7132370 ctactctgtatagctaaatgcaacggtgtccagccatc 7132407 Score = 111 bits (56), Expect = 3e-21 Identities = 77/84 (91%) Strand = Plus / Plus Query: 628 atcagcaacgttaacatcaaccctgtacttaatcagcagcttcacggtttgcagggcacc 687 ||||||||| || ||||||||||| | ||||||||| | |||||| |||||||||||||| Sbjct: 7132501 atcagcaacattgacatcaaccctattcttaatcagtaacttcacagtttgcagggcacc 7132560 Query: 688 aacttgaactgcataatgtaatgg 711 |||||||||||||||||||||||| Sbjct: 7132561 aacttgaactgcataatgtaatgg 7132584 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 440 ggaacaagtttgagaagctttgccagatcatatgagttgaagtcccttccgaaacataag 499 ||||||||||||| ||||||||||| |||||| || ||||| || ||||| ||||| ||| Sbjct: 7131956 ggaacaagtttgacaagctttgccaaatcataagacttgaaatctcttccaaaacacaag 7132015 Query: 500 ct 501 || Sbjct: 7132016 ct 7132017
>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0068B06 Length = 143712 Score = 115 bits (58), Expect = 2e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 527 ttggttcttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgattt 586 ||||||||||| |||| ||| ||||||||||||||||||||||||| |||||| | |||| Sbjct: 9721 ttggttcttctcgtcttatctgcaccattgacaagcaatatctttgctatatctctattt 9780 Query: 587 ctactctgtaccgctaaatgcagtggtgtccagccatc 624 |||||||||| |||||||||| |||||||||||||| Sbjct: 9781 ctactctgtatagctaaatgcaacggtgtccagccatc 9818 Score = 111 bits (56), Expect = 3e-21 Identities = 77/84 (91%) Strand = Plus / Plus Query: 628 atcagcaacgttaacatcaaccctgtacttaatcagcagcttcacggtttgcagggcacc 687 ||||||||| || ||||||||||| | ||||||||| | |||||| |||||||||||||| Sbjct: 9912 atcagcaacattgacatcaaccctattcttaatcagtaacttcacagtttgcagggcacc 9971 Query: 688 aacttgaactgcataatgtaatgg 711 |||||||||||||||||||||||| Sbjct: 9972 aacttgaactgcataatgtaatgg 9995 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 440 ggaacaagtttgagaagctttgccagatcatatgagttgaagtcccttccgaaacataag 499 ||||||||||||| ||||||||||| |||||| || ||||| || ||||| ||||| ||| Sbjct: 9367 ggaacaagtttgacaagctttgccaaatcataagacttgaaatctcttccaaaacacaag 9426 Query: 500 ct 501 || Sbjct: 9427 ct 9428
>ref|NM_195463.1| Oryza sativa (japonica cultivar-group) putative ankyrin repeat protein (OJ1004_F02.5), mRNA Length = 447 Score = 107 bits (54), Expect = 5e-20 Identities = 84/94 (89%) Strand = Plus / Minus Query: 531 ttcttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgatttctac 590 |||||||||||| ||| ||||||||||||||||||||| |||||||||| | |||||||| Sbjct: 349 ttcttcttgtctcatctgcaccattgacaagcaatatcattgttatatctctatttctac 290 Query: 591 tctgtaccgctaaatgcagtggtgtccagccatc 624 |||||| |||||||||| |||||||| ||||| Sbjct: 289 tctgtatagctaaatgcaacggtgtccacccatc 256
>gb|AC092387.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1004_F02 map C8, complete sequence Length = 116304 Score = 107 bits (54), Expect = 5e-20 Identities = 84/94 (89%) Strand = Plus / Plus Query: 531 ttcttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgatttctac 590 |||||||||||| ||| ||||||||||||||||||||| |||||||||| | |||||||| Sbjct: 17042 ttcttcttgtctcatctgcaccattgacaagcaatatcattgttatatctctatttctac 17101 Query: 591 tctgtaccgctaaatgcagtggtgtccagccatc 624 |||||| |||||||||| |||||||| ||||| Sbjct: 17102 tctgtatagctaaatgcaacggtgtccacccatc 17135
>gb|AC099325.4| Oryza sativa chromosome 10 BAC OSJNBb0048O22 genomic sequence, complete sequence Length = 134825 Score = 107 bits (54), Expect = 5e-20 Identities = 84/94 (89%) Strand = Plus / Minus Query: 531 ttcttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgatttctac 590 |||||||||||| ||| ||||||||||||||||||||| |||||||||| | |||||||| Sbjct: 6384 ttcttcttgtctcatctgcaccattgacaagcaatatcattgttatatctctatttctac 6325 Query: 591 tctgtaccgctaaatgcagtggtgtccagccatc 624 |||||| |||||||||| |||||||| ||||| Sbjct: 6324 tctgtatagctaaatgcaacggtgtccacccatc 6291
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 107 bits (54), Expect = 5e-20 Identities = 84/94 (89%) Strand = Plus / Plus Query: 531 ttcttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgatttctac 590 |||||||||||| ||| ||||||||||||||||||||| |||||||||| | |||||||| Sbjct: 7160424 ttcttcttgtctcatctgcaccattgacaagcaatatcattgttatatctctatttctac 7160483 Query: 591 tctgtaccgctaaatgcagtggtgtccagccatc 624 |||||| |||||||||| |||||||| ||||| Sbjct: 7160484 tctgtatagctaaatgcaacggtgtccacccatc 7160517
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 107 bits (54), Expect = 5e-20 Identities = 84/94 (89%) Strand = Plus / Plus Query: 531 ttcttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgatttctac 590 |||||||||||| ||| ||||||||||||||||||||| |||||||||| | |||||||| Sbjct: 7163720 ttcttcttgtctcatctgcaccattgacaagcaatatcattgttatatctctatttctac 7163779 Query: 591 tctgtaccgctaaatgcagtggtgtccagccatc 624 |||||| |||||||||| |||||||| ||||| Sbjct: 7163780 tctgtatagctaaatgcaacggtgtccacccatc 7163813
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 73.8 bits (37), Expect = 7e-10 Identities = 73/85 (85%) Strand = Plus / Minus Query: 534 ttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgatttctactct 593 ||||||||| ||| ||||||||| ||| ||||||| ||| |||||| | ||||||||||| Sbjct: 15073413 ttcttgtcttatccgcaccattggcaaacaatatcattgctatatctctatttctactct 15073354 Query: 594 gtaccgctaaatgcagtggtgtcca 618 ||| |||||||||| |||||||| Sbjct: 15073353 gtatagctaaatgcaacggtgtcca 15073329 Score = 63.9 bits (32), Expect = 7e-07 Identities = 72/84 (85%), Gaps = 1/84 (1%) Strand = Plus / Minus Query: 628 atcagcaacgttaacatcaaccctgtacttaatcagcagcttcacggtttgcagggcacc 687 ||||||||| || ||||||||| ||| ||| |||| | |||||| ||||||||| |||| Sbjct: 15073227 atcagcaacattgacatcaaccatgttttta-tcagtaacttcacagtttgcaggacacc 15073169 Query: 688 aacttgaactgcataatgtaatgg 711 |||||||| |||||||| |||||| Sbjct: 15073168 aacttgaattgcataatataatgg 15073145
>gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0048F08, from chromosome 3, complete sequence Length = 155790 Score = 73.8 bits (37), Expect = 7e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 534 ttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgatttctactct 593 ||||||||| ||| ||||||||| ||| ||||||| ||| |||||| | ||||||||||| Sbjct: 81360 ttcttgtcttatccgcaccattggcaaacaatatcattgctatatctctatttctactct 81419 Query: 594 gtaccgctaaatgcagtggtgtcca 618 ||| |||||||||| |||||||| Sbjct: 81420 gtatagctaaatgcaacggtgtcca 81444 Score = 63.9 bits (32), Expect = 7e-07 Identities = 72/84 (85%), Gaps = 1/84 (1%) Strand = Plus / Plus Query: 628 atcagcaacgttaacatcaaccctgtacttaatcagcagcttcacggtttgcagggcacc 687 ||||||||| || ||||||||| ||| ||| |||| | |||||| ||||||||| |||| Sbjct: 81546 atcagcaacattgacatcaaccatgttttta-tcagtaacttcacagtttgcaggacacc 81604 Query: 688 aacttgaactgcataatgtaatgg 711 |||||||| |||||||| |||||| Sbjct: 81605 aacttgaattgcataatataatgg 81628
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 73.8 bits (37), Expect = 7e-10 Identities = 73/85 (85%) Strand = Plus / Minus Query: 534 ttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgatttctactct 593 ||||||||| ||| ||||||||| ||| ||||||| ||| |||||| | ||||||||||| Sbjct: 15067947 ttcttgtcttatccgcaccattggcaaacaatatcattgctatatctctatttctactct 15067888 Query: 594 gtaccgctaaatgcagtggtgtcca 618 ||| |||||||||| |||||||| Sbjct: 15067887 gtatagctaaatgcaacggtgtcca 15067863 Score = 63.9 bits (32), Expect = 7e-07 Identities = 72/84 (85%), Gaps = 1/84 (1%) Strand = Plus / Minus Query: 628 atcagcaacgttaacatcaaccctgtacttaatcagcagcttcacggtttgcagggcacc 687 ||||||||| || ||||||||| ||| ||| |||| | |||||| ||||||||| |||| Sbjct: 15067761 atcagcaacattgacatcaaccatgttttta-tcagtaacttcacagtttgcaggacacc 15067703 Query: 688 aacttgaactgcataatgtaatgg 711 |||||||| |||||||| |||||| Sbjct: 15067702 aacttgaattgcataatataatgg 15067679
>ref|NM_117746.3| Arabidopsis thaliana carbohydrate transporter/ sugar porter AT4G16480 mRNA, complete cds Length = 1996 Score = 48.1 bits (24), Expect = 0.040 Identities = 27/28 (96%) Strand = Plus / Minus Query: 519 ttccaccattggttcttcttgtctgatc 546 ||||||||||| |||||||||||||||| Sbjct: 136 ttccaccattgtttcttcttgtctgatc 109
>emb|Z97341.2|ATFCA6 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6 Length = 213788 Score = 48.1 bits (24), Expect = 0.040 Identities = 27/28 (96%) Strand = Plus / Minus Query: 519 ttccaccattggttcttcttgtctgatc 546 ||||||||||| |||||||||||||||| Sbjct: 55755 ttccaccattgtttcttcttgtctgatc 55728
>emb|AL161544.2|ATCHRIV44 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44 Length = 198735 Score = 48.1 bits (24), Expect = 0.040 Identities = 27/28 (96%) Strand = Plus / Minus Query: 519 ttccaccattggttcttcttgtctgatc 546 ||||||||||| |||||||||||||||| Sbjct: 33683 ttccaccattgtttcttcttgtctgatc 33656
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.040 Identities = 42/48 (87%) Strand = Plus / Minus Query: 454 aagctttgccagatcatatgagttgaagtcccttccgaaacataagct 501 ||||||||||| |||||| || ||||| || ||||| ||||||||||| Sbjct: 434865 aagctttgccaaatcataagacttgaaatctcttccaaaacataagct 434818
>emb|BX828041.1|CNS0A2WR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH47ZD07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1955 Score = 48.1 bits (24), Expect = 0.040 Identities = 27/28 (96%) Strand = Plus / Minus Query: 519 ttccaccattggttcttcttgtctgatc 546 ||||||||||| |||||||||||||||| Sbjct: 136 ttccaccattgtttcttcttgtctgatc 109
>gb|BT004139.1| Arabidopsis thaliana clone RAFL15-36-B07 (R50004) putative membrane transporter (At4g16480) mRNA, complete cds Length = 1964 Score = 48.1 bits (24), Expect = 0.040 Identities = 27/28 (96%) Strand = Plus / Minus Query: 519 ttccaccattggttcttcttgtctgatc 546 ||||||||||| |||||||||||||||| Sbjct: 88 ttccaccattgtttcttcttgtctgatc 61
>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0005A05 Length = 190834 Score = 48.1 bits (24), Expect = 0.040 Identities = 42/48 (87%) Strand = Plus / Minus Query: 454 aagctttgccagatcatatgagttgaagtcccttccgaaacataagct 501 ||||||||||| |||||| || ||||| || ||||| ||||||||||| Sbjct: 186703 aagctttgccaaatcataagacttgaaatctcttccaaaacataagct 186656
>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482C06 Length = 182779 Score = 48.1 bits (24), Expect = 0.040 Identities = 42/48 (87%) Strand = Plus / Minus Query: 454 aagctttgccagatcatatgagttgaagtcccttccgaaacataagct 501 ||||||||||| |||||| || ||||| || ||||| ||||||||||| Sbjct: 75066 aagctttgccaaatcataagacttgaaatctcttccaaaacataagct 75019
>ref|XM_391578.1| Gibberella zeae PH-1 chromosome linkage group 14 hypothetical protein (FG11402.1) partial mRNA Length = 4272 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 604 atgcagtggtgtccagccatcaa 626 ||||||||||||||||||||||| Sbjct: 2469 atgcagtggtgtccagccatcaa 2447
>gb|AC154234.1| Mus musculus BAC clone RP24-345H5 from 16, complete sequence Length = 161505 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 528 tggttcttcttgtctgatcggca 550 ||||||||||||||||||||||| Sbjct: 127366 tggttcttcttgtctgatcggca 127344
>ref|NM_123380.1| Arabidopsis thaliana EMB506 (EMBRYO DEFECTIVE 506); protein binding AT5G40160 (EMB506) mRNA, complete cds Length = 1217 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 677 tgcagggcaccaacttgaactgcataatg 705 |||| ||| |||||||||||||||||||| Sbjct: 724 tgcaaggctccaacttgaactgcataatg 696
>ref|XM_632388.1| Dictyostelium discoideum hypothetical protein (DDB0187205), partial mRNA Length = 5022 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 691 ttgaactgcataatgtaatgg 711 ||||||||||||||||||||| Sbjct: 4767 ttgaactgcataatgtaatgg 4747
>gb|BC019777.1| Mus musculus ankyrin repeat domain 49, mRNA (cDNA clone MGC:25252 IMAGE:3969390), complete cds Length = 1781 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 604 atgcagtggtgtccagccatc 624 ||||||||||||||||||||| Sbjct: 532 atgcagtggtgtccagccatc 512
>gb|AC136743.5| Mus musculus chromosome 9, clone RP23-149D5, complete sequence Length = 213343 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 604 atgcagtggtgtccagccatc 624 ||||||||||||||||||||| Sbjct: 71456 atgcagtggtgtccagccatc 71476
>gb|AY117280.1| Arabidopsis thaliana putative ankyrin repeat protein EMB506 (At5g40160) mRNA, complete cds Length = 979 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 677 tgcagggcaccaacttgaactgcataatg 705 |||| ||| |||||||||||||||||||| Sbjct: 695 tgcaaggctccaacttgaactgcataatg 667
>gb|AY063792.1| Arabidopsis thaliana putative ankyrin repeat protein EMB506 (At5g40160) mRNA, complete cds Length = 1203 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 677 tgcagggcaccaacttgaactgcataatg 705 |||| ||| |||||||||||||||||||| Sbjct: 697 tgcaaggctccaacttgaactgcataatg 669
>dbj|AK137504.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830121D02 product:globin inducing factor, fetal, full insert sequence Length = 2775 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 604 atgcagtggtgtccagccatc 624 ||||||||||||||||||||| Sbjct: 1561 atgcagtggtgtccagccatc 1541
>dbj|AK132850.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930441H24 product:globin inducing factor, fetal, full insert sequence Length = 936 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 604 atgcagtggtgtccagccatc 624 ||||||||||||||||||||| Sbjct: 564 atgcagtggtgtccagccatc 544
>dbj|AK153923.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430005J15 product:globin inducing factor, fetal, full insert sequence Length = 2798 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 604 atgcagtggtgtccagccatc 624 ||||||||||||||||||||| Sbjct: 1562 atgcagtggtgtccagccatc 1542
>dbj|AK155932.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830001E04 product:globin inducing factor, fetal, full insert sequence Length = 3199 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 604 atgcagtggtgtccagccatc 624 ||||||||||||||||||||| Sbjct: 1554 atgcagtggtgtccagccatc 1534
>ref|NM_019683.2| Mus musculus ankyrin repeat domain 49 (Ankrd49), mRNA Length = 1781 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 604 atgcagtggtgtccagccatc 624 ||||||||||||||||||||| Sbjct: 532 atgcagtggtgtccagccatc 512
>dbj|AK157315.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830210O08 product:globin inducing factor, fetal, full insert sequence Length = 2785 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 604 atgcagtggtgtccagccatc 624 ||||||||||||||||||||| Sbjct: 1562 atgcagtggtgtccagccatc 1542
>gb|AF026167.1|AF026167 Arabidopsis thaliana ankyrin repeat protein EMB506 mRNA, complete cds Length = 1217 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 677 tgcagggcaccaacttgaactgcataatg 705 |||| ||| |||||||||||||||||||| Sbjct: 724 tgcaaggctccaacttgaactgcataatg 696
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 441 gaacaagtttgagaagctttgccag 465 ||||||||||||||| ||||||||| Sbjct: 22379366 gaacaagtttgagaaactttgccag 22379390
>gb|AY135692.1| Mus musculus Miwi 2 protein (Miwi2) gene, complete cds Length = 99999 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 604 atgcagtggtgtccagccatc 624 ||||||||||||||||||||| Sbjct: 8887 atgcagtggtgtccagccatc 8867
>dbj|AK197452.1| Mus musculus cDNA, clone:Y1G0125C12, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034406, based on BLAT search Length = 376 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 604 atgcagtggtgtccagccatc 624 ||||||||||||||||||||| Sbjct: 145 atgcagtggtgtccagccatc 125
>dbj|AB010699.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN9 Length = 61001 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 677 tgcagggcaccaacttgaactgcataatg 705 |||| ||| |||||||||||||||||||| Sbjct: 15779 tgcaaggctccaacttgaactgcataatg 15807
>gb|AC007918.2|F28J9 Arabidopsis thaliana chromosome 1 BAC F28J9 sequence, complete sequence Length = 115963 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 439 tggaacaagtttgagaagctt 459 ||||||||||||||||||||| Sbjct: 76851 tggaacaagtttgagaagctt 76831
>gb|AF028722.1|AF028722 Mus musculus fetal globin inducing factor mRNA, complete cds Length = 1801 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 604 atgcagtggtgtccagccatc 624 ||||||||||||||||||||| Sbjct: 570 atgcagtggtgtccagccatc 550
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 441 gaacaagtttgagaagctttgccag 465 ||||||||||||||| ||||||||| Sbjct: 130270 gaacaagtttgagaaactttgccag 130294
>gb|BC020398.1| Mus musculus ankyrin repeat domain 49, mRNA (cDNA clone IMAGE:3154602) Length = 1405 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 604 atgcagtggtgtccagccatc 624 ||||||||||||||||||||| Sbjct: 523 atgcagtggtgtccagccatc 503
>emb|CT030247.6| Mouse DNA sequence from clone RP23-340G24 on chromosome 9, complete sequence Length = 218753 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 604 atgcagtggtgtccagccatc 624 ||||||||||||||||||||| Sbjct: 37076 atgcagtggtgtccagccatc 37056
>gb|AC111115.13| Mus musculus chromosome 5, clone RP23-213H20, complete sequence Length = 201694 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 623 tcaacatcagcaacgttaac 642 |||||||||||||||||||| Sbjct: 119806 tcaacatcagcaacgttaac 119787
>ref|NM_129853.3| Arabidopsis thaliana unknown protein AT2G42920 mRNA, complete cds Length = 1687 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 acacaacatgtcaatgaaaa 186 |||||||||||||||||||| Sbjct: 358 acacaacatgtcaatgaaaa 339
>gb|AC102418.9| Mus musculus chromosome 3, clone RP24-499L10, complete sequence Length = 208274 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 621 catcaacatcagcaacgttaacatcaac 648 |||||||||||||||| | ||||||||| Sbjct: 41051 catcaacatcagcaacatcaacatcaac 41024 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 621 catcaacatcagcaacgttaacatcaac 648 |||||||||||||||| | ||||||||| Sbjct: 41012 catcaacatcagcaacatcaacatcaac 40985
>ref|XM_530924.1| PREDICTED: Pan troglodytes LOC462664 (LOC462664), mRNA Length = 1119 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ttgctgccatttgatctttg 394 |||||||||||||||||||| Sbjct: 1030 ttgctgccatttgatctttg 1049
>gb|AC148089.8| Mus musculus chromosome 8, clone RP24-366L10, complete sequence Length = 178426 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 520 tccaccattggttcttcttgtctg 543 ||||||||||||||||| |||||| Sbjct: 77386 tccaccattggttcttcgtgtctg 77363
>gb|AF321298.1| Walrus calicivirus non-structural polyprotein, capsid, and putative nucleic-acid binding protein genes, complete cds Length = 8289 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 tctgaatgttgccaattcac 63 |||||||||||||||||||| Sbjct: 3747 tctgaatgttgccaattcac 3728
>gb|AC149631.3| Rhinolophus ferrumequinum clone VMRC7-80B12, complete sequence Length = 142320 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 605 tgcagtggtgtccagccatc 624 |||||||||||||||||||| Sbjct: 11702 tgcagtggtgtccagccatc 11721
>emb|CR391941.10| Zebrafish DNA sequence from clone DKEY-25O19 in linkage group 16, complete sequence Length = 187002 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 682 ggcaccaacttgaactgcataatg 705 ||||||||||||||||| |||||| Sbjct: 85063 ggcaccaacttgaactggataatg 85040
>emb|AL356276.9| Human DNA sequence from clone RP11-367J7 on chromosome 1 Contains the gene for Fc receptor-like protein 3 (FCRH3), a novel gene, a pseudogene similar to part of SON DNA binding protein (SON), a voltage-dependent anion channel 1 (VDAC1) pseudogene, the SPAP1 gene for SH2 domain containing phosphatase anchor protein 1 and the 3' end of the gene for Fc receptor-like protein 1 (FCRH1), complete sequence Length = 160356 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 tctctgaatgttgccaattc 61 |||||||||||||||||||| Sbjct: 31500 tctctgaatgttgccaattc 31481
>emb|AL157828.14| Human DNA sequence from clone RP11-214I20 on chromosome 9p22.3-24 Contains the 5' end of a novel gene and the 3' end of a novel gene (FLJ38505 FLJ90271), complete sequence Length = 100927 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ataatcaccttaggacagag 367 |||||||||||||||||||| Sbjct: 6288 ataatcaccttaggacagag 6307
>emb|AL117348.26|HSDJ559A3 Human DNA sequence from clone RP4-559A3 on chromosome 1q41-42.2 Contains the 5' end of a novel gene (KIAA0792), the LEFTB gene for left-right determination, factor B, the PYCR2 gene for pyrroline-5-carboxylate reductase family, member 2, the EBAF gene for endometrial bleeding associated factor (left-right determination, factor A; transforming growth factor beta superfamily), a novel gene, an NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa (NDUFA3) pseudogene and two CpG islands, complete sequence Length = 127736 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 aaaggaataccagcactcca 335 |||||||||||||||||||| Sbjct: 20826 aaaggaataccagcactcca 20845
>emb|AL035690.10|HS202I21 Human DNA sequence from clone RP1-202I21 on chromosome 6p21.1-21.2 Contains a novel gene (FLJ11101, DKFZp434H012), a pseudogene similar to part of breast cancer antigen NY-BR-1, the GLP1R gene for glucagon-like peptide 1 receptor, a 40S ribosomal protein S2 (RPS2) pseudogene, the 3' part of the DNAH8 gene for dynein axonemal heavy polypeptide 8 and CpG islands, complete sequence Length = 142665 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ttgctgccatttgatctttg 394 |||||||||||||||||||| Sbjct: 40216 ttgctgccatttgatctttg 40235
>gb|AC159618.2| Mus musculus BAC clone RP24-472P16 from chromosome 12, complete sequence Length = 170146 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 caacatgtcaatgaaaacaa 189 |||||||||||||||||||| Sbjct: 49050 caacatgtcaatgaaaacaa 49031
>gb|BC022007.2| Homo sapiens chromosome 6 open reading frame 64, mRNA (cDNA clone MGC:26272 IMAGE:4825803), complete cds Length = 1125 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ttgctgccatttgatctttg 394 |||||||||||||||||||| Sbjct: 721 ttgctgccatttgatctttg 740
>gb|AC106726.3| Homo sapiens 3 BAC RP11-450I19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 200359 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 ggaacaagtttgagaagctt 459 |||||||||||||||||||| Sbjct: 4986 ggaacaagtttgagaagctt 5005
>gb|AC158555.6| Mus musculus chromosome 3, clone RP23-14B10, complete sequence Length = 208510 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 621 catcaacatcagcaacgttaacatcaac 648 |||||||||||||||| | ||||||||| Sbjct: 164128 catcaacatcagcaacatcaacatcaac 164101 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 621 catcaacatcagcaacgttaacatcaac 648 |||||||||||||||| | ||||||||| Sbjct: 164089 catcaacatcagcaacatcaacatcaac 164062
>emb|CR627244.1| Homo sapiens mRNA; cDNA DKFZp781B2319 (from clone DKFZp781B2319) Length = 5193 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ttgctgccatttgatctttg 394 |||||||||||||||||||| Sbjct: 5088 ttgctgccatttgatctttg 5107
>dbj|AK125622.1| Homo sapiens cDNA FLJ43634 fis, clone SPLEN2036712 Length = 2558 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 tctctgaatgttgccaattc 61 |||||||||||||||||||| Sbjct: 1606 tctctgaatgttgccaattc 1625
>dbj|AK124992.1| Homo sapiens cDNA FLJ43002 fis, clone BRTHA2013054 Length = 3547 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ttgctgccatttgatctttg 394 |||||||||||||||||||| Sbjct: 3458 ttgctgccatttgatctttg 3477
>emb|CR621024.1| full-length cDNA clone CS0DL004YL07 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1622 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ttgctgccatttgatctttg 394 |||||||||||||||||||| Sbjct: 588 ttgctgccatttgatctttg 607
>emb|CR593115.1| full-length cDNA clone CS0DI059YE11 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1965 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ttgctgccatttgatctttg 394 |||||||||||||||||||| Sbjct: 784 ttgctgccatttgatctttg 803
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 cggcaccattgacaagcaat 565 |||||||||||||||||||| Sbjct: 773523 cggcaccattgacaagcaat 773504
>gb|AC006931.6| Arabidopsis thaliana chromosome 2 clone F7D19 map m551, complete sequence Length = 115310 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 acacaacatgtcaatgaaaa 186 |||||||||||||||||||| Sbjct: 22691 acacaacatgtcaatgaaaa 22710
>gb|AC006580.4| Arabidopsis thaliana chromosome 2 clone F23E6 map m551, complete sequence Length = 34842 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 acacaacatgtcaatgaaaa 186 |||||||||||||||||||| Sbjct: 26091 acacaacatgtcaatgaaaa 26110
>gb|AC023122.9| Homo sapiens BAC clone RP11-297L21 from 3, complete sequence Length = 178642 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ggaacaagtttgagaagctt 459 |||||||||||||||||||| Sbjct: 2654 ggaacaagtttgagaagctt 2635
>emb|BX511107.3| Zebrafish DNA sequence from clone CH211-117I13 in linkage group 23, complete sequence Length = 165497 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 cagatcatatgagttgaagt 482 |||||||||||||||||||| Sbjct: 36457 cagatcatatgagttgaagt 36438
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 605 tgcagtggtgtccagccatc 624 |||||||||||||||||||| Sbjct: 1499049 tgcagtggtgtccagccatc 1499068
>gb|AC012562.5|AC012562 Arabidopsis thaliana chromosome 3 BAC F17O14 genomic sequence, complete sequence Length = 90721 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 aaaccttccaagttccaagt 218 |||||||||||||||||||| Sbjct: 66709 aaaccttccaagttccaagt 66728
>gb|AC127894.6| Homo sapiens 12 BAC RP11-324P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 96967 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 cctctgttggctggaacaag 447 |||||||||||||||||||| Sbjct: 59999 cctctgttggctggaacaag 60018
>gb|AC134523.5| Mus musculus BAC clone RP24-492M8 from 5, complete sequence Length = 178801 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 ttggctggaacaagtttgag 453 |||||||||||||||||||| Sbjct: 24766 ttggctggaacaagtttgag 24785
>emb|CT030246.7| Mouse DNA sequence from clone RP24-400A10 on chromosome 12, complete sequence Length = 158577 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 caacatgtcaatgaaaacaa 189 |||||||||||||||||||| Sbjct: 7073 caacatgtcaatgaaaacaa 7092
>emb|AL136839.1|HSM801807 Homo sapiens mRNA; cDNA DKFZp434H012 (from clone DKFZp434H012); complete cds Length = 1156 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ttgctgccatttgatctttg 394 |||||||||||||||||||| Sbjct: 752 ttgctgccatttgatctttg 771 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,719,481 Number of Sequences: 3902068 Number of extensions: 5719481 Number of successful extensions: 99283 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98943 Number of HSP's gapped (non-prelim): 340 length of query: 711 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 688 effective length of database: 17,143,297,704 effective search space: 11794588820352 effective search space used: 11794588820352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)